STYLE: more consistent shell style in tutorial run/clean scripts

bin/foamDistccd

@@ -34,31 +34,31 @@
 #
 #------------------------------------------------------------------------------
 
-printUsage()
+usage()
 {
-    echo "Usage : `basename $0` start|stop|list"
+    echo "Usage : ${0##*/} start|stop|list"
     echo ""
+    exit 1
 }
 
 RSH='ssh'
 
-if [ ! "$DISTCC_HOSTS" ]; then
+if [ ! "$DISTCC_HOSTS" ]
-    echo "`basename $0`: variable DISTCC_HOSTS not set."
+then
-    echo "`basename $0`: please set DISTCC_HOSTS to the list of hosts to use."
+    echo "${0##*/} Warnings"
-    echo "`basename $0`: the format is host1:port host2:port host3:port etc."
+    echo "    variable DISTCC_HOSTS not set."
-    echo ""
+    echo "    please set DISTCC_HOSTS to the list of hosts to use."
+    echo "    the format is host1:port host2:port host3:port etc."
+    echo
 
     exit 1
 fi
 
-if [ $# -ne 1 ]; then
+[ $# -eq 1 ] || usage
-    printUsage
-    exit 1
-fi
 
 
-if [ "$1" = 'start' ]; then
+case "$1" in
-
+start)
     grep -v '^#' /etc/hosts | awk '{print $1, $2 " "}' > ~/filteredHosts.txt
 
     allowIPS=''
@@ -66,7 +66,8 @@ if [ "$1" = 'start' ]; then
     do
         machine=`echo "$host" | awk -F: '{print $1}'`
         iptest=`echo "$machine" | sed -e 's/[0-9.]//g'`
-        if [ ! "$iptest" ]; then
+        if [ ! "$iptest" ]
+        then
             # address only contained 0-9 and '.'. Probably ip address.
             ip=$machine
         else
@@ -74,7 +75,8 @@ if [ "$1" = 'start' ]; then
             ip=`egrep " $machine " ~/filteredHosts.txt | awk '{print $1}'`
         fi
 
-        if [ ! "$ip" ]; then
+        if [ ! "$ip" ]
+        then
             echo "$0 : host specifier $host either is not an ip address or cannot be found in /etc/hosts."
             echo "$0 : Exiting."
             exit 1
@@ -92,7 +94,8 @@ if [ "$1" = 'start' ]; then
         machine=`echo "$host" | awk -F: '{print $1}'`
         port=`echo "$host" | awk -F: '{print $2}'`
 
-        if [ "$machine" -a "$port" ]; then
+        if [ "$machine" -a "$port" ]
+        then
             #echo "Machine:$machine  port:$port"
             echo "distccd --daemon $allowIPS --port $port"' --jobs `egrep "^processor" /proc/cpuinfo | wc -l`'
             $RSH $machine "distccd --verbose --daemon $allowIPS --port $port"' --jobs `egrep "^processor" /proc/cpuinfo | wc -l`'
@@ -102,9 +105,9 @@ if [ "$1" = 'start' ]; then
             exit 1
         fi
     done
+    ;;
 
-elif [ "$1" = 'stop' ]; then
+stop)
-
     for host in $DISTCC_HOSTS
     do
         echo ""
@@ -114,10 +117,9 @@ elif [ "$1" = 'stop' ]; then
 
         $RSH $machine killall distccd
     done
+    ;;
 
-
+list)
-elif [ "$1" = 'list' ]; then
-
     for host in $DISTCC_HOSTS
     do
         echo ""
@@ -127,12 +129,11 @@ elif [ "$1" = 'list' ]; then
 
         $RSH $machine "ps -ef | grep distccd | grep -v grep"
     done
+    ;;
 
-else
+*)
-
+    usage
-    printUsage
+    ;;
-    exit 1
+esac
-
-fi
 
 #------------------------------------------------------------------------------

bin/foamEbrowse

@@ -32,12 +32,13 @@
 #------------------------------------------------------------------------------
 sourcesFile=${TMPDIR:-/tmp}/sourcesFile.$$
 
-if [ $# -ne 0 ]; then
+if [ $# -ne 0 ]
-   echo "Usage : ${0##*/}"
+then
-   echo ""
+    echo "Usage : ${0##*/}"
-   echo "Build the Ebrowse dadbase for all the .H and .C files"
+    echo ""
-   echo ""
+    echo "Build the Ebrowse database for all the .H and .C files"
-   exit 1
+    echo ""
+    exit 1
 fi
 
 # Clean up on termination and on Ctrl-C

bin/tools/CleanFunctions

@@ -29,13 +29,14 @@
 #
 #------------------------------------------------------------------------------
 
-#cleanTimeDirectories ()
+#cleanTimeDirectories()
 #{
 #    echo "Cleaning $case case of $application application"
 #    TIME_DIRS=`foamInfoExec . $1 -times | sed '1,/constant/d'`
 #    for T in $TIME_DIRS
 #    do
-#        if [ $T != "0" ] ; then
+#        if [ $T != "0" ]
+#        then
 #            echo "Deleting directory $T"
 #            rm -rf ${T} > /dev/null 2>&1
 #        fi
@@ -43,12 +44,13 @@
 #    rm -rf {log,log.*,log-*,logSummary.*,.fxLock,*.xml,ParaView*,paraFoam*,*.OpenFOAM} > /dev/null 2>&1
 #}
 
