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Merge commit 'OpenCFD/master' into olesenm

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Mark Olesen 2008-11-05 10:42:05 +01:00
commit 345df1e970
33 changed files with 4079 additions and 333 deletions
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# Generated by tetgen -qfa0.005 beam.poly

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156 1.7770110643184227 0.51886547556217666 0
157 1.1389013076817112 0.76226887437066193 0
158 1.1602175406966813 1 0.53828850106094039
159 0.90095306490776128 0.48470516503498373 0.2446998657917499
160 0.57742475390278236 0.27551969863450299 0.27345305390889807
161 0.81036655925196366 0.7630643710333207 0.35054165377955776
162 0.52956259724790877 0.46221182650782827 1
163 0.29250079461431827 0.2842960350422109 0.71570127112180726
164 0.27385619515889037 0.6248453002643185 0.71436194557321087
165 0.62168045737651678 0 0.77560610491729931
166 0.62537124999999993 0.2188435803315899 1
167 0.40196038774740384 1 0.20267603513549107
168 0.17704223351222992 0.82288246470050785 0
169 0.18892018646284411 1 0.18899622733072144
170 0.23373058746113159 0.23679172957531613 0.21078402860060638
171 0.24428427259573549 0.59937304517793366 0.24724219230200442
172 0.42388190576270124 1 0.4887158204143946
173 1.0208555875954755 1 0.81817459887813815
174 1.0669175695053206 0.81733378836053194 1
175 0.8464712840664248 0.80134170756139955 1
176 0.60552202714220704 0.62419153018194229 0.54239960836207701
177 1.606777848712118 0.19973253606683206 1
178 1.4250560553222698 0 0.732249791887851
179 1.12551975 0.19352873225326209 1
180 1.1620342234529084 0 0.53548179044497457
181 0.77419059143108437 0.35536625456813642 0.76865650139332142
182 0.95600842566592681 0 0.52050427577014857
183 2 0.75 1
184 1.8229055680968635 1 0.82294606919028224
185 1.8124074661770861 0.8124421408239394 1
186 1.6847465495324894 0.55699324455967203 0.74450659675858755
187 1.1945125727535346 0.47020737648361044 0.48501348343009743
188 1.4371531545555845 0.81243056656291324 1
189 1.0230031981183827 0.60745624022002409 0.70905352953001077
190 1.3178218537541635 0.74283221838842173 0.24644567916733129
191 1.2298563370114035 0.23209604059822986 0.27403980288191482
192 1.7289412043422971 0.73378563235104455 0.27218740896208421
193 1.6944192651948711 0.39497422853539144 0.28096087015676863
194 1.719021973042385 0.27206088666699435 0.73925099693622187
195 0.51628118103442489 0.26487001488387318 0.53136856951372224
196 0.22693818747394334 0.22584860839480125 0.50499300132112901
197 0.18870598201308805 1 0.81131589108741564
198 0.18140974929389231 0.81855222162009078 1
199 0.52377345173705003 0.22575111801259504 0.77599180569982884
200 0.44512574719134834 0.82031319413422632 0
201 0.43769402753141229 0 0.18763960779463965
202 0.23194582827732274 0.56348972010969589 0.48517047319960538
203 1.404605953982319 0.2885118284317002 0.71332319773860509
204 0.83285106746651061 0.22679389369216291 0.56316489552371896
205 1.746191712341544 0.57096666984982924 0.48834249131610469
206 1.2698479063322867 0.73902081556323673 0.53223169180184582
207 1.0027339377070847 0.7783240018776667 0.51915438810718473
208 1.1247094999999998 1 0.19525173141898322
209 1.0585177272595161 0.22306568484158776 0.45497453797743681
210 1.5766743500280587 0.62019545180903912 0
211 1.5362846212581589 0.2135856104587727 0
212 1.7956396187713533 0.19223457391785517 0.37621602432494938
213 0.2338562054207384 0.80644498148268706 0.52587899633894741
# Generated by tetgen -qfa0.005 beam.poly

