From 9a49cf746f46f871d8986c4340488f89a28e55e6 Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Mon, 5 Mar 2012 16:37:28 +0000
Subject: [PATCH 1/7] COMP: zoltanRenumber: do not link against static
 libzoltan.a

---
 src/renumber/zoltanRenumber/Make/options | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/renumber/zoltanRenumber/Make/options b/src/renumber/zoltanRenumber/Make/options
index ef48897a08..c637f39ba9 100644
--- a/src/renumber/zoltanRenumber/Make/options
+++ b/src/renumber/zoltanRenumber/Make/options
@@ -9,5 +9,5 @@ EXE_INC = \
     -I$(LIB_SRC)/meshTools/lnInclude
 
 LIB_LIBS = \
-    -L$(ZOLTAN_ARCH_PATH)/lib -lzoltan \
+    /* -L$(ZOLTAN_ARCH_PATH)/lib -lzoltan */ \
     -lmeshTools

From 42069b50777b5ecd4a588f8408832aaf9b8b7946 Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Tue, 6 Mar 2012 16:38:51 +0000
Subject: [PATCH 2/7] ENH: multiSolidBodyMotionFvMesh: multiple solid body
 rotations

---
 src/dynamicFvMesh/Make/files                  |   1 +
 .../multiSolidBodyMotionFvMesh.C              | 219 ++++++++++++++++++
 .../multiSolidBodyMotionFvMesh.H              | 115 +++++++++
 .../solidBodyMotionFvMesh.C                   |   4 +-
 4 files changed, 337 insertions(+), 2 deletions(-)
 create mode 100644 src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.C
 create mode 100644 src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.H

diff --git a/src/dynamicFvMesh/Make/files b/src/dynamicFvMesh/Make/files
index ecfb8bc9f7..31036fca6e 100644
--- a/src/dynamicFvMesh/Make/files
+++ b/src/dynamicFvMesh/Make/files
@@ -6,6 +6,7 @@ dynamicInkJetFvMesh/dynamicInkJetFvMesh.C
 dynamicRefineFvMesh/dynamicRefineFvMesh.C
 