-cleanTimeDirectories ()
+cleanTimeDirectories()
 {
     echo "Cleaning $PWD case"
     nZeros=0
     zeros=""
-    while [ $nZeros -lt 8 ] ; do
+    while [ $nZeros -lt 8 ]
+    do
         timeDir="0.${zeros}[1-9]*"
         rm -rf ${timeDir} > /dev/null 2>&1
         rm -rf ./-${timeDir} > /dev/null 2>&1
@@ -58,7 +60,7 @@ cleanTimeDirectories ()
     rm -rf ./{[1-9]*,-[1-9]*,log,log.*,log-*,logSummary.*,.fxLock,*.xml,ParaView*,paraFoam*,*.OpenFOAM} > /dev/null 2>&1
 }
 
-cleanCase ()
+cleanCase()
 {
     cleanTimeDirectories
     rm -rf processor* > /dev/null 2>&1
@@ -82,23 +84,23 @@ cleanCase ()
     done
 }
 
-removeCase ()
+removeCase()
 {
     echo "Removing $case case"
     rm -rf $1
 }
 
-cleanSamples ()
+cleanSamples()
 {
     rm -rf {sets,samples,sampleSurfaces} > /dev/null 2>&1
 }
 
-cleanUcomponents ()
+cleanUcomponents()
 {
     rm -rf 0/{Ux,Uy,Uz} > /dev/null 2>&1
 }
 
-cleanApplication ()
+cleanApplication()
 {
     echo "Cleaning $PWD application"
     wclean

bin/tools/RunFunctions

@@ -29,17 +29,19 @@
 #
 #------------------------------------------------------------------------------
 
-getApplication ()
+getApplication()
 {
     grep application system/controlDict | sed "s/application *\([a-zA-Z]*\);/\1/"
 }
 
-runApplication ()
+runApplication()
 {
-    APP_RUN=$1; shift
+    APP_RUN=$1
+    shift
     APP_NAME=${APP_RUN##*/}
 
-    if [ -f log.$APP_NAME ] ; then
+    if [ -f log.$APP_NAME ]
+    then
         echo "$APP_NAME already run on $PWD: remove log file to run"
     else
         echo "Running $APP_RUN on $PWD"
@@ -47,11 +49,13 @@ runApplication ()
     fi
 }
 
-runParallel ()
+runParallel()
 {
-    APP_RUN=$1; shift
+    APP_RUN=$1
+    shift
 
-    if [ -f $log.$APP_RUN ] ; then
+    if [ -f $log.$APP_RUN ]
+    then
         echo "$APP_RUN already run on $PWD: remove log file to run"
     else
         echo "Running $APP_RUN in parallel on $PWD using $1 processes"
@@ -59,15 +63,16 @@ runParallel ()
     fi
 }
 
-compileApplication ()
+compileApplication()
 {
     echo "Compiling $1 application"
     wmake $1
 }
 
-cloneCase ()
+cloneCase()
 {
-    if [ -d $2 ] ; then
+    if [ -d $2 ]
+    then
         echo "Case already cloned: remove case directory $2 to clone"
     else
         echo "Cloning $2 case from $1"

bin/tools/inlineReplace

@@ -2,8 +2,9 @@
 
 # $0 string1 string2 file1 .. filen
 #
-if [ $# -lt 3 ]; then
+if [ $# -lt 3 ]
-    echo "Usage: `basename $0` [-f] <string1> <string2> <file1> .. <filen>"
+then
+    echo "Usage: ${0##*/} [-f] <string1> <string2> <file1> .. <filen>"
     echo ""
     echo "Replaces all occurrences of string1 by string2 in files."
     echo "(replacement of sed -i on those systems that don't support it)"
@@ -26,3 +27,5 @@ do
     #    echo "String $FROMSTRING not present in $f"
     #fi
 done
+
+# ----------------------------------------------------------------- end-of-file

bin/tools/replaceAllShellSun

@@ -1,8 +1,9 @@
 #!/usr/xpg4/bin/sh
 
 # Replace all shell script headers with 
-if [ $# -ne 1 -o ! -d "$1" ]; then
+if [ $# -ne 1 -o ! -d "$1" ]
-    echo "Usage: `basename $0` <dir>"
+then
+    echo "Usage: ${0##*/} <dir>"
     echo ""
     echo "Replaces all occurrences of #!/bin/sh with #!/usr/xpg4/bin/sh inside a directory tree."
     exit 1
@@ -13,3 +14,4 @@ fi
 
 find $1 -exec $WM_PROJECT_DIR/bin/tools/inlineReplace '^#\!/bin/sh' '#\!/usr/xpg4/bin/sh' {} \; -print
 
