Merge branch 'master' of /home/noisy2/OpenFOAM/OpenFOAM-dev

applications/utilities/mesh/conversion/ansysToFoam/ansysToFoam.L

@@ -70,7 +70,11 @@ PtrList<SLList<label> > slPatchCellFaces;
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }
@@ -393,7 +397,7 @@ int main(int argc, char *argv[])
     }
 
     // Warning: tet face order has changed between version 1.9.6 and 2.0
-    // 
+    //
     label faceIndex[7][6] =
     {
         {-1, -1, -1, -1, -1, -1}, // 0

applications/utilities/mesh/conversion/fluent3DMeshToFoam/fluent3DMeshToFoam.L

@@ -116,7 +116,11 @@ void uniquify(word& name, HashSet<word>& patchNames)
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }

applications/utilities/mesh/conversion/fluentMeshToFoam/fluentMeshToFoam.L

@@ -93,7 +93,7 @@ SLList<label> cellGroupEndIndex;
 SLList<label> cellGroupType;
 
 // number of zones adjusted at run-time if necessary
-label maxZoneID = 100; 
+label maxZoneID = 100;
 label zoneIDBuffer = 10;
 
 wordList patchTypeIDs(maxZoneID);
@@ -102,7 +102,11 @@ wordList patchNameIDs(maxZoneID);
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }
@@ -343,7 +347,7 @@ endOfSection               {space}")"{space}
         // In FOAM, indices start from zero - adjust
         pointI = pointGroupStartIndex.last() - 1;
 
-        // reset number of components to default 
+        // reset number of components to default
         pointGroupNumberOfComponents = 3;
 
         // read number of components in the vector
@@ -375,7 +379,7 @@ endOfSection               {space}")"{space}
 
         IStringStream vertexXyzStream(YYText());
 
-        // Note: coordinates must be read one at the time.  
+        // Note: coordinates must be read one at the time.
         scalar x = readScalar(vertexXyzStream);
         scalar y = readScalar(vertexXyzStream);
 
@@ -387,7 +391,7 @@ endOfSection               {space}")"{space}
 
         IStringStream vertexXyzStream(YYText());
 
-        // Note: coordinates must be read one at the time.  
+        // Note: coordinates must be read one at the time.
         scalar x = readScalar(vertexXyzStream);
         scalar y = readScalar(vertexXyzStream);
         scalar z = readScalar(vertexXyzStream);
@@ -587,7 +591,7 @@ endOfSection               {space}")"{space}
 
 
         // Note. Potentially skip cell set if type is zero.
-        // This entry does not exist in Tgrid files. 
+        // This entry does not exist in Tgrid files.
         if (dimensionOfGrid == 2)
         {
             // Tgrid creating triangles
@@ -702,7 +706,7 @@ endOfSection               {space}")"{space}
 
         IStringStream zoneDataStream(YYText());
 
-        // cell zone-ID not in hexadecimal!!! Inconsistency 
+        // cell zone-ID not in hexadecimal!!! Inconsistency
         label zoneID(readLabel(zoneDataStream));
 
         if (zoneID > maxZoneID - 1)
@@ -727,7 +731,7 @@ endOfSection               {space}")"{space}
         // Fluent manual inconsistency, version 6.1.22
         IStringStream zoneDataStream(YYText());
 
-        // cell zone-ID not in hexadecimal!!! Inconsistency 
+        // cell zone-ID not in hexadecimal!!! Inconsistency
         label zoneID(readLabel(zoneDataStream));
 
         if (zoneID > maxZoneID - 1)
@@ -879,7 +883,7 @@ int main(int argc, char *argv[])
     {
         scaleFactor = atof(args.options()["scale"].c_str());
     }
-    
+
     bool writeSets = args.options().found("writeSets");
     bool writeZones = args.options().found("writeZones");
 
@@ -901,7 +905,7 @@ int main(int argc, char *argv[])
 
     Info<< "\n\nFINISHED LEXING\n\n\n";
     // Lookup table giving number of vertices given a fluent cell type ID
-    // Currently not used. 
+    // Currently not used.
     // label fluentModelNVertices[7] = {-1, 3, 4, 4, 8, 5, 6};
 