 solidBodyMotionFvMesh/solidBodyMotionFvMesh.C
+solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.C
 solidBodyMotionFunctions = solidBodyMotionFvMesh/solidBodyMotionFunctions
 $(solidBodyMotionFunctions)/solidBodyMotionFunction/solidBodyMotionFunction.C
 $(solidBodyMotionFunctions)/solidBodyMotionFunction/solidBodyMotionFunctionNew.C
diff --git a/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.C b/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.C
new file mode 100644
index 0000000000..d5d37fc4bc
--- /dev/null
+++ b/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.C
@@ -0,0 +1,219 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "multiSolidBodyMotionFvMesh.H"
+#include "addToRunTimeSelectionTable.H"
+#include "volFields.H"
+#include "transformField.H"
+#include "cellZoneMesh.H"
+#include "boolList.H"
+#include "syncTools.H"
+
+// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    defineTypeNameAndDebug(multiSolidBodyMotionFvMesh, 0);
+    addToRunTimeSelectionTable
+    (
+        dynamicFvMesh,
+        multiSolidBodyMotionFvMesh,
+        IOobject
+    );
+}
+
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+Foam::multiSolidBodyMotionFvMesh::multiSolidBodyMotionFvMesh(const IOobject& io)
+:
+    dynamicFvMesh(io),
+    dynamicMeshCoeffs_
+    (
+        IOdictionary
+        (
+            IOobject
+            (
+                "dynamicMeshDict",
+                io.time().constant(),
+                *this,
+                IOobject::MUST_READ_IF_MODIFIED,
+                IOobject::NO_WRITE,
+                false
+            )
+        ).subDict(typeName + "Coeffs")
+    ),
+    undisplacedPoints_
+    (
+        IOobject
+        (
+            "points",
+            io.time().constant(),
+            meshSubDir,
+            *this,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE,
+            false
+        )
+    )
+{
+    if (undisplacedPoints_.size() != nPoints())
+    {
+        FatalIOErrorIn
+        (
+            "multiSolidBodyMotionFvMesh::multiSolidBodyMotionFvMesh"
+            "(const IOobject&)",
+            dynamicMeshCoeffs_
+        )   << "Read " << undisplacedPoints_.size()
+            << " undisplaced points from " << undisplacedPoints_.objectPath()
+            << " but the current mesh has " << nPoints()
+            << exit(FatalIOError);
+    }
+
+
+    zoneIDs_.setSize(dynamicMeshCoeffs_.size());
+    SBMFs_.setSize(dynamicMeshCoeffs_.size());
+    pointIDs_.setSize(dynamicMeshCoeffs_.size());
+    label zoneI = 0;
+
+    forAllConstIter(dictionary, dynamicMeshCoeffs_, iter)
+    {
+        if (iter().isDict())
+        {
+            zoneIDs_[zoneI] = cellZones().findZoneID(iter().keyword());
+
+            if (zoneIDs_[zoneI] == -1)
+            {
+                FatalIOErrorIn
+                (
+                    "multiSolidBodyMotionFvMesh::"
+                    "multiSolidBodyMotionFvMesh(const IOobject&)",
+                    dynamicMeshCoeffs_
+                )   << "Cannot find cellZone named " << iter().keyword()
+                    << ". Valid zones are " << cellZones().names()
+                    << exit(FatalIOError);
+            }
+
+            const dictionary& subDict = iter().dict();
+
+            SBMFs_.set
+            (
+                zoneI,
+                solidBodyMotionFunction::New(subDict, io.time())
+            );
+
+            // Collect points of cell zone.
+            const cellZone& cz = cellZones()[zoneIDs_[zoneI]];
+
+            boolList movePts(nPoints(), false);
+
+            forAll(cz, i)
+            {
+                label cellI = cz[i];
+                const cell& c = cells()[cellI];
+                forAll(c, j)
+                {
+                    const face& f = faces()[c[j]];
+                    forAll(f, k)
+                    {
+                        label pointI = f[k];
+                        movePts[pointI] = true;
+                    }
+                }
+            }
+
+            syncTools::syncPointList(*this, movePts, orEqOp<bool>(), false);
+
+            DynamicList<label> ptIDs(nPoints());
+            forAll(movePts, i)
+            {
+                if (movePts[i])
+                {
+                    ptIDs.append(i);
+                }
+            }
+
+            pointIDs_[zoneI].transfer(ptIDs);
+
+            Info<< "Applying solid body motion " << SBMFs_[zoneI].type()
+                << " to " << pointIDs_[zoneI].size() << " points of cellZone "
+                << iter().keyword() << endl;
+
+            zoneI++;
+        }
+    }
+    zoneIDs_.setSize(zoneI);
+    SBMFs_.setSize(zoneI);
+    pointIDs_.setSize(zoneI);
+}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::multiSolidBodyMotionFvMesh::~multiSolidBodyMotionFvMesh()
+{}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+bool Foam::multiSolidBodyMotionFvMesh::update()
+{
+    static bool hasWarned = false;
+
+    pointField transformedPts(undisplacedPoints_);
+
+    forAll(zoneIDs_, i)
+    {
+        const labelList& zonePoints = pointIDs_[i];
+
+        UIndirectList<point>(transformedPts, zonePoints) =
+            transform
+            (
+                SBMFs_[i].transformation(),
+                pointField(transformedPts, zonePoints)
+            );
+    }
+
+    fvMesh::movePoints(transformedPts);
+
+    if (foundObject<volVectorField>("U"))
+    {
+        const_cast<volVectorField&>(lookupObject<volVectorField>("U"))
+            .correctBoundaryConditions();
+    }
+    else if (!hasWarned)
+    {
+        hasWarned = true;
+
+        WarningIn("multiSolidBodyMotionFvMesh::update()")
+            << "Did not find volVectorField U."
+            << " Not updating U boundary conditions." << endl;
+    }
+
+    return true;
+}
+
+
+// ************************************************************************* //
diff --git a/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.H b/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.H
new file mode 100644
index 0000000000..3c36131d97
--- /dev/null
+++ b/src/dynamicFvMesh/solidBodyMotionFvMesh/multiSolidBodyMotionFvMesh.H
@@ -0,0 +1,115 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::multiSolidBodyMotionFvMesh
+
+Description
+    Solid-body motion of the mesh specified by a run-time selectable
+    motion function.
+
+SourceFiles
+    multiSolidBodyMotionFvMesh.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef multiSolidBodyMotionFvMesh_H
+#define multiSolidBodyMotionFvMesh_H
+
+#include "dynamicFvMesh.H"
+#include "dictionary.H"
+#include "pointIOField.H"
+#include "solidBodyMotionFunction.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                   Class multiSolidBodyMotionFvMesh Declaration
+\*---------------------------------------------------------------------------*/
+
+class multiSolidBodyMotionFvMesh
+:
+    public dynamicFvMesh
+{
+    // Private data
+
+        //- Dictionary of motion control parameters
+        const dictionary dynamicMeshCoeffs_;
+
+        //- The motion control function
+        PtrList<solidBodyMotionFunction> SBMFs_;
+
+        //- The reference points which are transformed
+        pointIOField undisplacedPoints_;
+
+        //- Specified cellZones
+        labelList zoneIDs_;
+
+        //- Points to move per cellZone
+        labelListList pointIDs_;
+
+
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        multiSolidBodyMotionFvMesh(const multiSolidBodyMotionFvMesh&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const multiSolidBodyMotionFvMesh&);
+
+
+public:
+
+    //- Runtime type information
+    TypeName("multiSolidBodyMotionFvMesh");
+
+
+    // Constructors
+
+        //- Construct from IOobject
+        multiSolidBodyMotionFvMesh(const IOobject& io);
+
+
+    //- Destructor
+    ~multiSolidBodyMotionFvMesh();
+
+
+    // Member Functions
+
+        //- Update the mesh for both mesh motion and topology change
+        virtual bool update();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //
diff --git a/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFvMesh.C b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFvMesh.C
index 99ac356481..5bb0617b06 100644
--- a/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFvMesh.C
+++ b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFvMesh.C
@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -86,7 +86,7 @@ Foam::solidBodyMotionFvMesh::solidBodyMotionFvMesh(const IOobject& io)
         )   << "Read " << undisplacedPoints_.size()
             << " undisplaced points from " << undisplacedPoints_.objectPath()
             << " but the current mesh has " << nPoints()
-            << exit(FatalError);
+            << exit(FatalIOError);
     }
 