+# ----------------------------------------------------------------- end-of-file

tutorials/Allrun

@@ -36,7 +36,8 @@ cd ${0%/*} || exit 1    # run from this directory
 
 # logReport <logfile>
 # Extracts useful info from log file.
-logReport () {
+logReport()
+{
     caseName=`dirname $1 | sed s/"\(.*\)\.\/"/""/g`
     app=`echo $1 | sed s/"\(.*\)\."/""/g`
     appAndCase="Application $app - case $caseName"
@@ -74,19 +75,18 @@ foamRunTutorials cases
 # Analyse all log files
 rm testLoopReport > /dev/null 2>&1 &
 touch testLoopReport
+
 for appDir in *
 do
-    if [ -d $appDir ]
+(
-    then
+    [ -d $appDir ] && cd $appDir || exit
-    (
+
-        cd $appDir
+    for log in `find . -name "log.*" | xargs ls -rt`
-        for log in `find . -name "log.*" | xargs ls -rt`
+    do
-        do
+        logReport $log >> ../testLoopReport
-            logReport $log >> ../testLoopReport
+    done
-        done
+    echo "" >> ../testLoopReport
-        echo "" >> ../testLoopReport
+)
-    )
-    fi
 done
 
 find . -name "log.*" -exec cat {} \; >> logs

tutorials/Alltest

@@ -32,7 +32,8 @@
 #------------------------------------------------------------------------------
 cd ${0%/*} || exit 1    # run from this directory
 
-usage() {
+usage()
+{
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
@@ -49,7 +50,8 @@ USAGE
 }
 
 
-setDefaultFvSchemes() {
+setDefaultFvSchemes()
+{
 cat<<EOF
 gradSchemes { default Gauss linear; }
 divSchemes
@@ -126,8 +128,12 @@ eval set -- "$OPTS"
 while [ $1 != -- ]
 do
     case $1 in
-        -d) DEFAULT_SCHEMES=1;;
+    -d)
-        -h) usage;;
+        DEFAULT_SCHEMES=1
+        ;;
+    -h)
+        usage
+        ;;
     esac
     shift
 done

tutorials/DNS/dnsFoam/boxTurb16/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 cleanCase
 rm -rf 0
 cp -r 0.org 0
+
+# ----------------------------------------------------------------- end-of-file

tutorials/DNS/dnsFoam/boxTurb16/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication blockMesh
 runApplication boxTurb
 runApplication $application
 runApplication enstrophy
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/laplacianFoam/flange/Allclean

@@ -1,8 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
-rm -rf Fieldview > /dev/null 2>&1
+rm -rf EnSight Ensight Fieldview > /dev/null 2>&1
-rm -rf EnSight > /dev/null 2>&1
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/laplacianFoam/flange/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -20,3 +22,5 @@ runAnsysToFoam flange.ans 0.001
 runApplication $application
 runApplication foamToFieldview9
 runApplication foamToEnsight
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/Allclean

@@ -1,18 +1,25 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd cylinder
+(
+    cd cylinder || exit
+
     cleanCase
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
     wclean analyticalCylinder
-cd ..
+)
+
+
+(
+    cd pitzDaily || exit
 
-cd pitzDaily
     cleanCase
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/cylinder/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication $application
 compileApplication analyticalCylinder
 runApplication analyticalCylinder
 runApplication streamFunction
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/pitzDaily/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication $application
 runApplication streamFunction
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/XiFoam/ras/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,12 +7,18 @@
 keepCases="moriyoshiHomogeneous"
 loseCases="moriyoshiHomogeneousPart2"
 
-for case in $keepCases
+for caseName in $keepCases
 do
-    (cd $case && foamCleanTutorials)
+(
+    cd $caseName || exit
+
+    foamCleanTutorials
+)
 done
 
-for case in $loseCases
+for caseName in $loseCases
 do
-    removeCase $case
+    removeCase $caseName
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/XiFoam/ras/Allrun

@@ -1,12 +1,16 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="XiFoam"
 
-setControlDict () {
+setControlDict()
+{
     controlDict="system/controlDict"
+
     sed \
     -e s/"\(deltaT[ \t]*\) 5e-06;"/"\1 1e-05;"/g \
     -e s/"\(endTime[ \t]*\) 0.005;"/"\1 0.015;"/g \
@@ -15,15 +19,20 @@ setControlDict () {
     mv temp.$$ $controlDict
 }
 
+
 # Do moriyoshiHomogeneous
-(cd moriyoshiHomogeneous && foamRunTutorials)
+( cd moriyoshiHomogeneous && foamRunTutorials )
 
 # Clone case
 cloneCase moriyoshiHomogeneous moriyoshiHomogeneousPart2
 
 # Modify and execute
-cd moriyoshiHomogeneousPart2
+(
+    cd moriyoshiHomogeneousPart2 || exit
+
     cp -r ../moriyoshiHomogeneous/0.005 .
     setControlDict
     runApplication $application
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/engineFoam/kivaTest/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -8,3 +9,5 @@ rm -rf 0
 cp system/controlDict.1st system/controlDict
 cleanCase
 mv temp180 ./-180
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/engineFoam/kivaTest/Allrun