228
applications/utilities/mesh/generation/blockMesh/blockPoints.C
View File

@ -35,23 +35,23 @@ Description
void Foam::block::blockPoints()
{
// set local variables for mesh specification
label ni = blockDef_.n().x();
label nj = blockDef_.n().y();
label nk = blockDef_.n().z();
const label ni = blockDef_.n().x();
const label nj = blockDef_.n().y();
const label nk = blockDef_.n().z();
point start = blockDef_.points()[blockDef_.blockShape()[0]];
point xEnd = blockDef_.points()[blockDef_.blockShape()[1]];
point xyEnd = blockDef_.points()[blockDef_.blockShape()[2]];
point yEnd = blockDef_.points()[blockDef_.blockShape()[3]];
const point p000 = blockDef_.points()[blockDef_.blockShape()[0]];
const point p100 = blockDef_.points()[blockDef_.blockShape()[1]];
const point p110 = blockDef_.points()[blockDef_.blockShape()[2]];
const point p010 = blockDef_.points()[blockDef_.blockShape()[3]];
point zEnd = blockDef_.points()[blockDef_.blockShape()[4]];
point xzEnd = blockDef_.points()[blockDef_.blockShape()[5]];
point xyzEnd = blockDef_.points()[blockDef_.blockShape()[6]];
point yzEnd = blockDef_.points()[blockDef_.blockShape()[7]];
const point p001 = blockDef_.points()[blockDef_.blockShape()[4]];
const point p101 = blockDef_.points()[blockDef_.blockShape()[5]];
const point p111 = blockDef_.points()[blockDef_.blockShape()[6]];
const point p011 = blockDef_.points()[blockDef_.blockShape()[7]];
// set reference to the list of edge point and weighting factors
const List<List<point> >& edgePoints = blockDef_.blockEdgePoints();
const scalarListList& edgeWeights = blockDef_.blockEdgeWeights();
// list of edge point and weighting factors
const List<List<point> >& p = blockDef_.blockEdgePoints();
const scalarListList& w = blockDef_.blockEdgeWeights();
// generate vertices
@ -63,193 +63,138 @@ void Foam::block::blockPoints()
{
label vertexNo = vtxLabel(i, j, k);
vector edgex1 = start*(1.0 - edgeWeights[0][i])
+ xEnd*edgeWeights[0][i];
// points on edges
vector edgex1 = p000 + (p100 - p000)*w[0][i];
vector edgex2 = p010 + (p110 - p010)*w[1][i];
vector edgex3 = p011 + (p111 - p011)*w[2][i];
vector edgex4 = p001 + (p101 - p001)*w[3][i];
vector edgex2 = yEnd*(1.0 - edgeWeights[1][i])
+ xyEnd*edgeWeights[1][i];
vector edgey1 = p000 + (p010 - p000)*w[4][j];
vector edgey2 = p100 + (p110 - p100)*w[5][j];
vector edgey3 = p101 + (p111 - p101)*w[6][j];
vector edgey4 = p001 + (p011 - p001)*w[7][j];
vector edgex3 = yzEnd*(1.0 - edgeWeights[2][i])
+ xyzEnd*edgeWeights[2][i];
vector edgex4 = zEnd*(1.0 - edgeWeights[3][i])
+ xzEnd*edgeWeights[3][i];
vector edgey1 = start*(1.0 - edgeWeights[4][j])
+ yEnd*edgeWeights[4][j];
vector edgey2 = xEnd*(1.0 - edgeWeights[5][j])
+ xyEnd*edgeWeights[5][j];
vector edgey3 = xzEnd*(1.0 - edgeWeights[6][j])
+ xyzEnd*edgeWeights[6][j];
vector edgey4 = zEnd*(1.0 - edgeWeights[7][j])
+ yzEnd*edgeWeights[7][j];
vector edgez1 = start*(1.0 - edgeWeights[8][k])
+ zEnd*edgeWeights[8][k];
vector edgez2 = xEnd*(1.0 - edgeWeights[9][k])
+ xzEnd*edgeWeights[9][k];
vector edgez3 = xyEnd*(1.0 - edgeWeights[10][k])
+ xyzEnd*edgeWeights[10][k];
vector edgez4 = yEnd*(1.0 - edgeWeights[11][k])
+ yzEnd*edgeWeights[11][k];
vector edgez1 = p000 + (p001 - p000)*w[8][k];
vector edgez2 = p100 + (p101 - p100)*w[9][k];
vector edgez3 = p110 + (p111 - p110)*w[10][k];
vector edgez4 = p010 + (p011 - p010)*w[11][k];
// calculate the importance factors for all edges
// x - direction
scalar impx1 =
(
(1.0 - edgeWeights[0][i])
*(1.0 - edgeWeights[4][j])
*(1.0 - edgeWeights[8][k])
+ edgeWeights[0][i]
*(1.0 - edgeWeights[5][j])
*(1.0 - edgeWeights[9][k])
(1.0 - w[0][i])*(1.0 - w[4][j])*(1.0 - w[8][k])
+ w[0][i]*(1.0 - w[5][j])*(1.0 - w[9][k])
);
scalar impx2 =
(
(1.0 - edgeWeights[1][i])
*edgeWeights[4][j]
*(1.0 - edgeWeights[11][k])
+ edgeWeights[1][i]
*edgeWeights[5][j]
*(1.0 - edgeWeights[10][k])
(1.0 - w[1][i])*w[4][j]*(1.0 - w[11][k])
+ w[1][i]*w[5][j]*(1.0 - w[10][k])
);
scalar impx3 =
(
(1.0 - edgeWeights[2][i])
*edgeWeights[7][j]
*edgeWeights[11][k]
+ edgeWeights[2][i]
*edgeWeights[6][j]
*edgeWeights[10][k]
);
scalar impx3 =
(
(1.0 - w[2][i])*w[7][j]*w[11][k]
+ w[2][i]*w[6][j]*w[10][k]
);
scalar impx4 =
(
(1.0 - edgeWeights[3][i])
*(1.0 - edgeWeights[7][j])
*edgeWeights[8][k]
+ edgeWeights[3][i]
*(1.0 - edgeWeights[6][j])
*edgeWeights[9][k]
);
scalar impx4 =
(
(1.0 - w[3][i])*(1.0 - w[7][j])*w[8][k]
+ w[3][i]*(1.0 - w[6][j])*w[9][k]
);
scalar magImpx = impx1 + impx2 + impx3 + impx4;
impx1 /= magImpx;
impx2 /= magImpx;
impx3 /= magImpx;
impx4 /= magImpx;
// y - direction
scalar impy1 =
(
(1.0 - edgeWeights[4][j])
*(1.0 - edgeWeights[0][i])
*(1.0 - edgeWeights[8][k])
+ edgeWeights[4][j]
*(1.0 - edgeWeights[1][i])
*(1.0 - edgeWeights[11][k])
(1.0 - w[4][j])*(1.0 - w[0][i])*(1.0 - w[8][k])
+ w[4][j]*(1.0 - w[1][i])*(1.0 - w[11][k])
);
scalar impy2 =
(
(1.0 - edgeWeights[5][j])
*edgeWeights[0][i]
*(1.0 - edgeWeights[9][k])
+ edgeWeights[5][j]
*edgeWeights[1][i]
*(1.0 - edgeWeights[10][k])
(1.0 - w[5][j])*w[0][i]*(1.0 - w[9][k])
+ w[5][j]*w[1][i]*(1.0 - w[10][k])
);
scalar impy3 =
(
(1.0 - edgeWeights[6][j])
*edgeWeights[3][i]
*edgeWeights[9][k]
+ edgeWeights[6][j]
*edgeWeights[2][i]
*edgeWeights[10][k]
(1.0 - w[6][j])*w[3][i]*w[9][k]
+ w[6][j]*w[2][i]*w[10][k]
);
scalar impy4 =
(
(1.0 - edgeWeights[7][j])
*(1.0 - edgeWeights[3][i])
*edgeWeights[8][k]
+ edgeWeights[7][j]
*(1.0 - edgeWeights[2][i])
*edgeWeights[11][k]
(1.0 - w[7][j])*(1.0 - w[3][i])*w[8][k]
+ w[7][j]*(1.0 - w[2][i])*w[11][k]
);
scalar magImpy = impy1 + impy2 + impy3 + impy4;
impy1 /= magImpy;
impy2 /= magImpy;
impy3 /= magImpy;
impy4 /= magImpy;
// z - direction
scalar impz1 =
(
(1.0 - edgeWeights[8][k])
*(1.0 - edgeWeights[0][i])
*(1.0 - edgeWeights[4][j])
+ edgeWeights[8][k]
*(1.0 - edgeWeights[3][i])
*(1.0 - edgeWeights[7][j])
(1.0 - w[8][k])*(1.0 - w[0][i])*(1.0 - w[4][j])
+ w[8][k]*(1.0 - w[3][i])*(1.0 - w[7][j])
);
scalar impz2 =
(
(1.0 - edgeWeights[9][k])
*edgeWeights[0][i]
*(1.0 - edgeWeights[5][j])
+ edgeWeights[9][k]
*edgeWeights[3][i]
*(1.0 - edgeWeights[6][j])
(1.0 - w[9][k])*w[0][i]*(1.0 - w[5][j])
+ w[9][k]*w[3][i]*(1.0 - w[6][j])
);
scalar impz3 =
(
(1.0 - edgeWeights[10][k])
*edgeWeights[1][i]
*edgeWeights[5][j]
+ edgeWeights[10][k]
*edgeWeights[2][i]
*edgeWeights[6][j]
(1.0 - w[10][k])*w[1][i]*w[5][j]
+ w[10][k]*w[2][i]*w[6][j]
);
scalar impz4 =
(
(1.0 - edgeWeights[11][k])
*(1.0 - edgeWeights[1][i])
*edgeWeights[4][j]
+ edgeWeights[11][k]
*(1.0 - edgeWeights[2][i])
*edgeWeights[7][j]
(1.0 - w[11][k])*(1.0 - w[1][i])*w[4][j]
+ w[11][k]*(1.0 - w[2][i])*w[7][j]
);
scalar magImpz = impz1 + impz2 + impz3 + impz4;
impz1 /= magImpz;
impz2 /= magImpz;
impz3 /= magImpz;
impz4 /= magImpz;
// calculate the correction vectors
vector corx1 = impx1*(edgePoints[0][i] - edgex1);
vector corx2 = impx2*(edgePoints[1][i] - edgex2);
vector corx3 = impx3*(edgePoints[2][i] - edgex3);
vector corx4 = impx4*(edgePoints[3][i] - edgex4);
vector corx1 = impx1*(p[0][i] - edgex1);
vector corx2 = impx2*(p[1][i] - edgex2);
vector corx3 = impx3*(p[2][i] - edgex3);
vector corx4 = impx4*(p[3][i] - edgex4);
vector cory1 = impy1*(edgePoints[4][j] - edgey1);
vector cory2 = impy2*(edgePoints[5][j] - edgey2);
vector cory3 = impy3*(edgePoints[6][j] - edgey3);
vector cory4 = impy4*(edgePoints[7][j] - edgey4);
vector cory1 = impy1*(p[4][j] - edgey1);
vector cory2 = impy2*(p[5][j] - edgey2);
vector cory3 = impy3*(p[6][j] - edgey3);
vector cory4 = impy4*(p[7][j] - edgey4);
vector corz1 = impz1*(edgePoints[8][k] - edgez1);
vector corz2 = impz2*(edgePoints[9][k] - edgez2);
vector corz3 = impz3*(edgePoints[10][k] - edgez3);
vector corz4 = impz4*(edgePoints[11][k] - edgez4);
vector corz1 = impz1*(p[8][k] - edgez1);
vector corz2 = impz2*(p[9][k] - edgez2);
vector corz3 = impz3*(p[10][k] - edgez3);
vector corz4 = impz4*(p[11][k] - edgez4);
// multiply by the importance factor
// x - direction
edgex1 *= impx1;
edgex2 *= impx2;
@ -279,7 +224,6 @@ void Foam::block::blockPoints()
vertices_[vertexNo] += corx1 + corx2 + corx3 + corx4;
vertices_[vertexNo] += cory1 + cory2 + cory3 + cory4;
vertices_[vertexNo] += corz1 + corz2 + corz3 + corz4;
}
}
}

134
applications/utilities/mesh/manipulation/mergeOrSplitBaffles/mergeOrSplitBaffles.C
View File