     word cellZoneName =

From 129d1224e82a5f751d65dd012443ce984ec0a30e Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Wed, 7 Mar 2012 09:27:42 +0000
Subject: [PATCH 3/7] BUG: renumberMesh: multiple processor faces on cells

---
 .../manipulation/renumberMesh/renumberMesh.C  | 19 +++++++++++--------
 .../renumberMesh/renumberMeshDict             |  6 ++++++
 2 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C b/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
index c0d8982880..1dfb6ae3ca 100644
--- a/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
+++ b/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
@@ -717,7 +717,6 @@ int main(int argc, char *argv[])
             Info<< "Writing renumber maps (new to old) to polyMesh." << nl
                 << endl;
         }
-
     }
     else
     {
@@ -889,8 +888,6 @@ int main(int argc, char *argv[])
             mesh,
             mesh.cellCentres()
         );
-        labelList reverseCellOrder = invert(mesh.nCells(), cellOrder);
-
 
         if (sortCoupledFaceCells)
         {
@@ -907,8 +904,10 @@ int main(int argc, char *argv[])
                 }
             }
 
+            labelList reverseCellOrder = invert(mesh.nCells(), cellOrder);
+
+            labelList bndCells(nBndCells);
             labelList bndCellMap(nBndCells);
-            labelList bndCells(bndCellMap);
             nBndCells = 0;
             forAll(pbm, patchI)
             {
@@ -918,15 +917,19 @@ int main(int argc, char *argv[])
                     forAll(faceCells, i)
                     {
                         label cellI = faceCells[i];
-                        bndCells[nBndCells] = cellI;
-                        bndCellMap[nBndCells++] = reverseCellOrder[cellI];
+
+                        if (reverseCellOrder[cellI] != -1)
+                        {
+                            bndCells[nBndCells] = cellI;
+                            bndCellMap[nBndCells++] = reverseCellOrder[cellI];
+                            reverseCellOrder[cellI] = -1;
+                        }
                     }
                 }
             }
             bndCells.setSize(nBndCells);
             bndCellMap.setSize(nBndCells);
 