     // Lookup table giving number of vertices given a fluent cell type ID
@@ -973,7 +977,7 @@ int main(int argc, char *argv[])
         // Note: In order for the owner-neighbour rules to be right, the
         // points given by Fluent need to represent the FRONT plane of the
         // geometry. Therefore, the extrusion will be in -z direction
-        // 
+        //
         forAll (oldPoints, pointI)
         {
             points[nNewPoints] = oldPoints[pointI];
@@ -1131,20 +1135,20 @@ int main(int argc, char *argv[])
 
 
     //make patchless mesh before analysing boundaries
-    
+
     faceListList patches(0);
     wordList patchNames(0);
     wordList patchTypes(0);
     word defaultFacesName = "defaultFaces";
     word defaultFacesType = emptyPolyPatch::typeName;
     wordList patchPhysicalTypes(0);
-    
+
     // Scale the points
-    
+
     points *= scaleFactor;
-    
+
     Info<< "Building patch-less mesh..." << flush;
-    
+
     polyMesh pShapeMesh
     (
         IOobject
@@ -1167,13 +1171,13 @@ int main(int argc, char *argv[])
     //and zones wont be written
     //checkmesh done after patch addition as well
     Info<< "done." << endl;
-    
-    
+
+
     Info<< endl << "Building boundary and internal patches." << endl;
     //adding patches after mesh construction allows topological checks
-    //on whether a patch is internal or external, something fluent 
+    //on whether a patch is internal or external, something fluent
     //doesnt seem to mind
-    
+
     // Make boundary patches
 
     SLList<label>::iterator faceGroupZoneIDIter = faceGroupZoneID.begin();
@@ -1183,7 +1187,7 @@ int main(int argc, char *argv[])
 
     // Note. Not all groups of faces will be boundary patches.
     // Take care on construction
-    
+
     //2D needs extra space for frontAndBack faces
     if (dimensionOfGrid == 2)
     {
@@ -1221,7 +1225,7 @@ int main(int argc, char *argv[])
 
         Info<< "Creating patch " << nPatches
             << " for zone: " << faceGroupZoneIDIter()
-            << " start: " << faceGroupStartIndexIter() 
+            << " start: " << faceGroupStartIndexIter()
             << " end: " << faceGroupEndIndexIter()
             << " type: " << curPatchType << " name: " << curPatchName << endl;
 
@@ -1251,7 +1255,7 @@ int main(int argc, char *argv[])
         }
 
         //inlets and outlets
-        if 
+        if
         (
             curPatchType == "pressure"
          || curPatchType == "pressure-inlet"
@@ -1317,7 +1321,7 @@ int main(int argc, char *argv[])
             Info<< "Patch " << faceGroupZoneIDIter()
                 << ": Faces are defined but "
                 << "not created as a zone." << endl
-                << "Null specification is only valid for internal faces." 
+                << "Null specification is only valid for internal faces."
                 << endl;
 
             patches[nPatches] = patchFaces;
@@ -1346,14 +1350,14 @@ int main(int argc, char *argv[])
         nPatches++;
     }
 
-    //Now have all patch information, 
+    //Now have all patch information,
     //check whether each patch is internal or external
     //and add boundaries to mesh
     //also write face sets of all patches
     patches.setSize(nPatches);
     patchTypes.setSize(nPatches);
     patchNames.setSize(nPatches);
-    
+
 
     //old polyBoundary
     const polyBoundaryMesh& oPatches = pShapeMesh.boundaryMesh();
@@ -1401,12 +1405,12 @@ int main(int argc, char *argv[])
         //if a face is defined as internal but is actually external
         //it will be put in a default wall boundary
         //internal boundaries are simply ignored
-        
+
         if(patchTypes[patchI] != "internal" && !pShapeMesh.isInternalFace(meshFaces[0]))
         {
             //first face is external and has valid non-internal type
 
-            //check all faces for externalness just to be sure 
+            //check all faces for externalness just to be sure
             //and mark patch number to global list
             forAll(meshFaces, i)
             {
@@ -1424,7 +1428,7 @@ int main(int argc, char *argv[])
                 if(facePatchID[faceI - pShapeMesh.nInternalFaces()]!= -1)
                 {
                     FatalErrorIn(args.executable())
-                        << "Face " << faceI << " on new patch " 
+                        << "Face " << faceI << " on new patch "
                         << patchNames[patchI]
                         << " has already been marked for repatching to"
                         << " patch "
@@ -1435,8 +1439,8 @@ int main(int argc, char *argv[])
             }
 