@ -154,10 +154,77 @@ void insertDuplicateMerge
}
labelList findBaffles(const polyMesh& mesh, const labelList& boundaryFaces)
{
// Get all duplicate face labels (in boundaryFaces indices!).
labelList duplicates = localPointRegion::findDuplicateFaces
(
mesh,
boundaryFaces
);
// Check that none are on processor patches
const polyBoundaryMesh& patches = mesh.boundaryMesh();
forAll(duplicates, bFaceI)
{
if (duplicates[bFaceI] != -1)
{
label faceI = mesh.nInternalFaces() + bFaceI;
label patchI = patches.whichPatch(faceI);
if (isA<processorPolyPatch>(patches[patchI]))
{
FatalErrorIn("findBaffles(const polyMesh&, const labelList&)")
<< "Duplicate face " << faceI
<< " is on a processorPolyPatch."
<< "This is not allowed." << nl
<< "Face:" << faceI
<< " is on patch:" << patches[patchI].name()
<< abort(FatalError);
}
}
}
// Write to faceSet for ease of postprocessing.
{
faceSet duplicateSet
(
mesh,
"duplicateFaces",
(mesh.nFaces() - mesh.nInternalFaces())/256
);
forAll(duplicates, bFaceI)
{
label otherFaceI = duplicates[bFaceI];
if (otherFaceI != -1 && otherFaceI > bFaceI)
{
duplicateSet.insert(mesh.nInternalFaces() + bFaceI);
duplicateSet.insert(mesh.nInternalFaces() + otherFaceI);
}
}
Pout<< "Writing " << duplicateSet.size()
<< " duplicate faces to faceSet " << duplicateSet.objectPath()
<< nl << endl;
duplicateSet.write();
}
return duplicates;
}
int main(int argc, char *argv[])
{
argList::validOptions.insert("split", "");
argList::validOptions.insert("overwrite", "");
argList::validOptions.insert("detectOnly", "");
# include "setRootCase.H"
# include "createTime.H"
runTime.functionObjects().off();
@ -165,6 +232,7 @@ int main(int argc, char *argv[])
bool split = args.options().found("split");
bool overwrite = args.options().found("overwrite");
bool detectOnly = args.options().found("detectOnly");
// Collect all boundary faces
labelList boundaryFaces(mesh.nFaces() - mesh.nInternalFaces());
@ -175,6 +243,15 @@ int main(int argc, char *argv[])
}
if (detectOnly)
{
findBaffles(mesh, boundaryFaces);
return 0;
}
// Read objects in time directory
IOobjectList objects(mesh, runTime.timeName());
@ -238,62 +315,7 @@ int main(int argc, char *argv[])
<< nl << endl;
// Get all duplicate face labels (in boundaryFaces indices!).
labelList duplicates = localPointRegion::findDuplicateFaces
(
mesh,
boundaryFaces
);
// Check that none are on processor patches
const polyBoundaryMesh& patches = mesh.boundaryMesh();
forAll(duplicates, bFaceI)
{
if (duplicates[bFaceI] != -1)
{
label faceI = mesh.nInternalFaces() + bFaceI;
label patchI = patches.whichPatch(faceI);
if (isA<processorPolyPatch>(patches[patchI]))
{
FatalErrorIn(args.executable())
<< "Duplicate face " << faceI
<< " is on a processorPolyPatch."
<< "This is not allowed." << nl
<< "Face:" << faceI
<< " is on patch:" << patches[patchI].name()
<< abort(FatalError);
}
}
}
// Write to faceSet for ease of postprocessing.
{
faceSet duplicateSet
(
mesh,
"duplicateFaces",
(mesh.nFaces() - mesh.nInternalFaces())/256
);
forAll(duplicates, bFaceI)
{
label otherFaceI = duplicates[bFaceI];
if (otherFaceI != -1 && otherFaceI > bFaceI)
{
duplicateSet.insert(mesh.nInternalFaces() + bFaceI);
duplicateSet.insert(mesh.nInternalFaces() + otherFaceI);
}
}
Pout<< "Writing " << duplicateSet.size()
<< " duplicate faces to faceSet " << duplicateSet.objectPath()
<< nl << endl;
duplicateSet.write();
}
labelList duplicates(findBaffles(mesh, boundaryFaces));
// Merge into internal faces.
insertDuplicateMerge(mesh, duplicates, meshMod);

6
applications/utilities/mesh/manipulation/setSet/setSet.C
View File

@ -714,9 +714,11 @@ commandStatus parseAction(const word& actionName)
int main(int argc, char *argv[])
{
# include "addRegionOption.H"
# include "addTimeOptions.H"
argList::validOptions.insert("noVTK", "");
argList::validOptions.insert("batch", "file");
# include "addTimeOptions.H"
# include "setRootCase.H"
# include "createTime.H"
@ -730,7 +732,7 @@ int main(int argc, char *argv[])
runTime.setTime(Times[startTime], startTime);
# include "createPolyMesh.H"
# include "createNamedPolyMesh.H"
// Print some mesh info
printMesh(runTime, mesh);

4
applications/utilities/postProcessing/patch/patchAverage/patchAverage.C
View File

@ -79,12 +79,12 @@ int main(int argc, char *argv[])
Info<< " Reading volScalarField " << fieldName << endl;
volScalarField field(fieldHeader, mesh);
scalar area = sum(mesh.magSf().boundaryField()[patchi]);
scalar area = gSum(mesh.magSf().boundaryField()[patchi]);
scalar sumField = 0;
if (area > 0)
{
sumField = sum
sumField = gSum
(
mesh.magSf().boundaryField()[patchi]
* field.boundaryField()[patchi]

6
applications/utilities/postProcessing/patch/patchIntegrate/patchIntegrate.C
View File

@ -75,14 +75,14 @@ int main(int argc, char *argv[])
}
// Give patch area
Info<< " Patch area = " << sum(mesh.Sf().boundaryField()[patchi]) << endl;
Info<< " Patch area = " << gSum(mesh.Sf().boundaryField()[patchi]) << endl;
if (fieldHeader.headerClassName() == "volScalarField")
{
Info<< " Reading volScalarField " << fieldName << endl;
volScalarField field(fieldHeader, mesh);
vector sumField = sum
vector sumField = gSum
(
mesh.Sf().boundaryField()[patchi]
* field.boundaryField()[patchi]
@ -97,7 +97,7 @@ int main(int argc, char *argv[])
Info<< " Reading surfaceScalarField " << fieldName << endl;
surfaceScalarField field(fieldHeader, mesh);
scalar sumField = sum(field.boundaryField()[patchi]);
scalar sumField = gSum(field.boundaryField()[patchi]);
Info<< " Integral of " << fieldName << " over patch "
<< patchName << '[' << patchi << ']' << " = "

34
applications/utilities/surface/surfaceCheck/surfaceCheck.C
View File

@ -36,7 +36,7 @@ License
using namespace Foam;
// Does face use valid vertices?
bool validTri(const triSurface& surf, const label faceI)
bool validTri(const bool verbose, const triSurface& surf, const label faceI)
{
// Simple check on indices ok.
@ -49,20 +49,21 @@ bool validTri(const triSurface& surf, const label faceI)
|| (f[2] < 0) || (f[2] >= surf.points().size())
)
{
//WarningIn("validTri(const triSurface&, const label)")
// << "triangle " << faceI << " vertices " << f
// << " uses point indices outside point range 0.."
// << surf.points().size()-1 << endl;
WarningIn("validTri(const triSurface&, const label)")
<< "triangle " << faceI << " vertices " << f
<< " uses point indices outside point range 0.."
<< surf.points().size()-1 << endl;
return false;
}
if ((f[0] == f[1]) || (f[0] == f[2]) || (f[1] == f[2]))
{
//WarningIn("validTri(const triSurface&, const label)")
// << "triangle " << faceI
// << " uses non-unique vertices " << f
// << endl;
WarningIn("validTri(const triSurface&, const label)")
<< "triangle " << faceI
<< " uses non-unique vertices " << f
<< " coords:" << f.points(surf.points())
<< endl;
return false;
}
@ -91,11 +92,12 @@ bool validTri(const triSurface& surf, const label faceI)
&& ((f[2] == nbrF[0]) || (f[2] == nbrF[1]) || (f[2] == nbrF[2]))
)
{
//WarningIn("validTri(const triSurface&, const label)")
// << "triangle " << faceI << " vertices " << f
// << " has the same vertices as triangle " << nbrFaceI
// << " vertices " << nbrF
// << endl;
WarningIn("validTri(const triSurface&, const label)")
<< "triangle " << faceI << " vertices " << f
<< " has the same vertices as triangle " << nbrFaceI
<< " vertices " << nbrF
<< " coords:" << f.points(surf.points())
<< endl;
return false;
}
@ -170,9 +172,11 @@ int main(int argc, char *argv[])
argList::validArgs.clear();
argList::validArgs.append("surface file");
argList::validOptions.insert("noSelfIntersection", "");
argList::validOptions.insert("verbose", "");
argList args(argc, argv);
bool checkSelfIntersection = !args.options().found("noSelfIntersection");
bool verbose = args.options().found("verbose");
fileName surfFileName(args.additionalArgs()[0]);
Pout<< "Reading surface from " << surfFileName << " ..." << nl << endl;
@ -232,7 +236,7 @@ int main(int argc, char *argv[])
forAll(surf, faceI)
{
if (!validTri(surf, faceI))
if (!validTri(verbose, surf, faceI))
{
illegalFaces.append(faceI);
}