@@ -1,32 +1,42 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Get application name
 application=`getApplication`
 
-runKivaToFoam ()
+runKivaToFoam()
 {
-    if [ -f $1/log.kivaToFoam ] ; then
+    if [ -f log.kivaToFoam ]
-        echo "kivaToFoam already run on $1: remove log file to run"
+    then
+        echo "kivaToFoam already run: remove log file to run"
     else
         echo "kivaToFoam: converting kiva file"
-        kivaToFoam -case $1 -file $2 > $1/log.kivaToFoam 2>&1
+        kivaToFoam -file $1 > log.kivaToFoam 2>&1
     fi
 }
 
-restartApplication ()
+
+restartApplication()
 {
-    if [ -f $2/log-2.$1 ] ; then
+    if [ -f log-2.$1 ]
-        echo "$1 already run on $2: remove log file to run"
+    then
+        echo "$1 already run: remove log file to run"
     else
-        echo "Running $1 on $2"
+        echo "Running $1"
-        $1 -case $2 > $2/log-2.$1 2>&1
+        $1 > log-2.$1 2>&1
     fi
 }
 
-runKivaToFoam . otape17
+
+runKivaToFoam otape17
+
 cp system/controlDict.1st system/controlDict
 runApplication $application
+
 cp system/controlDict.2nd system/controlDict
-restartApplication $application .
+restartApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/fireFoam/les/smallPoolFire2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -10,4 +12,4 @@ runApplication createPatch -overwrite
 # Run
 runApplication fireFoam
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -12,19 +13,25 @@ LadenburgJet60psi \
 biconic25-55Run35 \
 "
 
-for case in $cases
+for caseName in $cases
 do
-    if [ "$case" = "shockTube" ]
+(
+    cd $caseName || exit
+
+    if [ "$caseName" = shockTube ]
     then
-        rm -rf $case/0
+        rm -rf 0
-        cp -r $case/0.org $case/0
+        cp -r 0.org 0
     fi
 
-    (cd $case && foamCleanTutorials && cleanSamples)
+    foamCleanTutorials && cleanSamples
 
-    if [ "$case" = "biconic25-55Run35" ]
+    if [ "$caseName" = "biconic25-55Run35" ]
     then
-        rm -rf $case/constant/polyMesh/boundary
+        rm -rf constant/polyMesh/boundary
-        wclean $case/datToFoam
+        wclean datToFoam
     fi
+)
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -14,26 +16,30 @@ LadenburgJet60psi \
 biconic25-55Run35 \
 "
 
-moveTimeMeshToConstant ()
+moveTimeMeshToConstant()
 {
    DT=`foamInfoExec -times | tail -1`
-   if [ "$DT" != 0 ] ; then
+   if [ "$DT" != 0 ]
+   then
        mv ${DT}/polyMesh/* constant/polyMesh
        rm -rf ${DT}
    fi
 }
 
-for case in $cases
-do
-    (cd $case && runApplication blockMesh)
-#
-    if [ "$case" = "shockTube" ] ; then
-        (cd $case && runApplication setFields)
-    fi
-#
-    if [ "$case" = "biconic25-55Run35" ] ; then
-        cd $case
 
+for caseName in $cases
+do
+(
+    cd $caseName || exit
+
+    runApplication blockMesh
+
+    case "$caseName" in
+    shockTube)
+        runApplication setFields
+        ;;
+
+    biconic25-55Run35)
         wmake datToFoam
         runApplication datToFoam grid256.dat
 
@@ -46,9 +52,11 @@ do
         mv $CONST/polyMesh/boundary $CONST/polyMesh/boundary.bak
         sed -f $CONST/wedgeScr $CONST/polyMesh/boundary.bak > $CONST/polyMesh/boundary
         rm $CONST/polyMesh/boundary.bak
+        ;;
+    esac
 
-        cd ..
+    runApplication $application
-    fi
+)
-#
-    (cd $case && runApplication $application)
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/biconic25-55Run35/sampleCone

@@ -1,43 +1,54 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 #
 # FUNCTIONS
 #
-printUsage () {
+usage()
-cat <<EOF
+{
-Usage: $0 [options]
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
-Runs a set of samples across the cone face and concatenates output files
 
-Options are:
+    cat<<USAGE
--l         -latestTime option for sample
+Usage: ${0##*/} [OPTION]
--h         help
+
-EOF
+options:
+  -l         -latestTime option for sample
+  -h         help
+
+Runs a set of samples across the cone face and concatenates output files
+USAGE
+    exit 1
 }
 
-LATEST_TIME=""
+
+unset timeOpt
 
 OPTS=`getopt hl $*`
-if [ $? -ne 0 ] ; then
+[ $? -eq 0 ] || usage "Aborting due to invalid option"
-    echo "Aborting due to invalid option"
+
-    printUsage
-    exit 1
-fi
 eval set -- "$OPTS"
-while [ $1 != -- ]; do
+while [ $1 != -- ]
+do
     case $1 in
-        -l) LATEST_TIME="-latestTime";;
+    -l)
-        -h) printUsage; exit 1;;
+        timeOpt="-latestTime"
+        ;;
+    -h)
+        usage
+        ;;
     esac
     shift
 done
 shift
 