-
             // Sort
             labelList order;
             sortedOrder(bndCellMap, order);
@@ -942,7 +945,7 @@ int main(int argc, char *argv[])
             }
 
             Info<< "Ordered all " << nBndCells << " cells with a coupled face"
-                << "  to the end of the cell list, starting at " << sortedI
+                << " to the end of the cell list, starting at " << sortedI
                 << endl;
 
             // Compact
diff --git a/applications/utilities/mesh/manipulation/renumberMesh/renumberMeshDict b/applications/utilities/mesh/manipulation/renumberMesh/renumberMeshDict
index b3393b10e3..229a250352 100644
--- a/applications/utilities/mesh/manipulation/renumberMesh/renumberMeshDict
+++ b/applications/utilities/mesh/manipulation/renumberMesh/renumberMeshDict
@@ -90,4 +90,10 @@ zoltanCoeffs
 }
 
 
+//boundaryFirstCoeffs
+//{
+//    reverse true;
+//}
+
+
 // ************************************************************************* //

From f254714829381cbbc200072678e555976e550815 Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Wed, 7 Mar 2012 11:48:20 +0000
Subject: [PATCH 4/7] ENH: axisRotationMotion: solidbody motion with roation
 axis specified (v.s. eulerangles for rotatingMotion)

---
 src/dynamicFvMesh/Make/files                  |   1 +
 .../axisRotationMotion/axisRotationMotion.C   | 113 +++++++++++++++++
 .../axisRotationMotion/axisRotationMotion.H   | 115 ++++++++++++++++++
 3 files changed, 229 insertions(+)
 create mode 100644 src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.C
 create mode 100644 src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.H

diff --git a/src/dynamicFvMesh/Make/files b/src/dynamicFvMesh/Make/files
index 31036fca6e..42105a9a60 100644
--- a/src/dynamicFvMesh/Make/files
+++ b/src/dynamicFvMesh/Make/files
@@ -14,6 +14,7 @@ $(solidBodyMotionFunctions)/SDA/SDA.C
 $(solidBodyMotionFunctions)/tabulated6DoFMotion/tabulated6DoFMotion.C
 $(solidBodyMotionFunctions)/linearMotion/linearMotion.C
 $(solidBodyMotionFunctions)/rotatingMotion/rotatingMotion.C
+$(solidBodyMotionFunctions)/axisRotationMotion/axisRotationMotion.C
 $(solidBodyMotionFunctions)/multiMotion/multiMotion.C
 $(solidBodyMotionFunctions)/oscillatingLinearMotion/oscillatingLinearMotion.C
 $(solidBodyMotionFunctions)/oscillatingRotatingMotion/oscillatingRotatingMotion.C
diff --git a/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.C b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.C
new file mode 100644
index 0000000000..456441026f
--- /dev/null
+++ b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.C
@@ -0,0 +1,113 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "axisRotationMotion.H"
+#include "addToRunTimeSelectionTable.H"
+#include "unitConversion.H"
+
+using namespace Foam::constant::mathematical;
+
+// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
+
+namespace Foam
+{
+namespace solidBodyMotionFunctions
+{
+    defineTypeNameAndDebug(axisRotationMotion, 0);
+    addToRunTimeSelectionTable
+    (
+        solidBodyMotionFunction,
+        axisRotationMotion,
+        dictionary
+    );
+}
+}
+
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+Foam::solidBodyMotionFunctions::axisRotationMotion::axisRotationMotion
+(
+    const dictionary& SBMFCoeffs,
+    const Time& runTime
+)
+:
+    solidBodyMotionFunction(SBMFCoeffs, runTime)
+{
+    read(SBMFCoeffs);
+}
+
+
+// * * * * * * * * * * * * * * * * Destructors * * * * * * * * * * * * * * * //
+
+Foam::solidBodyMotionFunctions::axisRotationMotion::~axisRotationMotion()
+{}
+
+
+// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
+
+Foam::septernion
+Foam::solidBodyMotionFunctions::axisRotationMotion::transformation() const
+{
+    scalar t = time_.value();
+
+    // Motion around a centre of gravity
+
+    // Rotation around centre of gravity (in radians)
+    vector omega
+    (
+        t*degToRad(radialVelocity_.x()),
+        t*degToRad(radialVelocity_.y()),
+        t*degToRad(radialVelocity_.z())
+    );
+
+    scalar magOmega = mag(omega);
+
+    scalar cosHalfTheta = cos(0.5*magOmega);
+
+    quaternion R(cosHalfTheta, omega/magOmega);
+    septernion TR(septernion(CofG_)*R*septernion(-CofG_));
+
+    Info<< "solidBodyMotionFunctions::axisRotationMotion::transformation(): "
+        << "Time = " << t << " transformation: " << TR << endl;
+
+    return TR;
+}
+
+
+bool Foam::solidBodyMotionFunctions::axisRotationMotion::read
+(
+    const dictionary& SBMFCoeffs
+)
+{
+    solidBodyMotionFunction::read(SBMFCoeffs);
+
+    SBMFCoeffs_.lookup("CofG") >> CofG_;
+    SBMFCoeffs_.lookup("radialVelocity") >> radialVelocity_;
+
+    return true;
+}
+
+// ************************************************************************* //
diff --git a/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.H b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.H
new file mode 100644
index 0000000000..d372d82480
--- /dev/null
+++ b/src/dynamicFvMesh/solidBodyMotionFvMesh/solidBodyMotionFunctions/axisRotationMotion/axisRotationMotion.H
@@ -0,0 +1,115 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::solidBodyMotionFunctions::axisRotationMotion
+
+Description
+    Constant velocity rotation around CoG. Similar to rotatingMotion but
+    motion specified as rotation vector.
+
+SourceFiles
+    axisRotationMotion.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef axisRotationMotion_H
+#define axisRotationMotion_H
+
+#include "solidBodyMotionFunction.H"
+#include "primitiveFields.H"
+#include "point.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+namespace solidBodyMotionFunctions
+{
+
+/*---------------------------------------------------------------------------*\
+                          Class axisRotationMotion Declaration
+\*---------------------------------------------------------------------------*/
+
+class axisRotationMotion
+:
+    public solidBodyMotionFunction
+{
+    // Private data
+
+        //- Centre of gravity
+        point CofG_;
+
+        //- Rotational velocity (deg/s)
+        vector radialVelocity_;
+
+
+    // Private Member Functions
+
+        //- Disallow copy construct
+        axisRotationMotion(const axisRotationMotion&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const axisRotationMotion&);
+
+
+public:
+
+    //- Runtime type information
+    TypeName("axisRotationMotion");
+
+
+    // Constructors
+
+        //- Construct from components
+        axisRotationMotion
+        (
+            const dictionary& SBMFCoeffs,
+            const Time& runTime
+        );
+
+
+    //- Destructor
+    virtual ~axisRotationMotion();
+
+
+    // Member Functions
+
+        //- Return the solid-body motion transformation septernion
+        virtual septernion transformation() const;
+
+        //- Update properties from given dictionary
+        virtual bool read(const dictionary& SBMFCoeffs);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace solidBodyMotionFunctions
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

From 97b7aa0d727200a3cc52801e967740af2be36586 Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Wed, 7 Mar 2012 11:49:07 +0000
Subject: [PATCH 5/7] BUG: vtkUnstructuredReader: support for lines and
 vtkIdType