3
applications/utilities/surface/surfaceSubset/surfaceSubsetDict
View File

@ -42,4 +42,7 @@ surface
// Extend selection with edge neighbours
addFaceNeighbours no;
// Invert selection
invertSelection false;
// ************************************************************************* //

2
etc/apps/cint/bashrc
View File

@ -31,7 +31,7 @@
#
#------------------------------------------------------------------------------
export CINTSYSDIR=~/pub/CINT/cint
export CINTSYSDIR=~/pub/CINT/cint7
export PATH=$PATH:$CINTSYSDIR
export MANPATH=$MANPATH:$CINTSYSDIR/doc
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:$CINTSYSDIR

2
src/OpenFOAM/containers/Lists/SortableList/SortableList.C
View File

@ -32,7 +32,7 @@ License
// Construct from List
template <class Type>
Foam::SortableList<Type>::SortableList(const List<Type>& values)
Foam::SortableList<Type>::SortableList(const UList<Type>& values)
:
List<Type>(values),
indices_(values.size())

2
src/OpenFOAM/containers/Lists/SortableList/SortableList.H
View File

@ -88,7 +88,7 @@ public:
//- Construct from List, sorting the elements.
// Starts with indices set to index in argument
explicit SortableList(const List<Type>&);
explicit SortableList(const UList<Type>&);
//- Construct from tranferred List, sorting the elements.
// Starts with indices set to index in argument

14
src/OpenFOAM/fields/Fields/Field/Field.C
View File

@ -575,20 +575,6 @@ void Field<Type>::replace
}
template<class Type>
void Field<Type>::transfer(Field<Type>& f)
{
List<Type>::transfer(f);
}
template<class Type>
void Field<Type>::transfer(List<Type>& lst)
{
List<Type>::transfer(lst);
}
template<class Type>
tmp<Field<Type> > Field<Type>::T() const
{

6
src/OpenFOAM/fields/Fields/Field/Field.H
View File

@ -297,12 +297,6 @@ public:
//- Replace a component field of the field
void replace(const direction, const cmptType&);
//- Transfer the contents of the argument Field into this Field
void transfer(Field<Type>&);
//- Transfer the contents of the argument List into this Field
void transfer(List<Type>&);
//- Return the field transpose (only defined for second rank tensors)
tmp<Field<Type> > T() const;

5
src/OpenFOAM/meshes/primitiveMesh/primitiveMeshPointFaces.C
View File

@ -38,6 +38,11 @@ const labelListList& primitiveMesh::pointFaces() const
{
if (!pfPtr_)
{
if (debug)
{
Pout<< "primitiveMesh::pointFaces() : "
<< "calculating pointFaces" << endl;
}
// Invert faces()
pfPtr_ = new labelListList(nPoints());
invertManyToMany(nPoints(), faces(), *pfPtr_);

82
src/autoMesh/autoHexMesh/autoHexMeshDriver/autoSnapDriver.C
View File

@ -218,7 +218,8 @@ Foam::label Foam::autoSnapDriver::getCollocatedPoints
// Calculate displacement as average of patch points.
Foam::pointField Foam::autoSnapDriver::smoothPatchDisplacement
(
const motionSmoother& meshMover
const motionSmoother& meshMover,
const List<labelPair>& baffles
) const
{
const indirectPrimitivePatch& pp = meshMover.patch();
@ -253,6 +254,34 @@ Foam::pointField Foam::autoSnapDriver::smoothPatchDisplacement
const pointField& points = pp.points();
const polyMesh& mesh = meshMover.mesh();
// Get labels of faces to count (master of coupled faces and baffle pairs)
PackedList<1> isMasterFace(syncTools::getMasterFaces(mesh));
{
forAll(baffles, i)
{
label f0 = baffles[i].first();
label f1 = baffles[i].second();
if (isMasterFace.get(f0) == 1)
{
// Make f1 a slave
isMasterFace.set(f1, 0);
}
else if (isMasterFace.get(f1) == 1)
{
isMasterFace.set(f0, 0);
}
else
{
FatalErrorIn("autoSnapDriver::smoothPatchDisplacement(..)")
<< "Both sides of baffle consisting of faces " << f0
<< " and " << f1 << " are already slave faces."
<< abort(FatalError);
}
}
}
// Get average position of boundary face centres
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@ -266,9 +295,14 @@ Foam::pointField Foam::autoSnapDriver::smoothPatchDisplacement
forAll(pFaces, pfI)
{
avgBoundary[patchPointI] += pp[pFaces[pfI]].centre(points);
label faceI = pFaces[pfI];
if (isMasterFace.get(pp.addressing()[faceI]) == 1)
{
avgBoundary[patchPointI] += pp[faceI].centre(points);
nBoundary[patchPointI]++;
}
}
nBoundary[patchPointI] = pFaces.size();
}
syncTools::syncPointList
@ -886,7 +920,7 @@ void Foam::autoSnapDriver::preSmoothPatch
checkFaces[faceI] = faceI;
}
pointField patchDisp(smoothPatchDisplacement(meshMover));
pointField patchDisp(smoothPatchDisplacement(meshMover, baffles));
// The current mesh is the starting mesh to smooth from.
meshMover.setDisplacement(patchDisp);
@ -1008,9 +1042,11 @@ Foam::vectorField Foam::autoSnapDriver::calcNearestSurface
// Displacement per patch point
vectorField patchDisp(localPoints.size(), vector::zero);
if (returnReduce(localPoints.size(), sumOp<label>()) > 0)
{
// Current surface snapped to
labelList snapSurf(localPoints.size(), -1);
// Divide surfaces into zoned and unzoned
labelList zonedSurfaces;
labelList unzonedSurfaces;
@ -1039,16 +1075,9 @@ Foam::vectorField Foam::autoSnapDriver::calcNearestSurface
patchDisp[pointI] =
hitInfo[pointI].hitPoint()
- localPoints[pointI];
snapSurf[pointI] = hitSurface[pointI];
}
//else
//{
// WarningIn("autoSnapDriver::calcNearestSurface(..)")
// << "For point:" << pointI
// << " coordinate:" << localPoints[pointI]
// << " did not find any surface within:"
// << 4*snapDist[pointI]
// << " meter." << endl;
//}
}
}
@ -1060,6 +1089,7 @@ Foam::vectorField Foam::autoSnapDriver::calcNearestSurface
// Surfaces with zone information
const wordList& faceZoneNames = surfaces.faceZoneNames();
// Current best snap distance
scalarField minSnapDist(snapDist);
forAll(zonedSurfaces, i)
@ -1105,19 +1135,25 @@ Foam::vectorField Foam::autoSnapDriver::calcNearestSurface
minSnapDist[pointI],
mag(patchDisp[pointI])
);
}
else
{
WarningIn("autoSnapDriver::calcNearestSurface(..)")
<< "For point:" << pointI
<< " coordinate:" << localPoints[pointI]
<< " did not find any surface within:"
<< 4*minSnapDist[pointI]
<< " meter." << endl;
snapSurf[pointI] = zoneSurfI;
}
}
}
// Check if all points are being snapped
forAll(snapSurf, pointI)
{
if (snapSurf[pointI] == -1)
{
WarningIn("autoSnapDriver::calcNearestSurface(..)")
<< "For point:" << pointI
<< " coordinate:" << localPoints[pointI]
<< " did not find any surface within:"
<< minSnapDist[pointI]
<< " meter." << endl;
}
}
{
scalarField magDisp(mag(patchDisp));