-sample ${LATEST_TIME}
+sample $timeOpt
 SDIR="sets"
 LSDIR=`ls $SDIR | head -1`
 EXAMPLE_FILE=`ls -1 $SDIR/${LSDIR}/* | head -1`
 FS=`basename $EXAMPLE_FILE | cut -d_ -f2-`
 for d in $SDIR/*
 do
-   cat ${d}/cone25_${FS} ${d}/cone55_${FS} ${d}/base_${FS} > ${d}/biconic_${FS}
+    cat ${d}/cone25_${FS} ${d}/cone55_${FS} ${d}/base_${FS} > ${d}/biconic_${FS}
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoSonicFoam/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -9,3 +11,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhopSonicFoam/shockTube/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 rm -rf 0
 cp -r 0.org 0
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhopSonicFoam/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/laminar/shockTube/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ cleanCase
 rm -rf 0
 cp -r 0.org 0
 cleanSamples
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/laminar/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication setFields
 runApplication $application
 runApplication foamCalc mag U
 runApplication sample
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/ras/nacaAirfoil/Allrun

@@ -1,11 +1,13 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Get application name
 application=`getApplication`
 
-runStarToFoam ()
+runStarToFoam()
 {
     if [ -f log.star3ToFoam -o -f log.starToFoam ]
     then
@@ -24,3 +26,5 @@ rm temp
 runApplication $application
 
 # end-of-file
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicLiquidFoam/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 removeCase decompressionTankFine
 foamCleanTutorials cases
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicLiquidFoam/Allrun

@@ -1,14 +1,17 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="sonicLiquidFoam"
 
-setDecompressionTankFine ()
+setDecompressionTankFine()
 {
-    blockMeshDict="$1/constant/polyMesh/blockMeshDict"
+    blockMeshDict="constant/polyMesh/blockMeshDict"
-    controlDict="$1/system/controlDict"
+    controlDict="system/controlDict"
+
     sed \
     -e s/"30 20"/"120 80"/g \
     -e s/"30 5"/"120 20"/g \
@@ -16,6 +19,7 @@ setDecompressionTankFine ()
     -e s/"30 95"/"120 380"/g \
     $blockMeshDict > temp.$$
     mv temp.$$ $blockMeshDict
+
     sed \
     -e s/"\(deltaT[ \t]*\) 5e-07;"/"\1 1e-07;"/g \
     -e s/"\(endTime[ \t]*\) 0.00025;"/"\1 0.00015;"/g \
@@ -23,16 +27,22 @@ setDecompressionTankFine ()
     mv temp.$$ $controlDict
 }
 
+
 # Do decompressionTank
-(cd decompressionTank && foamRunTutorials)
+( cd decompressionTank && foamRunTutorials )
 
 # Clone case
 cloneCase decompressionTank decompressionTankFine
 
-cd decompressionTankFine
+(
+    cd decompressionTankFine || exit
+
     # Modify case
-    setDecompressionTankFine .
+    setDecompressionTankFine
+
     # And execute
     runApplication blockMesh
     runApplication $application
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpacePeriodic/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpacePeriodic/Allrun

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 runApplication blockMesh
 runApplication dsmcInitialise
 runApplication dsmcFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpaceStream/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpaceStream/Allrun

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 runApplication blockMesh
 runApplication dsmcInitialise
 runApplication dsmcFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/supersonicCorner/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/supersonicCorner/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ runParallel dsmcInitialise 4
 runParallel dsmcFoam 4
 runApplication reconstructPar -noLagrangian
 
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/wedge15Ma5/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/wedge15Ma5/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ runParallel dsmcInitialise 4
 runParallel dsmcFoam 4
 runApplication reconstructPar -noLagrangian
 
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allclean

@@ -1,22 +1,30 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd periodicCubeArgon
+(
+    cd periodicCubeArgon || exit
+
     rm -rf 0/*
     rm -f Ar-Ar
     rm -f electrostatic
     rm -f constant/idList
     rm -rf constant/polyMesh/sets
     cleanCase
-cd ..
+)
+
+
+(
+    cd periodicCubeWater || exit
 
-cd periodicCubeWater
     rm -rf 0/*
     rm -f O-O
     rm -f electrostatic
     rm -f constant/idList
     rm -rf constant/polyMesh/sets
     cleanCase
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allrun

@@ -1,18 +1,20 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 application="mdEquilibrationFoam"
 
-cd periodicCubeArgon
+for caseName in periodicCubeArgon periodicCubeWater
-    runApplication blockMesh
+do
-    runApplication mdInitialise
+(
-    runApplication $application
+    cd $caseName || exit
-cd ..
 