---
 src/fileFormats/vtk/vtkUnstructuredReader.C | 10 ++++++----
 src/fileFormats/vtk/vtkUnstructuredReader.H | 16 +++++++++++++---
 2 files changed, 19 insertions(+), 7 deletions(-)

diff --git a/src/fileFormats/vtk/vtkUnstructuredReader.C b/src/fileFormats/vtk/vtkUnstructuredReader.C
index 2fbe435242..26ecf9a0ad 100644
--- a/src/fileFormats/vtk/vtkUnstructuredReader.C
+++ b/src/fileFormats/vtk/vtkUnstructuredReader.C
@@ -36,13 +36,14 @@ defineTypeNameAndDebug(Foam::vtkUnstructuredReader, 0);
 
 template<>
 const char*
-Foam::NamedEnum<Foam::vtkUnstructuredReader::vtkDataType, 3>::names[] =
+Foam::NamedEnum<Foam::vtkUnstructuredReader::vtkDataType, 4>::names[] =
 {
     "int",
     "float",
-    "string"
+    "string",
+    "vtkIdType"
 };
-const Foam::NamedEnum<Foam::vtkUnstructuredReader::vtkDataType, 3>
+const Foam::NamedEnum<Foam::vtkUnstructuredReader::vtkDataType, 4>
 Foam::vtkUnstructuredReader::vtkDataTypeNames;
 
 
@@ -384,6 +385,7 @@ void Foam::vtkUnstructuredReader::readField
     switch (vtkDataTypeNames[dataType])
     {
         case VTK_INT:
+        case VTK_ID:
         {
             autoPtr<labelIOField> fieldVals
             (
@@ -724,7 +726,7 @@ void Foam::vtkUnstructuredReader::read(ISstream& inFile)
         else if (tag == "CELL_DATA")
         {
             readMode = CELL_DATA;
-            wantedSize = cells_.size()+faces_.size();
+            wantedSize = cells_.size()+faces_.size()+lines_.size();
 
             label nCells(readLabel(inFile));
             if (nCells != wantedSize)
diff --git a/src/fileFormats/vtk/vtkUnstructuredReader.H b/src/fileFormats/vtk/vtkUnstructuredReader.H
index d33fb01d01..201012eaec 100644
--- a/src/fileFormats/vtk/vtkUnstructuredReader.H
+++ b/src/fileFormats/vtk/vtkUnstructuredReader.H
@@ -25,9 +25,18 @@ Class
     Foam::vtkUnstructuredReader
 
 Description
-    Reader for vtk unstructured legacy files. Supports single CELLS, POINTS
+    Reader for vtk unstructured_grid legacy files. Supports single CELLS, POINTS
     etc. entry only.
 
+    - POINTS becomes OpenFOAM points
+    - CELLS gets split into OpenFOAM
+        - cells
+        - faces
+        - lines
+    - CELL_DATA or POINT_DATA gets stored on the corresponding objectRegistry
+      in original vtk numbering order so use e.g. faceMap() to go from entry
+      in faces() back to vtk numbering.
+
 SourceFiles
     vtkUnstructuredReader.C
 
@@ -61,10 +70,11 @@ public:
         {
             VTK_INT,
             VTK_FLOAT,
-            VTK_STRING
+            VTK_STRING,
+            VTK_ID
         };
 
-        static const NamedEnum<vtkDataType, 3> vtkDataTypeNames;
+        static const NamedEnum<vtkDataType, 4> vtkDataTypeNames;
 
 
         //- Enumeration defining the vtk dataset types

From f3d64c24090b484bb52233e92fbbde9e598ad69b Mon Sep 17 00:00:00 2001
From: sergio <sergio>
Date: Wed, 7 Mar 2012 12:06:00 +0000
Subject: [PATCH 6/7] ENH: Adding noCombustion model

---
 src/combustionModels/Make/files               |   2 +
 .../noCombustion/noCombustion.C               | 142 ++++++++++++++++++
 .../noCombustion/noCombustion.H               | 118 +++++++++++++++
 .../noCombustion/noCombustions.C              |  53 +++++++
 .../constant/combustionProperties             |   1 +
 5 files changed, 316 insertions(+)
 create mode 100644 src/combustionModels/noCombustion/noCombustion.C
 create mode 100644 src/combustionModels/noCombustion/noCombustion.H
 create mode 100644 src/combustionModels/noCombustion/noCombustions.C

diff --git a/src/combustionModels/Make/files b/src/combustionModels/Make/files
index 3bb286c7d6..325fa1dde1 100644
--- a/src/combustionModels/Make/files
+++ b/src/combustionModels/Make/files
@@ -23,5 +23,7 @@ FSD/reactionRateFlameAreaModels/relaxation/relaxation.C
 
 FSD/FSDs.C
 
+noCombustion/noCombustions.C
+
 LIB = $(FOAM_LIBBIN)/libcombustionModels
 
diff --git a/src/combustionModels/noCombustion/noCombustion.C b/src/combustionModels/noCombustion/noCombustion.C
new file mode 100644
index 0000000000..3abdedaf29
--- /dev/null
+++ b/src/combustionModels/noCombustion/noCombustion.C
@@ -0,0 +1,142 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "noCombustion.H"
+#include "fvmSup.H"
+
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+template<class CombThermoType>
+Foam::combustionModels::noCombustion<CombThermoType>::noCombustion
+(
+    const word& modelType,
+    const fvMesh& mesh
+)
+:
+    CombThermoType(modelType, mesh)
+{}
+
+
+// * * * * * * * * * * * * * * * * Destructors * * * * * * * * * * * * * * * //
+
+template<class CombThermoType>
+Foam::combustionModels::noCombustion<CombThermoType>::~noCombustion()
+{}
+
+
+// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
+
+template<class CombThermoType>
+void Foam::combustionModels::noCombustion<CombThermoType>::correct()
+{
+//  Do Nothing
+}
+
+
+template<class CombThermoType>
+Foam::tmp<Foam::fvScalarMatrix>
+Foam::combustionModels::noCombustion<CombThermoType>::R
+(
+    const volScalarField& Y
+) const
+{
+    tmp<fvScalarMatrix> tSu
+    (
+        new fvScalarMatrix(Y, dimMass/dimTime)
+    );
+
+    return tSu;
+}
+
+
+template<class CombThermoType>
+Foam::tmp<Foam::volScalarField>
+Foam::combustionModels::noCombustion<CombThermoType>::dQ() const
+{
+    tmp<volScalarField> tdQ
+    (
+        new volScalarField
+        (
+            IOobject
+            (
+                "dQ",
+                this->mesh().time().timeName(),
+                this->mesh(),
+                IOobject::NO_READ,
+                IOobject::NO_WRITE,
+                false
+            ),
+            this->mesh(),
+            dimensionedScalar("dQ", dimEnergy/dimTime, 0.0),
+            zeroGradientFvPatchScalarField::typeName
+        )
+    );
+
+    return tdQ;
+}
+
+
+template<class CombThermoType>
+Foam::tmp<Foam::volScalarField>
+Foam::combustionModels::noCombustion<CombThermoType>::Sh() const
+{
+    tmp<volScalarField> tSh
+    (
+        new volScalarField
+        (
+            IOobject
+            (
+                "Sh",
+                this->mesh().time().timeName(),
+                this->mesh(),
+                IOobject::NO_READ,
+                IOobject::NO_WRITE,
+                false
+            ),
+            this->mesh(),
+            dimensionedScalar("zero", dimEnergy/dimTime/dimVolume, 0.0),
+            zeroGradientFvPatchScalarField::typeName
+        )
+    );
+
+    return tSh;
+}
+
+
+template<class CombThermoType>
+bool Foam::combustionModels::noCombustion<CombThermoType>::read()
+{
+    if (CombThermoType::read())
+    {
+        return true;
+    }
+    else
+    {
+        return false;
+    }
+}
+
+
+// ************************************************************************* //
diff --git a/src/combustionModels/noCombustion/noCombustion.H b/src/combustionModels/noCombustion/noCombustion.H
new file mode 100644
index 0000000000..8e845d43f1
--- /dev/null
+++ b/src/combustionModels/noCombustion/noCombustion.H
@@ -0,0 +1,118 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::combustionModels::noCombustion
+
+Description
+
+SourceFiles
+    noCombustion.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef noCombustion_H
+#define noCombustion_H
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+namespace combustionModels
+{
+
+/*---------------------------------------------------------------------------*\
+                            Class noCombustion Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class CombThermoType>
+class noCombustion
+:
+    public CombThermoType
+{
+
+    //- Disallow copy construct
+    noCombustion(const noCombustion&);
+
+    //- Disallow default bitwise assignment
+    void operator=(const noCombustion&);
+
+
+public:
+
+    //- Runtime type information
+    TypeName("noCombustion");
+
+
+    // Constructors
+
+        //- Construct from components
+        noCombustion
+        (
+            const word& modelType,
+            const fvMesh& mesh
+        );
+
+
+    //- Destructor
+    virtual ~noCombustion();
+
+
+    // Member Functions
+
+        // Evolution
+
+            //- Correct combustion rate
+            virtual void correct();
+
+            //- Fuel consumption rate matrix.
+            virtual tmp<fvScalarMatrix> R(const volScalarField& Y) const;
+
+            //- Heat release rate calculated from fuel consumption rate matrix
+            virtual tmp<volScalarField> dQ() const;
+
+            //-  Return source for enthalpy equation [kg/m/s3]
+            virtual tmp<volScalarField> Sh() const;
+
+    // I-O
+
+            //- Update properties from given dictionary
+            virtual bool read();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace combustionModels
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "noCombustion.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //
diff --git a/src/combustionModels/noCombustion/noCombustions.C b/src/combustionModels/noCombustion/noCombustions.C
new file mode 100644
index 0000000000..dba5597f1e
--- /dev/null
+++ b/src/combustionModels/noCombustion/noCombustions.C
@@ -0,0 +1,53 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "makeCombustionTypes.H"
+
+#include "psiCombustionModel.H"
+#include "rhoCombustionModel.H"
+#include "noCombustion.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+namespace combustionModels
+{
+    makeCombustionTypes
+    (
+        noCombustion,
+        psiCombustionModel
+    );
+
+    makeCombustionTypes
+    (
+        noCombustion,
+        rhoCombustionModel
+    );
+}
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
diff --git a/tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/combustionProperties b/tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/combustionProperties
index 619c448058..ae740ee671 100644
--- a/tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/combustionProperties
+++ b/tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/combustionProperties
@@ -15,6 +15,7 @@ FoamFile
 }
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+//combustionModel  noCombustion<psiCombustionModel>;
 combustionModel  infinitelyFastChemistry<psiCombustionModel,gasThermoPhysics>;
 //combustionModel  FSD<psiCombustionModel,gasThermoPhysics>;
 