6
src/autoMesh/autoHexMesh/autoHexMeshDriver/autoSnapDriver.H
View File

@ -100,7 +100,11 @@ class autoSnapDriver
//- Calculate displacement per patch point to smooth out patch.
// Quite complicated in determining which points to move where.
pointField smoothPatchDisplacement(const motionSmoother&) const;
pointField smoothPatchDisplacement
(
const motionSmoother&,
const List<labelPair>&
) const;
//- Check that face zones are synced
void checkCoupledFaceZones() const;

4
src/autoMesh/autoHexMesh/meshRefinement/meshRefinement.H
View File

@ -382,10 +382,12 @@ private:
//- Finds zone per cell for cells inside closed named surfaces.
// (uses geometric test for insideness)
// Adapts namedSurfaceIndex so all faces on boundary of cellZone
// have corresponding faceZone.
void findCellZoneGeometric
(
const labelList& closedNamedSurfaces,
const labelList& namedSurfaceIndex,
labelList& namedSurfaceIndex,
const labelList& surfaceToCellZone,
labelList& cellToZone
) const;

196
src/autoMesh/autoHexMesh/meshRefinement/meshRefinementBaffles.C
View File

@ -47,6 +47,7 @@ License
#include "motionSmoother.H"
#include "polyMeshGeometry.H"
#include "IOmanip.H"
#include "cellSet.H"
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
@ -1490,7 +1491,7 @@ Foam::autoPtr<Foam::mapPolyMesh> Foam::meshRefinement::mergeBaffles
void Foam::meshRefinement::findCellZoneGeometric
(
const labelList& closedNamedSurfaces, // indices of closed surfaces
const labelList& namedSurfaceIndex, // per face index of named surface
labelList& namedSurfaceIndex, // per face index of named surface
const labelList& surfaceToCellZone, // cell zone index per surface
labelList& cellToZone
@ -1627,6 +1628,76 @@ void Foam::meshRefinement::findCellZoneGeometric
}
}
}
// Adapt the namedSurfaceIndex
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~
// for if any cells were not completely covered.
for (label faceI = 0; faceI < mesh_.nInternalFaces(); faceI++)
{
label ownZone = cellToZone[mesh_.faceOwner()[faceI]];
label neiZone = cellToZone[mesh_.faceNeighbour()[faceI]];
if (namedSurfaceIndex[faceI] == -1 && (ownZone != neiZone))
{
// Give face the zone of the owner
namedSurfaceIndex[faceI] = findIndex
(
surfaceToCellZone,
max(ownZone, neiZone)
);
}
}
labelList neiCellZone(mesh_.nFaces()-mesh_.nInternalFaces());
for
(
label faceI = mesh_.nInternalFaces();
faceI < mesh_.nFaces();
faceI++
)
{
label own = mesh_.faceOwner()[faceI];
neiCellZone[faceI-mesh_.nInternalFaces()] = cellToZone[own];
}
syncTools::swapBoundaryFaceList(mesh_, neiCellZone, false);
const polyBoundaryMesh& patches = mesh_.boundaryMesh();
forAll(patches, patchI)
{
const polyPatch& pp = patches[patchI];
if (pp.coupled())
{
forAll(pp, i)
{
label faceI = pp.start()+i;
label ownZone = cellToZone[mesh_.faceOwner()[faceI]];
label neiZone = neiCellZone[faceI-mesh_.nInternalFaces()];
if (namedSurfaceIndex[faceI] == -1 && (ownZone != neiZone))
{
// Give face the zone of the owner
namedSurfaceIndex[faceI] = findIndex
(
surfaceToCellZone,
max(ownZone, neiZone)
);
}
}
}
}
// Sync
syncTools::syncFaceList
(
mesh_,
namedSurfaceIndex,
maxEqOp<label>(),
false
);
}
@ -1656,7 +1727,7 @@ void Foam::meshRefinement::findCellZoneTopo
blockedFace[faceI] = true;
}
}
syncTools::syncFaceList(mesh_, blockedFace, orEqOp<bool>(), false);
// No need to sync since namedSurfaceIndex already is synced
// Set region per cell based on walking
regionSplit cellRegion(mesh_, blockedFace);
@ -2149,8 +2220,8 @@ Foam::autoPtr<Foam::mapPolyMesh> Foam::meshRefinement::splitMesh
{
FatalErrorIn
(
"meshRefinement::findCellZoneTopo"
"(const point&, const labelList&, const labelList&, labelList&)"
"meshRefinement::splitMesh"
"(const label, const labelList&, const point&)"
) << "Point " << keepPoint
<< " is not inside the mesh." << nl
<< "Bounding box of the mesh:" << mesh_.globalData().bb()
@ -2703,6 +2774,79 @@ Foam::autoPtr<Foam::mapPolyMesh> Foam::meshRefinement::zonify
}
// Put the cells into the correct zone
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// Closed surfaces with cellZone specified.
labelList closedNamedSurfaces(surfaces_.getClosedNamedSurfaces());
// Zone per cell:
// -2 : unset
// -1 : not in any zone
// >=0: zoneID
labelList cellToZone(mesh_.nCells(), -2);
// Set using geometric test
// ~~~~~~~~~~~~~~~~~~~~~~~~
if (closedNamedSurfaces.size() > 0)
{
findCellZoneGeometric
(
closedNamedSurfaces, // indices of closed surfaces
namedSurfaceIndex, // per face index of named surface
surfaceToCellZone, // cell zone index per surface
cellToZone
);
}
//{
// Pout<< "** finding out blocked faces." << endl;
//
// cellSet zonedCellsGeom(mesh_, "zonedCellsGeom", 100);
// forAll(cellToZone, cellI)
// {
// if (cellToZone[cellI] >= 0)
// {
// zonedCellsGeom.insert(cellI);
// }
// }
// Pout<< "Writing zoned cells to " << zonedCellsGeom.objectPath()
// << endl;
// zonedCellsGeom.write();
//
//
// faceSet zonedFaces(mesh_, "zonedFaces", 100);
// forAll(namedSurfaceIndex, faceI)
// {
// label surfI = namedSurfaceIndex[faceI];
//
// if (surfI != -1)
// {
// zonedFaces.insert(faceI);
// }
// }
// Pout<< "Writing zoned faces to " << zonedFaces.objectPath() << endl;
// zonedFaces.write();
//}
// Set using walking
// ~~~~~~~~~~~~~~~~~
//if (returnReduce(nSet, sumOp<label>()) < mesh_.globalData().nTotalCells())
{
// Topological walk
findCellZoneTopo
(
keepPoint,
namedSurfaceIndex,
surfaceToCellZone,
cellToZone
);
}
// Topochange container
polyTopoChange meshMod(mesh_);
@ -2770,50 +2914,6 @@ Foam::autoPtr<Foam::mapPolyMesh> Foam::meshRefinement::zonify
// Put the cells into the correct zone
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// Closed surfaces with cellZone specified.
labelList closedNamedSurfaces(surfaces_.getClosedNamedSurfaces());
// Zone per cell:
// -2 : unset
// -1 : not in any zone
// >=0: zoneID
labelList cellToZone(mesh_.nCells(), -2);
// Set using geometric test
// ~~~~~~~~~~~~~~~~~~~~~~~~
if (closedNamedSurfaces.size() > 0)
{
findCellZoneGeometric
(
closedNamedSurfaces, // indices of closed surfaces
namedSurfaceIndex, // per face index of named surface
surfaceToCellZone, // cell zone index per surface
cellToZone
);
}
// Set using walking
// ~~~~~~~~~~~~~~~~~
//if (returnReduce(nSet, sumOp<label>()) < mesh_.globalData().nTotalCells())
{
// Topological walk
findCellZoneTopo
(
keepPoint,
namedSurfaceIndex,
surfaceToCellZone,
cellToZone
);
}
// Actually move the cells to their zone
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
forAll(cellToZone, cellI)
{
label zoneI = cellToZone[cellI];