             //add to boundary patch
-            
-            Info<< "Adding new patch " << patchNames[patchI] 
+
+            Info<< "Adding new patch " << patchNames[patchI]
                 << " of type " << patchTypes[patchI]
                 << " as patch " << nBoundaries << endl;
 
@@ -1458,15 +1462,15 @@ int main(int argc, char *argv[])
         }
         else
         {
-            Info<< "Patch " << patchNames[patchI] 
+            Info<< "Patch " << patchNames[patchI]
                  << " is internal to the mesh "
                  << " and is not being added to the boundary."
                  << endl;
-        
+
         }
     }
-    
-    // Check for any remaining boundary faces 
+
+    // Check for any remaining boundary faces
     // and add them to a default wall patch
     // this routine should generally not be invoked
     {
@@ -1480,16 +1484,16 @@ int main(int argc, char *argv[])
             }
         }
         defaultBoundaryFaces.shrink();
-        
+
         if(defaultBoundaryFaces.size() != 0)
         {
             Warning << " fluent mesh has " << defaultBoundaryFaces.size()
                     << " undefined boundary faces." << endl
                     << " Adding undefined faces to new patch `default_wall`"
                     << endl;
-                    
+
             // Add patch to new patch list
-            
+
             newPatches.append
             (
                 polyPatch::New
@@ -1506,11 +1510,11 @@ int main(int argc, char *argv[])
             cMeshFace += defaultBoundaryFaces.size();
         }
     }
-    
+
     newPatches.shrink();
 
     // Use facePatchIDs map to reorder boundary faces into compact regions
-    
+
     repatchPolyTopoChanger repatcher(pShapeMesh);
 
     // Add new list of patches
@@ -1544,11 +1548,11 @@ int main(int argc, char *argv[])
     // Zones
     // will write out cell zones and internal faces for those zones
     // note: zone boundary faces are not added to face zones
-    // the names of boundaries bordering on cell zones are written to 
+    // the names of boundaries bordering on cell zones are written to
     // a list containing the boundary name and cellzone it borders on
     // interior boundaries are handled via faceSets
     // cell zones will only be written if there is more than one
-    
+
     if (writeZones && cellGroupZoneID.size()>1)
     {
         Info<< "Adding Zones" << endl;
@@ -1559,14 +1563,14 @@ int main(int argc, char *argv[])
 
         // Make face zones for cell zones
         List<faceZone*> fz(nrCellZones);
-        
+
         // List of patch names and the cellZone(s) they border
-        // this is just an info file to make MRF easier to setup 
+        // this is just an info file to make MRF easier to setup
         List<DynamicList<word> > boundaryZones
         (
             pShapeMesh.boundaryMesh().size()
         );
-        
+
         const polyBoundaryMesh& bPatches = pShapeMesh.boundaryMesh();
         forAll(bPatches, pI)
         {
@@ -1591,7 +1595,7 @@ int main(int argc, char *argv[])
 
             // Mark zone cells, used for finding faces
             boolList zoneCell(pShapeMesh.nCells(), false);
-            
+
 	        // shift cell indizes by 1
 	        label nr=0;
 	        for (label celli = (start() - 1); celli < end(); celli++)
@@ -1645,11 +1649,11 @@ int main(int argc, char *argv[])
                         break;
                     }
                 }
-            }            
-            
+            }
+
 	        cnt++;
 	    }
-        
+
         pShapeMesh.addZones(pz, fz, cz);
 
         forAll(bPatches, pI)
@@ -1676,10 +1680,10 @@ int main(int argc, char *argv[])
     }
 
     Info<< endl << "Writing mesh..." << flush;
-    
+
     Info<< " to " << pShapeMesh.instance()/pShapeMesh.meshDir()
         << "  " << flush;
-    
+
     pShapeMesh.setInstance(pShapeMesh.instance());
     pShapeMesh.write();
     Info<< "done." << endl << endl;

applications/utilities/mesh/conversion/gambitToFoam/gambitToFoam.L

@@ -78,7 +78,11 @@ label nValuesForPatchFaces = 0;
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }
@@ -308,7 +312,7 @@ mtype                 {space}"MTYPE:"{space}
 
         label nodeI(readLabel(nodeStream));
 
-        // Note: coordinates must be read one at the time.  
+        // Note: coordinates must be read one at the time.
         scalar x = readScalar(nodeStream);
         scalar y = readScalar(nodeStream);
         scalar z = readScalar(nodeStream);
@@ -676,7 +680,7 @@ int main(int argc, char *argv[])
         }
     }
 