-cd periodicCubeWater
     runApplication blockMesh
     runApplication mdInitialise
     runApplication $application
-cd ..
+)
+done
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdFoam/nanoNozzle/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 rm -rf constant/polyMesh/sets
 rm -rf processor[0-9]
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdFoam/nanoNozzle/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -13,3 +15,5 @@ runParallel mdInitialise 4
 runParallel $application 4
 
 runApplication reconstructPar
+
+# ----------------------------------------------------------------- end-of-file

tutorials/electromagnetics/mhdFoam/Allclean

@@ -1,7 +1,14 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-(cd hartmann && cleanCase)
+(
-(cd hartmann && cleanSamples)
+    cd hartmann || exit
+
+    cleanCase
+    cleanSamples
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/electromagnetics/mhdFoam/Allrun

@@ -1,11 +1,19 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="mhdFoam"
 
-(cd hartmann && runApplication blockMesh)
+(
-(cd hartmann && runApplication $application)
+    cd hartmann || exit
-(cd hartmann && runApplication foamCalc components U)
+
-(cd hartmann && runApplication sample)
+    runApplication blockMesh
+    runApplication $application
+    runApplication foamCalc components U
+    runApplication sample
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqPisoFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqPisoFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/iglooWithFridges/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,4 @@ runApplication blockMesh
 runApplication snappyHexMesh -overwrite
 runApplication buoyantBoussinesqSimpleFoam
 
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantPisoFoam/hotRoom/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 cleanCase
 cp 0/T.org 0/T
 wclean setHotRoom
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantPisoFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ compileApplication setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/Allclean

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf sets
-(cd validation && rm -f *.eps)
+rm -f validation/*.eps
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,4 +10,7 @@ application="buoyantSimpleFoam"
 runApplication blockMesh
 runApplication $application
 runApplication sample -latestTime
-(cd validation && ./createGraphs)
+
+( cd validation && ./createGraphs )
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/validation/createGraphs

@@ -32,7 +32,8 @@
 #
 #------------------------------------------------------------------------------
 
-createEpsT() {
+createEpsT()
+{
     index=$1
     OF=$2
     EXPT=$3
@@ -54,7 +55,8 @@ EOF
 }
 
 
-createEpsU() {
+createEpsU()
+{
     index=$1
     OF=$2
     EXPT=$3
@@ -78,7 +80,8 @@ EOF
 
 # test if gnuplot exists on the system
 type -P gnuplot &>/dev/null || {
-    echo "gnuplot not found - skipping graph creation" >&2; exit 1;
+    echo "gnuplot not found - skipping graph creation" >&2
+    exit 1
 }
 
 # paths to data
@@ -89,7 +92,8 @@ EXPTDATAROOT=./exptData
 
 # generate temperature profiles
 TSets="1 3 4 5 6 7 9"
-for i in $TSets; do
+for i in $TSets
+do
     echo "    processing temperature profile at y/yMax of 0.$i"
 
     OF="$OFDATAROOT/y0.${i}_T.xy"
@@ -101,7 +105,8 @@ done
 
 # generate velocity profiles
 USets="1 3 4 5 6 7 9"
-for i in $USets; do
+for i in $USets
+do
     echo "    processing velocity profile at y/yMax of 0.$i"
 
     OF="$OFDATAROOT/y0.${i}_U.xy"
@@ -110,6 +115,6 @@ for i in $USets; do
     createEpsU $i $OF $EXPT
 done
 
-echo "done"
+echo Done
 
 #------------------------------------------------------------------------------

tutorials/heatTransfer/buoyantSimpleFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/multiRegionHeater/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -18,4 +19,4 @@ rm -rf constant/heater/polyMesh
 rm -rf constant/leftSolid/polyMesh
 rm -rf constant/rightSolid/polyMesh
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/multiRegionHeater/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -58,4 +60,4 @@ do
    paraFoam -touch -region $i
 done
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/snappyMultiRegionHeater/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -18,4 +19,4 @@ rm -rf constant/heater/polyMesh
 rm -rf constant/leftSolid/polyMesh
 rm -rf constant/rightSolid/polyMesh
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/snappyMultiRegionHeater/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -55,4 +57,4 @@ do
    paraFoam -touch -region $i
 done
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/MRFSimpleFoam/mixerVessel2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -7,3 +9,5 @@ application=`getApplication`
 
 ./makeMesh
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ cleanCase
 
 rm -rf logs
 rm -f *.eps yPlus_vs_uPlus
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -9,7 +10,8 @@ exponents="2 3 4 5 6 7 8"
 
 echo "# yPlus vs uPlus" > yPlus_vs_uPlus
 
-for e in $exponents; do
+for e in $exponents
+do
     echo "    Setting nu to 1e-$e"
 
     sed "s/XXX/$e/g" constant/transportProperties.template \
@@ -25,7 +27,8 @@ for e in $exponents; do
 
     mv log.foamLog log.foamLog_$e
 
-    if [ -e logs/yPlus_0 ]; then
+    if [ -e logs/yPlus_0 ]
+    then
         yPlus=`awk < logs/yPlus_0 'END{print $2}'`
         uPlus=`awk < logs/uPlus_0 'END{print $2}'`
 
@@ -39,7 +42,8 @@ done
 # create validation plot
 # test if gnuplot exists on the system
 type -P gnuplot &>/dev/null || {
-    echo "gnuplot not found - skipping graph creation" >&2; exit 1;
+    echo "gnuplot not found - skipping graph creation" >&2
+    exit 1
 }
 graphName="OF_vs_ANAYTICAL.eps"
 
@@ -65,5 +69,6 @@ gnuplot<<EOF
         "yPlus_vs_uPlus" title "OpenFOAM" with points lt 1 pt 6
 EOF
 
+echo Done
 
-echo "done"
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/channelFoam/channel395/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication $application
 runApplication postChannel
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/icoFoam/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,17 +7,23 @@
 keepCases="cavity cavityGrade cavityClipped elbow"
 loseCases="cavityFine cavityHighRe"
 
-for case in $keepCases
+for caseName in $keepCases
 do
-    (cd $case && foamCleanTutorials)
+(
+    cd $caseName || exit
 
-    if [ "$case" = "elbow" ]
+    foamCleanTutorials
+
+    if [ "$caseName" = elbow ]
     then
-        rm -rf $case/fluentInterface
+        rm -rf fluentInterface
     fi
+)
 done
 
-for case in $loseCases
+for caseName in $loseCases
 do
-    removeCase $case
+    removeCase $caseName
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/icoFoam/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,34 +9,34 @@ application="icoFoam"
 
 cavityCases="cavity cavityFine cavityGrade cavityHighRe cavityClipped"
 
-runMapFields ()
+runMapFields()
 {
     echo "Running mapFields from $1 to $2"
     mapFields $1 -case $2 -sourceTime latestTime > $2/log.mapFields 2>&1
 }
 
-runMapFieldsConsistent ()
+runMapFieldsConsistent()
 {
     echo "Running mapFields from $1 to $2"
     mapFields $1 -case $2 -sourceTime latestTime -consistent > $2/log.mapFields 2>&1
 }
 
-runFluentMeshToFoam ()
+runFluentMeshToFoam()
 {
     echo "fluentMeshToFoam: converting mesh $2"
     fluentMeshToFoam $2 -case $1 > $1/log.fluentMeshToFoam 2>&1
 }
 
-copySolutionDirs ()
+copySolutionDirs()
 {
     echo "Copying $2/0* directory to $1"
     cp -r $2/0* $1
 }
 
-setCavityFine ()
+setCavityFine()
 {
-    blockMeshDict="$case/constant/polyMesh/blockMeshDict"
+    blockMeshDict="$caseName/constant/polyMesh/blockMeshDict"
-    controlDict="$case/system/controlDict"
+    controlDict="$caseName/system/controlDict"
     sed s/"20 20 1"/"41 41 1"/g $blockMeshDict > temp.$$
     mv temp.$$ $blockMeshDict
     sed \
@@ -47,11 +49,11 @@ setCavityFine ()
     mv temp.$$ $controlDict
 }
 
-setCavityHighRe ()
+setCavityHighRe()
 {
     echo "Setting cavityHighRe to generate a secondary vortex"
-    controlDict="$case/system/controlDict"
+    controlDict="$caseName/system/controlDict"
-    transportProperties="$case/constant/transportProperties"
+    transportProperties="$caseName/constant/transportProperties"
     sed \
     -e s/"\(startFrom[ \t]*\) startTime;"/"\1 latestTime;"/g \
     -e s/"\(endTime[ \t]*\) 0.5;"/"\1 2.0;"/g \
@@ -61,47 +63,53 @@ setCavityHighRe ()
     mv temp.$$ $transportProperties
 }
 
-for case in $cavityCases
+
+for caseName in $cavityCases
 do
-    if [ "$case" = "cavityFine" ]
+    if [ "$caseName" = cavityFine ]
     then
-        cloneCase cavity $case
+        cloneCase cavity $caseName
         setCavityFine
     fi
 
-    if [ "$case" = "cavityHighRe" ]
+    if [ "$caseName" = cavityHighRe ]
     then
-        cloneCase cavity $case
+        cloneCase cavity $caseName
         setCavityHighRe
-        copySolutionDirs $case cavity
+        copySolutionDirs $caseName cavity
     fi
 
-    (cd $case && runApplication blockMesh)
+    ( cd $caseName && runApplication blockMesh )
-#
-    if [ "$case" = "cavityFine" -o "$case" = "cavityGrade" ]
-    then
-        runMapFieldsConsistent $previousCase $case
-    fi
 
-    if [ "$case" = "cavityClipped" ]
+    case "$caseName" in
-    then
+    cavityFine | cavityGrade)
-        cp -r $case/0 $case/0.5
+        runMapFieldsConsistent $previousCase $caseName
-        runMapFields cavity $case
+        ;;
-        if [ ".`grep nonuniform $case/0.5/U`" != "." ]
+    cavityClipped)
+        cp -r $caseName/0 $caseName/0.5
+        runMapFields cavity $caseName
+        if [ ".`grep nonuniform $caseName/0.5/U`" != "." ]
         then
-            sed -f resetFixedWallsScr $case/0.5/U > $case/0.5/U.temp
+            sed -f resetFixedWallsScr $caseName/0.5/U > $caseName/0.5/U.temp
-            mv $case/0.5/U.temp $case/0.5/U
+            mv $caseName/0.5/U.temp $caseName/0.5/U
         fi
-    fi
+        ;;
-#
+    esac
-    previousCase="$case"
+
-#
+    previousCase="$caseName"
-    (cd $case && runApplication $application)
+    ( cd $caseName && runApplication $application )
 done
 
 # elbow case for testing Fluent-FOAM conversion tools
 
 runFluentMeshToFoam elbow elbow/elbow.msh
-(cd elbow && runApplication $application)
+
-(cd elbow && runApplication foamMeshToFluent)
+(
-(cd elbow && runApplication foamDataToFluent)
+    cd elbow || exit
+
+    runApplication $application
+    runApplication foamMeshToFluent
+    runApplication foamDataToFluent
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/pisoFoam/les/pitzDailyDirectMapped/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication changeDictionary
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/airFoil2D/Allclean

@@ -1,6 +1,9 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Clean time folders only
 
 rm -rf *[1-9]*
 rm -f log.* 2>/dev/null
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/airFoil2D/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -6,3 +7,5 @@
 application=`getApplication`
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/motorBike/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,4 @@ runApplication blockMesh
 runApplication snappyHexMesh -overwrite
 runApplication simpleFoam
 
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/coalChemistryFoam/simplifiedSiwek/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -12,3 +13,5 @@ runApplication blockMesh
 runApplication cellSet
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/filter/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -13,3 +14,5 @@ rm -rf postProcessing
 
 # copy 0.org to 0
 cp -r 0.org 0
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/filter/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -22,3 +23,5 @@ createBaffles cycLeft cycLeft -overwrite >& log.createBaffles1
 createBaffles cycRight cycRight -overwrite >& log.createBaffles2
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/verticalChannel/Allclean

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
@@ -11,3 +13,4 @@ cp -r 0.org 0
 
 cleanCase
 
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/verticalChannel/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -11,3 +13,5 @@ rm -f 0/phi
 
 # run the solver
 runApplication porousExplicitSourceReactingParcelFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/mesh/snappyHexMesh/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 exit 0
 
@@ -7,3 +8,4 @@ exit 0
 
 # This dummy Allrun script avoids meshing these cases twice.
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/les/Allclean

@@ -1,17 +1,23 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd throttle
+(
+    cd throttle || exit
+
     rm -rf constant/polyMesh/sets > /dev/null 2>&1
     rm -rf 0/polyMesh > /dev/null 2>&1
     rm system/cellSetDict > /dev/null 2>&1
 
     cleanCase
-cd ..
+)
+
+
+(
+    cd throttle3D || exit
 
-cd throttle3D
     rm -rf constant/polyMesh/sets > /dev/null 2>&1
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
@@ -19,5 +25,6 @@ cd throttle3D
     rm -rf processor[0-9] > /dev/null 2>&1
 
     cleanCase
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/les/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -20,13 +21,19 @@ refineMeshByCellSet()
    done
 }
 
-cd throttle
+
+(
+    cd throttle || exit
+
     runApplication blockMesh
     refineMeshByCellSet 1 2 3
     runApplication $application
-cd ..
+)
+
+
+(
+    cd throttle3D || exit
 
-cd throttle3D
     cp -r 0.org 0
 
     runApplication blockMesh
@@ -38,5 +45,6 @@ cd throttle3D
     runApplication decomposePar
     runParallel $application 4
     runApplication reconstructPar
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/ras/throttle/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ rm -rf constant/polyMesh/sets > /dev/null 2>&1
 rm -rf 0/polyMesh > /dev/null 2>&1
 rm system/cellSetDict > /dev/null 2>&1
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/ras/throttle/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -23,3 +24,4 @@ runApplication blockMesh
 refineMeshByCellSet 1 2 3
 runApplication $application
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -10,3 +12,5 @@ cp 0/alpha1.org 0/alpha1
 cp 0/p.org 0/p
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge3D/Allclean

@@ -1,5 +1,8 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf processor*
 rm -rf 0/p.gz 0/alpha1.gz
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge3D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -12,3 +14,5 @@ runApplication setFields
 runApplication decomposePar
 runParallel $application 4
 runApplication reconstructPar
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/damBreakWithObstacle/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication setSet -batch createObstacle.setSet
 runApplication subsetMesh c0 -patch walls
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/floatingObject/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -8,3 +9,4 @@ rm -rf 0 > /dev/null 2>&1
 
 cleanCase
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/floatingObject/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -24,4 +25,4 @@ cp -r 0.org 0 > /dev/null 2>&1
 runApplication setFields
 runApplication $application
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D3DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D3DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D3DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D3DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D6DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D6DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/testTubeMixer/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/testTubeMixer/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interFoam/MRFInterFoam/mixerVessel2D/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -7,3 +8,5 @@ application=`getApplication`
 
 runApplication ./makeMesh
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file