59
src/finiteVolume/cfdTools/general/findRefCell/findRefCell.C
View File

@ -33,15 +33,68 @@ void Foam::setRefCell
const volScalarField& field,
const dictionary& dict,
label& refCelli,
scalar& refValue
scalar& refValue,
bool forceReference
)
{
if (field.needReference())
if (field.needReference() || forceReference)
{
word refCellName = field.name() + "RefCell";
word refPointName = field.name() + "RefPoint";
word refValueName = field.name() + "RefValue";
refCelli = readLabel(dict.lookup(refCellName));
if (dict.found(refCellName))
{
if (Pstream::master())
{
refCelli = readLabel(dict.lookup(refCellName));
}
else
{
refCelli = -1;
}
}
else if (dict.found(refPointName))
{
point refPointi(dict.lookup(refPointName));
refCelli = field.mesh().findCell(refPointi);
label hasRef = (refCelli >= 0 ? 1 : 0);
label sumHasRef = returnReduce<label>(hasRef, sumOp<label>());
if (sumHasRef != 1)
{
FatalErrorIn
(
"void Foam::setRefCell"
"("
" const volScalarField&,"
" const dictionary&,"
" label& scalar&,"
" bool"
")"
)
<< "Unable to set reference cell for field " << field.name()
<< nl << " Reference point " << refPointName
<< " found on multiple domains" << nl << abort(FatalError);
}
}
else
{
FatalErrorIn
(
"void Foam::setRefCell"
"("
" const volScalarField&,"
" const dictionary&,"
" label& scalar&,"
" bool"
")"
)
<< "Unable to set reference cell for field" << field.name() << nl
<< " Please supply either " << refCellName
<< " or " << refPointName << nl << abort(FatalError);
}
refValue = readScalar(dict.lookup(refValueName));
}
}

3
src/finiteVolume/cfdTools/general/findRefCell/findRefCell.H
View File

@ -52,7 +52,8 @@ void setRefCell
const volScalarField& field,
const dictionary& dict,
label& refCelli,
scalar& refValue
scalar& refValue,
bool forceReference = false
);
}

10
src/finiteVolume/fields/fvPatchFields/derived/directMappedFixedValue/directMappedFixedValueFvPatchField.C
View File

@ -234,6 +234,16 @@ void directMappedFixedValueFvPatchField<Type>::updateCoeffs()
(
mpp.samplePatch()
);
if (patchID < 0)
{
FatalErrorIn
(
"void directMappedFixedValueFvPatchField<Type>::"
"updateCoeffs()"
)<< "Unable to find sample patch " << mpp.samplePatch()
<< " for patch " << this->patch().name() << nl
<< abort(FatalError);
}
typedef GeometricField<Type, fvPatchField, volMesh> fieldType;
const word& fieldName = this->dimensionedInternalField().name();
const fieldType& sendField =

2
src/finiteVolume/fvMatrices/fvMatrix/fvMatrix.C
View File

@ -483,7 +483,7 @@ void Foam::fvMatrix<Type>::setReference
{
if (psi_.needReference() || forceReference)
{
if (Pstream::master())
if (cell >= 0)
{
source()[cell] += diag()[cell]*value;
diag()[cell] += diag()[cell];

1
src/meshTools/Make/files
View File

@ -107,6 +107,7 @@ $(pointSources)/faceToPoint/faceToPoint.C
$(pointSources)/boxToPoint/boxToPoint.C
$(pointSources)/surfaceToPoint/surfaceToPoint.C
$(pointSources)/zoneToPoint/zoneToPoint.C
$(pointSources)/nearestToPoint/nearestToPoint.C
surfaceSets/surfaceSets.C

51
src/meshTools/searchableSurface/searchableSurfaceWithGaps.C
View File

@ -26,7 +26,6 @@ License
#include "searchableSurfaceWithGaps.H"
#include "addToRunTimeSelectionTable.H"
#include "SortableList.H"
#include "Time.H"
#include "ListOps.H"
@ -82,7 +81,7 @@ Foam::Pair<Foam::vector> Foam::searchableSurfaceWithGaps::offsetVecs
// Do second offset vector perp to original edge and first offset vector
offsets[1] = n ^ offsets[0];
offsets[1] *= gap_/mag(offsets[1]);
offsets[1] *= gap_;
}
return offsets;
@ -207,6 +206,10 @@ void Foam::searchableSurfaceWithGaps::findLine
List<pointIndexHit>& info
) const
{
// Test with unperturbed vectors
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
surface().findLine(start, end, info);
// Count number of misses. Determine map
@ -215,6 +218,10 @@ void Foam::searchableSurfaceWithGaps::findLine
if (returnReduce(nMiss, sumOp<label>()) > 0)
{
//Pout<< "** retesting with offset0 " << nMiss << " misses out of "
// << start.size() << endl;
// extract segments according to map
pointField compactStart(start, compactMap);
pointField compactEnd(end, compactMap);
@ -228,20 +235,36 @@ void Foam::searchableSurfaceWithGaps::findLine
offset1
);
// Test with offset0 perturbed vectors
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// test in pairs: only if both perturbations hit something
// do we accept the hit.
const vectorField smallVec(SMALL*(compactEnd-compactStart));
List<pointIndexHit> plusInfo;
surface().findLine(compactStart+offset0, compactEnd+offset0, plusInfo);
surface().findLine
(
compactStart+offset0-smallVec,
compactEnd+offset0+smallVec,
plusInfo
);
List<pointIndexHit> minInfo;
surface().findLine(compactStart-offset0, compactEnd-offset0, minInfo);
surface().findLine
(
compactStart-offset0-smallVec,
compactEnd-offset0+smallVec,
minInfo
);
// Extract any hits
forAll(plusInfo, i)
{
if (plusInfo[i].hit() && minInfo[i].hit())
{
info[compactMap[i]] = plusInfo[i].hitPoint()-offset0[i];
info[compactMap[i]] = plusInfo[i];
info[compactMap[i]].rawPoint() -= offset0[i];
}
}
@ -250,6 +273,12 @@ void Foam::searchableSurfaceWithGaps::findLine
if (returnReduce(nMiss, sumOp<label>()) > 0)
{
//Pout<< "** retesting with offset1 " << nMiss << " misses out of "
// << start.size() << endl;
// Test with offset1 perturbed vectors
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// Extract (inplace possible because of order)
forAll(plusMissMap, i)
{
@ -266,17 +295,18 @@ void Foam::searchableSurfaceWithGaps::findLine
offset0.setSize(plusMissMap.size());
offset1.setSize(plusMissMap.size());
const vectorField smallVec(SMALL*(compactEnd-compactStart));
surface().findLine
(
compactStart+offset1,
compactEnd+offset1,
compactStart+offset1-smallVec,
compactEnd+offset1+smallVec,
plusInfo
);
surface().findLine
(
compactStart-offset1,
compactEnd-offset1,
compactStart-offset1-smallVec,
compactEnd-offset1+smallVec,
minInfo
);
@ -285,7 +315,8 @@ void Foam::searchableSurfaceWithGaps::findLine
{
if (plusInfo[i].hit() && minInfo[i].hit())
{
info[compactMap[i]] = plusInfo[i].hitPoint()-offset1[i];
info[compactMap[i]] = plusInfo[i];
info[compactMap[i]].rawPoint() -= offset1[i];
}
}
}

8
src/meshTools/searchableSurface/searchableSurfaceWithGaps.H
View File

@ -27,7 +27,13 @@ Class
Description
searchableSurface using multiple slightly shifted underlying surfaces
to make sure pierces don't go through gaps.
to make sure pierces don't go through gaps:
- shift test vector with two small vectors (of size gap_) perpendicular
to the original.
Test with + and - this vector. Only if both register a hit is it seen
as one.
- extend the test vector slightly (with SMALL) to account for numerical
inaccuracies.
SourceFiles
searchableSurfaceWithGaps.C

154
src/meshTools/sets/pointSources/nearestToPoint/nearestToPoint.C Normal file
View File