-    
+
     labelList pointLookup(maxPointIndex + 1, -1);
 
     forAll (pointMap, pointI)
@@ -806,7 +810,7 @@ int main(int argc, char *argv[])
                     ]
                     [curFaces[faceI] - 1] // this gives a fluent face - 1
                 ];
-                
+
         }
     }
 

etc/bashrc

@@ -63,9 +63,10 @@ export WM_PROJECT_USER_DIR=$HOME/$WM_PROJECT/$USER-$WM_PROJECT_VERSION
 : ${WM_OS:=Unix}; export WM_OS
 
 
-# Compiler (if set to "" use the system compiler)
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-export WM_COMPILER=Gcc43
+# Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
+# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+: ${WM_COMPILER:=Gcc}; export WM_COMPILER
+
 export WM_COMPILER_ARCH=
 export WM_COMPILER_LIB_ARCH=
 
@@ -105,13 +106,11 @@ Linux)
     # compiler specifics
     case `uname -m` in
     i686)
-        # export WM_COMPILER=I32
         ;;
 
     x86_64)
         case $WM_ARCH_OPTION in
         32)
-            # export WM_COMPILER=I64
             export WM_COMPILER_ARCH='-64'
             export WM_CC='gcc'
             export WM_CXX='g++'
@@ -122,7 +121,6 @@ Linux)
         64)
             WM_ARCH=linux64
             export WM_COMPILER_LIB_ARCH=64
-            # export WM_COMPILER=I64
             export WM_CC='gcc'
             export WM_CXX='g++'
             export WM_CFLAGS='-m64 -fPIC'
@@ -144,17 +142,6 @@ Linux)
     esac
     ;;
 
-SunOS)
-    WM_ARCH=solaris
-    ;;
-
-IRIX*)
-    WM_ARCH=sgiN32
-    # export WM_ARCH=sgi64
-    # export WM_COMPILER_LIB_ARCH=/mabi=64
-    export WM_MPLIB=MPI
-    ;;
-
 *)    	# an unsupported operating system
     cat <<USAGE
 

etc/cshrc

@@ -55,9 +55,10 @@ setenv WM_PROJECT_DIR $FOAM_INST_DIR/$WM_PROJECT-$WM_PROJECT_VERSION
 setenv WM_PROJECT_USER_DIR $HOME/$WM_PROJECT/$LOGNAME-$WM_PROJECT_VERSION
 
 
-# Compiler (if set to "" use the system compiler)
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-setenv WM_COMPILER Gcc
+# Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
+# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+if ( ! $?WM_COMPILER ) setenv WM_COMPILER Gcc
+
 setenv WM_COMPILER_ARCH
 setenv WM_COMPILER_LIB_ARCH
 
@@ -102,13 +103,11 @@ case Linux:
 
     switch (`uname -m`)
     case i686:
-        #setenv WM_COMPILER I32
         breaksw
     case x86_64:
         switch ($WM_ARCH_OPTION)
         case 32:
             setenv WM_ARCH linux
-            #setenv WM_COMPILER I32
             setenv WM_COMPILER_ARCH '-64'
             setenv WM_CC 'gcc'
             setenv WM_CXX 'g++'
@@ -140,17 +139,6 @@ case Linux:
     endsw
     breaksw
 
-case SunOS:
-    setenv WM_ARCH solaris
-    breaksw
-
-case IRIX*:
-    setenv WM_ARCH sgiN32
-    # setenv WM_ARCH sgi64
-    # setenv WM_COMPILER_LIB_ARCH /mabi=64
-    setenv WM_MPLIB MPI
-    breaksw
-
 default:
     echo
     echo "Your '$WM_ARCH' operating system is not supported by this release"

etc/settings.csh

@@ -157,7 +157,7 @@ endif
 
 switch ("$WM_MPLIB")
 case OPENMPI:
-    set ompi_version=1.2.6
+    set ompi_version=1.2.5
     setenv OPENMPI_HOME $FOAM_SRC/other/openmpi-$ompi_version
     setenv OPENMPI_ARCH_PATH $OPENMPI_HOME/platforms/$WM_OPTIONS
 

etc/settings.sh

@@ -158,7 +158,7 @@ export FOAMX_CONFIG
 
 case "$WM_MPLIB" in
 OPENMPI)
-    ompi_version=1.2.6
+    ompi_version=1.2.5
     export OPENMPI_HOME=$FOAM_SRC/other/openmpi-$ompi_version
     export OPENMPI_ARCH_PATH=$OPENMPI_HOME/platforms/$WM_OPTIONS
 

src/OpenFOAM/lnInclude/triFace.H

@@ -1 +0,0 @@
-../meshes/meshShapes/triFace/triFace.H

src/OpenFOAM/lnInclude/triFaceI.H

@@ -1 +0,0 @@
-../meshes/meshShapes/triFace/triFaceI.H

src/finiteVolume/finiteVolume/ddtSchemes/CrankNicholsonDdtScheme/CrankNicholsonDdtScheme.C

@@ -21,7 +21,7 @@ License
     You should have received a copy of the GNU General Public License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-    
+
 \*---------------------------------------------------------------------------*/
 
 #include "CrankNicholsonDdtScheme.H"
@@ -69,7 +69,7 @@ CrankNicholsonDdtScheme<Type>::DDt0Field<GeoField>::DDt0Field
 )
 :
     GeoField(io, mesh, dimType),
-    startTimeIndex_(mesh.time().timeIndex()) 
+    startTimeIndex_(mesh.time().timeIndex())
 {}
 
 
@@ -324,7 +324,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
         {
             dimensionedScalar rDtCoef0 = rDtCoef0_(ddt0);
 
-            ddt0.dimensionedInternalField() = 
+            ddt0.dimensionedInternalField() =
             (
                 (rDtCoef0*dt)*(mesh().V0() - mesh().V00())
               - mesh().V00()*offCentre_(ddt0.dimensionedInternalField())
@@ -371,7 +371,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*
                 (
@@ -380,7 +380,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
                 ) - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*
                 (
@@ -461,7 +461,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*rho.value()*
                 (
@@ -470,7 +470,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
                 ) - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*rho.value()*
                 (
@@ -551,7 +551,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*
                 (
@@ -562,7 +562,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdt
                 ) - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*
                 (
@@ -658,7 +658,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*
                 (
@@ -668,7 +668,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
               - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*
                 (
@@ -693,7 +693,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
                  - offCentre_(ddt0());
         }
 
-        fvm.source() = 
+        fvm.source() =
         (
             rDtCoef*vf.oldTime().internalField()
           + offCentre_(ddt0.internalField())
@@ -740,7 +740,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*rho.value()*
                 (
@@ -750,7 +750,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
               - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*rho.value()*
                 (
@@ -775,7 +775,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
                  - offCentre_(ddt0());
         }
 
-        fvm.source() = 
+        fvm.source() =
         (
             rDtCoef*rho.value()*vf.oldTime().internalField()
           + offCentre_(ddt0.internalField())
@@ -823,7 +823,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
         {
             scalar rDtCoef0 = rDtCoef0_(ddt0).value();
 
-            ddt0.internalField() = 
+            ddt0.internalField() =
             (
                 rDtCoef0*
                 (
@@ -835,7 +835,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
               - mesh().V00()*offCentre_(ddt0.internalField())
             )/mesh().V0();
 
-            ddt0.boundaryField() = 
+            ddt0.boundaryField() =
             (
                 rDtCoef0*
                 (
@@ -865,7 +865,7 @@ CrankNicholsonDdtScheme<Type>::fvmDdt
             ) - offCentre_(ddt0());
         }
 
-        fvm.source() = 
+        fvm.source() =
         (
             rDtCoef*rho.oldTime().internalField()*vf.oldTime().internalField()
           + offCentre_(ddt0.internalField())
@@ -930,14 +930,14 @@ CrankNicholsonDdtScheme<Type>::fvcDdtPhiCorr
     {
         if (evaluate(dUdt0))
         {
-            dUdt0 = 
+            dUdt0 =
                 rDtCoef0_(dUdt0)*(U.oldTime() - U.oldTime().oldTime())
               - offCentre_(dUdt0());
         }
 
         if (evaluate(dphidt0))
         {
-            dphidt0 = 
+            dphidt0 =
                 rDtCoef0_(dphidt0)*(phi.oldTime() - phi.oldTime().oldTime())
               - offCentre_(dphidt0());
         }
@@ -1065,7 +1065,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdtPhiCorr
                 )
             );
         }
-        else if 
+        else if
         (
             U.dimensions() == dimVelocity
          && phi.dimensions() == rho.dimensions()*dimVelocity*dimArea
@@ -1117,7 +1117,7 @@ CrankNicholsonDdtScheme<Type>::fvcDdtPhiCorr
                 )
             );
         }
-        else if 
+        else if
         (
             U.dimensions() == rho.dimensions()*dimVelocity
          && phi.dimensions() == rho.dimensions()*dimVelocity*dimArea
@@ -1186,7 +1186,7 @@ tmp<surfaceScalarField> CrankNicholsonDdtScheme<Type>::meshPhi
 
     if (evaluate(meshPhi0))
     {
-        meshPhi0 = 
+        meshPhi0 =
             coef0_(meshPhi0)*mesh().phi().oldTime() - offCentre_(meshPhi0());
     }
 

src/thermophysicalModels/combustion/chemistryReaders/chemkinReader/chemkinLexer.L

@@ -50,7 +50,11 @@ int yyFlexLexer::yylex()
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }

src/triSurface/triSurface/interfaces/STL/readSTLASCII.L

@@ -21,7 +21,7 @@ License
     You should have received a copy of the GNU General Public License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-    
+
 \*---------------------------------------------------------------------------*/
 
 %{
@@ -51,7 +51,11 @@ int yyFlexLexer::yylex()
 // Dummy yywrap to keep yylex happy at compile time.
 // It is called by yylex but is not used as the mechanism to change file.
 // See <<EOF>>
+#if YY_FLEX_SUBMINOR_VERSION < 34
 extern "C" int yywrap()
+#else
+int yyFlexLexer::yywrap()
+#endif
 {
     return 1;
 }
@@ -391,7 +395,8 @@ bool triSurface::readSTLASCII(const fileName& STLfileName)
     // Create the lexer obtaining the approximate number of vertices in the STL
     // from the file size
     STLLexer lexer(&STLstream.stdStream(), Foam::size(STLfileName)/400);
-    while(lexer.lex() != 0);
+    while(lexer.lex() != 0)
+    {}
 
     DynamicList<STLpoint>& STLpoints = lexer.STLpoints();
 

tutorials/Allclean

@@ -30,7 +30,7 @@
 #     
 #------------------------------------------------------------------------------
 
-. CleanFunctions
+. ./CleanFunctions
 
 echo "Cleaning backup files"
 find . -type f \( -name "*~" -o -name "*.bak" \) -exec rm {} \; 

tutorials/CleanFunctions

@@ -54,7 +54,7 @@ cleanTimeDirectories ()
         rm -rf $1/${timeDir} > /dev/null 2>&1
         rm -rf $1/-${timeDir} > /dev/null 2>&1
         zeros=`printf %0${nZeros}d 0`
-        let nZeros=nZeros+1
+        nZeros=$(($nZeros + 1))
     done
     rm -rf $1/{[1-9]*,-[1-9]*,log,log.*,log-*,logSummary.*,.fxLock,*.xml,ParaView*,paraFoam*,*.foam} > /dev/null 2>&1
 }

tutorials/sonicFoam/Allclean

@@ -3,7 +3,6 @@
 currDir=`pwd`
 application=`basename $currDir`
 cases="forwardStep shockTube"
-utility=setShock
 
 tutorialPath=`dirname $0`/..
 . $tutorialPath/CleanFunctions
@@ -15,7 +14,6 @@ do
     then
         rm -rf $case/0
         cp -r $case/0.org $case/0
-        wclean $case/$utility
         cleanSamples $case
     fi
 done 

wmake/rules/linuxGcc43/c

@@ -0,0 +1,16 @@
+.SUFFIXES: .c .h
+
+cWARN        = -Wall
+
+cc          = gcc -m32
+
+include $(RULES)/c$(WM_COMPILE_OPTION)
+
+cFLAGS      = $(GFLAGS) $(cWARN) $(cOPT) $(cDBUG) $(LIB_HEADER_DIRS) -fPIC
+
+ctoo        = $(WM_SCHEDULER) $(cc) $(cFLAGS) -c $$SOURCE -o $@
+
+LINK_LIBS   = $(cDBUG)
+
+LINKLIBSO   = $(cc) -shared
+LINKEXE     = $(cc) -Xlinker -z -Xlinker nodefs