From 8695d09a92d2a2725e94e65046c2611a961a0e43 Mon Sep 17 00:00:00 2001
From: mattijs <mattijs>
Date: Wed, 7 Mar 2012 14:53:09 +0000
Subject: [PATCH 7/7] BUG: renumberMesh: not flipping faces

---
 .../utilities/mesh/manipulation/renumberMesh/renumberMesh.C   | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C b/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
index 1dfb6ae3ca..8910645b5c 100644
--- a/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
+++ b/applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
@@ -432,6 +432,7 @@ autoPtr<mapPolyMesh> reorderMesh
     );
 
     // Check if any faces need swapping.
+    labelHashSet flipFaceFlux(newOwner.size());
     forAll(newNeighbour, faceI)
     {
         label own = newOwner[faceI];
@@ -441,6 +442,7 @@ autoPtr<mapPolyMesh> reorderMesh
         {
             newFaces[faceI].flip();
             Swap(newOwner[faceI], newNeighbour[faceI]);
+            flipFaceFlux.insert(faceI);
         }
     }
 
@@ -491,7 +493,7 @@ autoPtr<mapPolyMesh> reorderMesh
             identity(mesh.nPoints()),   // reversePointMap,
             reverseFaceOrder,           // reverseFaceMap,
             reverseCellOrder,           // reverseCellMap,
-            labelHashSet(0),            // flipFaceFlux,
+            flipFaceFlux,               // flipFaceFlux,
             patchPointMap,              // patchPointMap,
             labelListList(0),           // pointZoneMap,
             labelListList(0),           // faceZonePointMap,