@ -0,0 +1,154 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2008 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
\*---------------------------------------------------------------------------*/
#include "nearestToPoint.H"
#include "polyMesh.H"
#include "meshSearch.H"
#include "addToRunTimeSelectionTable.H"
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
namespace Foam
{
defineTypeNameAndDebug(nearestToPoint, 0);
addToRunTimeSelectionTable(topoSetSource, nearestToPoint, word);
addToRunTimeSelectionTable(topoSetSource, nearestToPoint, istream);
}
Foam::topoSetSource::addToUsageTable Foam::nearestToPoint::usage_
(
nearestToPoint::typeName,
"\n Usage: nearestToPoint (pt0 .. ptn)\n\n"
" Select the nearest point for each of the points pt0 ..ptn\n\n"
);
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
void Foam::nearestToPoint::combine(topoSet& set, const bool add) const
{
// Do linear search since usually just a few points.
forAll(points_, pointI)
{
const pointField& pts = mesh_.points();
if (pts.size() > 0)
{
label minPointI = 0;
scalar minDistSqr = magSqr(pts[minPointI] - points_[pointI]);
for (label i = 1; i < pts.size(); i++)
{
scalar distSqr = magSqr(pts[i] - points_[pointI]);
if (distSqr < minDistSqr)
{
minDistSqr = distSqr;
minPointI = i;
}
}
addOrDelete(set, minPointI, add);
}
}
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
// Construct from components
Foam::nearestToPoint::nearestToPoint
(
const polyMesh& mesh,
const pointField& points
)
:
topoSetSource(mesh),
points_(points)
{}
// Construct from dictionary
Foam::nearestToPoint::nearestToPoint
(
const polyMesh& mesh,
const dictionary& dict
)
:
topoSetSource(mesh),
points_(dict.lookup("points"))
{}
// Construct from Istream
Foam::nearestToPoint::nearestToPoint
(
const polyMesh& mesh,
Istream& is
)
:
topoSetSource(mesh),
points_(checkIs(is))
{}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::nearestToPoint::~nearestToPoint()
{}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
void Foam::nearestToPoint::applyToSet
(
const topoSetSource::setAction action,
topoSet& set
) const
{
if ((action == topoSetSource::NEW) || (action == topoSetSource::ADD))
{
Info<< " Adding points nearest to " << points_ << endl;
combine(set, true);
}
else if (action == topoSetSource::DELETE)
{
Info<< " Removing points nearest to " << points_ << endl;
combine(set, false);
}
}
// ************************************************************************* //

122
src/meshTools/sets/pointSources/nearestToPoint/nearestToPoint.H Normal file
View File

@ -0,0 +1,122 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2008 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
Class
Foam::nearestToPoint
Description
A topoSetSource to select points nearest to points.
SourceFiles
nearestToPoint.C
\*---------------------------------------------------------------------------*/
#ifndef nearestToPoint_H
#define nearestToPoint_H
#include "topoSetSource.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
/*---------------------------------------------------------------------------*\
Class nearestToPoint Declaration
\*---------------------------------------------------------------------------*/
class nearestToPoint
:
public topoSetSource
{
// Private data
//- Add usage string
static addToUsageTable usage_;
//- points to select nearest to
pointField points_;
// Private Member Functions
void combine(topoSet& set, const bool add) const;
public:
//- Runtime type information
TypeName("nearestToPoint");
// Constructors
//- Construct from components
nearestToPoint
(
const polyMesh& mesh,
const pointField& points
);
//- Construct from dictionary
nearestToPoint
(
const polyMesh& mesh,
const dictionary& dict
);
//- Construct from Istream
nearestToPoint
(
const polyMesh& mesh,
Istream&
);
// Destructor
virtual ~nearestToPoint();
// Member Functions
virtual void applyToSet
(
const topoSetSource::setAction action,
topoSet&
) const;
};
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace Foam
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //

2
src/thermophysicalModels/specie/thermo/janaf/janafThermoI.H
View File

@ -164,7 +164,7 @@ inline Foam::scalar Foam::janafThermo<equationOfState>::hc() const
(
(((a[4]/5.0*Tstd + a[3]/4.0)*Tstd + a[2]/3.0)*Tstd + a[1]/2.0)*Tstd
+ a[0]
)*Tstd
)*Tstd + a[5]
);
}

1
src/turbulenceModels/LES/incompressible/Make/files
View File

@ -27,6 +27,7 @@ dynMixedSmagorinsky/dynMixedSmagorinsky.C
/*Smagorinsky2/Smagorinsky2.C*/
kOmegaSSTSAS/kOmegaSSTSAS.C
/* Wall functions */
wallFunctions=derivedFvPatchFields/wallFunctions

447
src/turbulenceModels/LES/incompressible/kOmegaSSTSAS/kOmegaSSTSAS.C Normal file
View File

@ -0,0 +1,447 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
\*---------------------------------------------------------------------------*/
#include "kOmegaSSTSAS.H"
#include "addToRunTimeSelectionTable.H"
#include "wallDist.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
namespace incompressible
{
namespace LESModels
{
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
defineTypeNameAndDebug(kOmegaSSTSAS, 0);
addToRunTimeSelectionTable(LESModel, kOmegaSSTSAS, dictionary);
// * * * * * * * * * * * * Protected Member Functions * * * * * * * * * * * //
tmp<volScalarField> kOmegaSSTSAS::F1(const volScalarField& CDkOmega) const
{
volScalarField CDkOmegaPlus = max
(
CDkOmega,
dimensionedScalar("1.0e-10", dimless/sqr(dimTime), 1.0e-10)
);
volScalarField arg1 = min
(
min
(
max
(
(scalar(1)/betaStar_)*sqrt(k_)/(omega_*y_),
scalar(500)*nu()/(sqr(y_)*omega_)
),
(4*alphaOmega2_)*k_/(CDkOmegaPlus*sqr(y_))
),
scalar(10)
);
return tanh(pow4(arg1));
}
tmp<volScalarField> kOmegaSSTSAS::F2() const
{
volScalarField arg2 = min
(
max
(
(scalar(2)/betaStar_)*sqrt(k_)/(omega_*y_),
scalar(500)*nu()/(sqr(y_)*omega_)
),
scalar(100)
);
return tanh(sqr(arg2));
}
tmp<volScalarField> kOmegaSSTSAS::Lvk2
(
const volScalarField& S2
) const
{
return kappa_*sqrt(S2)
/(
mag(fvc::laplacian(U()))
+ dimensionedScalar
(
"ROOTVSMALL",
dimensionSet(0, -1 , -1, 0, 0, 0, 0),
ROOTVSMALL
)
);
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
kOmegaSSTSAS::kOmegaSSTSAS
(
const volVectorField& U,
const surfaceScalarField& phi,
transportModel& transport,
const word& modelName
)
:
LESModel(modelName, U, phi, transport),
alphaK1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"alphaK1",
coeffDict(),
0.85034
)
),
alphaK2_
(
dimensioned<scalar>::lookupOrAddToDict
(
"alphaK2",
coeffDict(),
1.0
)
),
alphaOmega1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"alphaOmega1",
coeffDict(),
0.5
)
),
alphaOmega2_
(
dimensioned<scalar>::lookupOrAddToDict
(
"alphaOmega2",
coeffDict(),
0.85616
)
),
gamma1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"gamma1",
coeffDict(),
0.5532
)
),
gamma2_
(
dimensioned<scalar>::lookupOrAddToDict
(
"gamma2",
coeffDict(),
0.4403
)
),
beta1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"beta1",
coeffDict(),
0.075
)
),
beta2_
(
dimensioned<scalar>::lookupOrAddToDict
(
"beta2",
coeffDict(),
0.0828
)
),
betaStar_
(
dimensioned<scalar>::lookupOrAddToDict
(
"betaStar",
coeffDict(),
0.09
)
),
a1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"a1",
coeffDict(),
0.31
)
),
c1_
(
dimensioned<scalar>::lookupOrAddToDict
(
"c1",
coeffDict(),
10.0
)
),
alphaPhi_
(
dimensioned<scalar>::lookupOrAddToDict
(
"alphaPhi",
coeffDict(),
0.666667
)
),
zetaTilda2_
(
dimensioned<scalar>::lookupOrAddToDict
(
"zetaTilda2",
coeffDict(),
1.755
)
),
FSAS_
(
dimensioned<scalar>::lookupOrAddToDict
(
"FSAS",
coeffDict(),
1.25
)
),
omega0_("omega0", dimless/dimTime, SMALL),
omegaSmall_("omegaSmall", dimless/dimTime, SMALL),
y_(mesh_),
Cmu_
(
dimensioned<scalar>::lookupOrAddToDict
(
"Cmu",
coeffDict(),
0.09
)
),
kappa_
(
dimensioned<scalar>::lookupOrAddToDict
(
"kappa",
*this,
0.4187
)
),
k_
(
IOobject
(
"k",
runTime_.timeName(),
mesh_,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh_
),
omega_
(
IOobject
(
"omega",
runTime_.timeName(),
mesh_,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh_
),
nuSgs_
(
IOobject
(
"nuSgs",
runTime_.timeName(),
mesh_,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh_
)
{
printCoeffs();
}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
void kOmegaSSTSAS::correct(const tmp<volTensorField>& gradU)
{
LESModel::correct(gradU);
if (mesh_.changing())
{
y_.correct();
}
volScalarField S2 = magSqr(symm(gradU()));
gradU.clear();
volVectorField gradK = fvc::grad(k_);
volVectorField gradOmega = fvc::grad(omega_);
volScalarField L = sqrt(k_)/(pow(Cmu_, 0.25)*(omega_ + omegaSmall_));
volScalarField CDkOmega = (2.0*alphaOmega2_)*(gradK & gradOmega)/(omega_ + omegaSmall_);
volScalarField F1 = this->F1(CDkOmega);
volScalarField G = nuSgs_*2.0*S2;
// Turbulent kinetic energy equation
solve
(
fvm::ddt(k_)
+ fvm::div(phi(), k_)
- fvm::Sp(fvc::div(phi()), k_)
- fvm::laplacian(DkEff(F1), k_)
==
min(G, c1_*betaStar_*k_*omega_)
- fvm::Sp(betaStar_*omega_, k_)
);
bound(k_, k0());
volScalarField grad_omega_k = max
(
magSqr(gradOmega)/
sqr(omega_ + omegaSmall_),
magSqr(gradK)/
sqr(k_ + k0())
);
// Turbulent frequency equation
solve
(
fvm::ddt(omega_)
+ fvm::div(phi(), omega_)
- fvm::Sp(fvc::div(phi()), omega_)
- fvm::laplacian(DomegaEff(F1), omega_)
==
gamma(F1)*2.0*S2
- fvm::Sp(beta(F1)*omega_, omega_)
- fvm::SuSp // cross diffusion term
(
(F1 - scalar(1))*CDkOmega/omega_,
omega_
)
+ FSAS_
*max
(
dimensionedScalar("zero",dimensionSet(0, 0 , -2, 0, 0),0. ),
zetaTilda2_*kappa_*S2*(L/Lvk2(S2))- 2.0/alphaPhi_*k_*grad_omega_k
)
);
bound(omega_, omega0_);
// Re-calculate viscosity
nuSgs_ == a1_*k_/max(a1_*omega_, F2()*sqrt(S2));
nuSgs_.correctBoundaryConditions();
}
tmp<volScalarField> kOmegaSSTSAS::epsilon() const
{
return 2.0*nuEff()*magSqr(symm(fvc::grad(U())));
}
tmp<volSymmTensorField> kOmegaSSTSAS::B() const
{
return ((2.0/3.0)*I)*k() - nuSgs()*twoSymm(fvc::grad(U()));
}
tmp<volSymmTensorField> kOmegaSSTSAS::devBeff() const
{
return -nuEff()*dev(twoSymm(fvc::grad(U())));
}
tmp<fvVectorMatrix> kOmegaSSTSAS::divDevBeff(volVectorField& U) const
{
return
(
- fvm::laplacian(nuEff(), U) - fvc::div(nuEff()*dev(fvc::grad(U)().T()))
);
}
bool kOmegaSSTSAS::read()
{
if (LESModel::read())
{
alphaK1_.readIfPresent(coeffDict());
alphaK2_.readIfPresent(coeffDict());
alphaOmega1_.readIfPresent(coeffDict());
alphaOmega2_.readIfPresent(coeffDict());
gamma1_.readIfPresent(coeffDict());
gamma2_.readIfPresent(coeffDict());
beta1_.readIfPresent(coeffDict());
beta2_.readIfPresent(coeffDict());
betaStar_.readIfPresent(coeffDict());
a1_.readIfPresent(coeffDict());
c1_.readIfPresent(coeffDict());
alphaPhi_.readIfPresent(coeffDict());
zetaTilda2_.readIfPresent(coeffDict());
FSAS_.readIfPresent(coeffDict());
return true;
}
else
{
return false;
}
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace LESModels
} // End namespace incompressible
} // End namespace Foam
// ************************************************************************* //