wmake/rules/linuxGcc43/c++

@@ -0,0 +1,21 @@
+.SUFFIXES: .C .cxx .cc .cpp
+
+c++WARN     = -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast
+
+CC          = g++ -m32
+
+include $(RULES)/c++$(WM_COMPILE_OPTION)
+
+ptFLAGS     = -DNoRepository -ftemplate-depth-40
+
+c++FLAGS    = $(GFLAGS) $(c++WARN) $(c++OPT) $(c++DBUG) $(ptFLAGS) $(LIB_HEADER_DIRS) -fPIC -pthread
+
+Ctoo        = $(WM_SCHEDULER) $(CC) $(c++FLAGS) -c $$SOURCE -o $@
+cxxtoo      = $(Ctoo)
+cctoo       = $(Ctoo)
+cpptoo      = $(Ctoo)
+
+LINK_LIBS   = $(c++DBUG)
+
+LINKLIBSO   = $(CC) $(c++FLAGS) -shared
+LINKEXE     = $(CC) $(c++FLAGS)

wmake/rules/linuxGcc43/c++Debug

@@ -0,0 +1,2 @@
+c++DBUG    = -ggdb3 -DFULLDEBUG
+c++OPT      = -O0 -fdefault-inline

wmake/rules/linuxGcc43/c++Opt

@@ -0,0 +1,2 @@
+c++DBUG     = 
+c++OPT      = -O3

wmake/rules/linuxGcc43/cDebug

@@ -0,0 +1,2 @@
+cDBUG       = -ggdb -DFULLDEBUG
+cOPT        = -O1 -finline-functions

wmake/rules/linuxGcc43/general

@@ -0,0 +1,10 @@
+CPP        = /lib/cpp $(GFLAGS)
+LD         = ld -melf_i386
+
+PROJECT_LIBS = -l$(WM_PROJECT) -ldl
+
+include $(GENERAL_RULES)/standard
+
+include $(RULES)/X
+include $(RULES)/c
+include $(RULES)/c++

wmake/rules/linuxGcc43/mplibGAMMA

@@ -0,0 +1,3 @@
+PFLAGS     = 
+PINC       = -I$(GAMMA_ARCH_PATH)/include
+PLIBS      = -L$(GAMMA_ARCH_PATH)/lib -lgamma

wmake/rules/linuxGcc43/mplibLAM

@@ -0,0 +1,3 @@
+PFLAGS     = 
+PINC       = -I$(LAM_ARCH_PATH)/include
+PLIBS      = -L$(LAM_ARCH_PATH)/lib -lmpi -llam -lpthread -lutil

wmake/rules/linuxGcc43/mplibMPICH-GM

@@ -0,0 +1,3 @@
+PFLAGS     =
+PINC       = -I$(MPICH_ARCH_PATH)/include
+PLIBS      = -L$(MPICH_ARCH_PATH)/lib -lmpich -L$(GM_LIB_PATH) -lgm

wmake/rules/linuxIA64Icc/cOpt

@@ -0,0 +1,2 @@
+cDBUG       = 
+cOPT        = -O3

wmake/rules/linuxIcc/X

@@ -0,0 +1,3 @@
+XFLAGS     =
+XINC       = $(XFLAGS) -I/usr/X11R6/include
+XLIBS      = -L/usr/X11R6/lib -lXext -lX11

wmake/rules/linuxIcc/c++Prof

@@ -0,0 +1,2 @@
+c++DBUG    = -pg
+c++OPT     = -O2

wmake/rules/linuxIcc/cProf

@@ -0,0 +1,2 @@
+cDBUG       = -pg
+cOPT        = -O2

wmake/rules/linuxIcc/mplib

@@ -0,0 +1,3 @@
+PFLAGS     = 
+PINC       = 
+PLIBS      = 

wmake/rules/linuxIcc/mplibMPICH

@@ -0,0 +1,3 @@
+PFLAGS     = 
+PINC       = -I$(MPICH_ARCH_PATH)/include
+PLIBS      = -L$(MPICH_ARCH_PATH)/lib -lmpich -lrt

wmake/rules/linuxIcc/mplibOPENMPI

@@ -0,0 +1,3 @@
+PFLAGS     = -DOMPI_SKIP_MPICXX
+PINC       = -I$(OPENMPI_ARCH_PATH)/include
+PLIBS      = -L$(OPENMPI_ARCH_PATH)/lib -lmpi