258
src/turbulenceModels/LES/incompressible/kOmegaSSTSAS/kOmegaSSTSAS.H Normal file
View File

@ -0,0 +1,258 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
Class
Foam::LESmodels::kOmegaSSTSAS
Description
kOmegaSSTSAS LES turbulence model for incompressible flows
Note: does not have an explicit dependency on spatial discretisation
i.e. LESdelta not used.
SourceFiles
kOmegaSSTSAS.C
\*---------------------------------------------------------------------------*/
#ifndef kOmegaSSTSAS_H
#define kOmegaSSTSAS_H
#include "LESModel.H"
#include "volFields.H"
#include "wallDist.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
namespace incompressible
{
namespace LESModels
{
/*---------------------------------------------------------------------------*\
Class kOmegaSSTSAS Declaration
\*---------------------------------------------------------------------------*/
class kOmegaSSTSAS
:
public LESModel
{
// Private member functions
// Disallow default bitwise copy construct and assignment
kOmegaSSTSAS(const kOmegaSSTSAS&);
kOmegaSSTSAS& operator=(const kOmegaSSTSAS&);
protected:
// Protected data
// Model constants
dimensionedScalar alphaK1_;
dimensionedScalar alphaK2_;
dimensionedScalar alphaOmega1_;
dimensionedScalar alphaOmega2_;
dimensionedScalar gamma1_;
dimensionedScalar gamma2_;
dimensionedScalar beta1_;
dimensionedScalar beta2_;
dimensionedScalar betaStar_;
dimensionedScalar a1_;
dimensionedScalar c1_;
dimensionedScalar alphaPhi_;
dimensionedScalar zetaTilda2_;
dimensionedScalar FSAS_;
dimensionedScalar omega0_;
dimensionedScalar omegaSmall_;
wallDist y_;
dimensionedScalar Cmu_;
dimensionedScalar kappa_;
// Fields
volScalarField k_;
volScalarField omega_;
volScalarField nuSgs_;
// Protected member functions
tmp<volScalarField> Lvk2
(
const volScalarField& S2
) const;
tmp<volScalarField> F1(const volScalarField& CDkOmega) const;
tmp<volScalarField> F2() const;
tmp<volScalarField> blend
(
const volScalarField& F1,
const dimensionedScalar& psi1,
const dimensionedScalar& psi2
) const
{
return F1*(psi1 - psi2) + psi2;
}
tmp<volScalarField> alphaK
(
const volScalarField& F1
) const
{
return blend(F1, alphaK1_, alphaK2_);
}
tmp<volScalarField> alphaOmega
(
const volScalarField& F1
) const
{
return blend(F1, alphaOmega1_, alphaOmega2_);
}
tmp<volScalarField> beta
(
const volScalarField& F1
) const
{
return blend(F1, beta1_, beta2_);
}
tmp<volScalarField> gamma
(
const volScalarField& F1
) const
{
return blend(F1, gamma1_, gamma2_);
}
public:
//- Runtime type information
TypeName("kOmegaSSTSAS");
// Constructors
//- Constructor from components
kOmegaSSTSAS
(
const volVectorField& U,
const surfaceScalarField& phi,
transportModel& transport,
const word& modelName = typeName
);
//- Destructor
virtual ~kOmegaSSTSAS()
{}
// Member Functions
//- Return SGS kinetic energy
tmp<volScalarField> k() const
{
return k_;
}
//- Return omega
tmp<volScalarField> omega() const
{
return omega_;
}
//- Return the effective diffusivity for k
tmp<volScalarField> DkEff(const volScalarField& F1) const
{
return tmp<volScalarField>
(
new volScalarField("DkEff", alphaK(F1)*nuSgs_ + nu())
);
}
//- Return the effective diffusivity for omega
tmp<volScalarField> DomegaEff(const volScalarField& F1) const
{
return tmp<volScalarField>
(
new volScalarField("DomegaEff", alphaOmega(F1)*nuSgs_ + nu())
);
}
//- Return sub-grid disipation rate
tmp<volScalarField> epsilon() const;
//- Return SGS viscosity
tmp<volScalarField> nuSgs() const
{
return nuSgs_;
}
//- Return the sub-grid stress tensor.
tmp<volSymmTensorField> B() const;
//- Return the effective sub-grid turbulence stress tensor
// including the laminar stress
tmp<volSymmTensorField> devBeff() const;
//- Return the deviatoric part of the divergence of Beff
// i.e. the additional term in the filtered NSE.
tmp<fvVectorMatrix> divDevBeff(volVectorField& U) const;
//- Solve the turbulence equations (k-w) and correct the turbulence viscosity
virtual void correct(const tmp<volTensorField>& gradU);
//- Read turbulenceProperties dictionary
virtual bool read();
};
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace LESModels
} // End namespace incompressible
} // End namespace Foam
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //