ENH: support UOPstream and UIPstream as formatters with an external buffer

- can split serialise/de-serialise and send/recv actions
This commit is contained in:
Mark Olesen 2023-02-08 17:13:44 +01:00
parent 70d310329c
commit add61ca273
11 changed files with 378 additions and 44 deletions

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@ -0,0 +1,3 @@
Test-parallel-nbx2.C
EXE = $(FOAM_USER_APPBIN)/Test-parallel-nbx2

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@ -0,0 +1,2 @@
/* EXE_INC = */
/* EXE_LIBS = */

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@ -0,0 +1,227 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | www.openfoam.com
\\/ M anipulation |
-------------------------------------------------------------------------------
Copyright (C) 2023 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
Application
Test-parallel-nbx2
Description
Test for send/receive data
\*---------------------------------------------------------------------------*/
#include "List.H"
#include "argList.H"
#include "Time.H"
#include "IPstream.H"
#include "OPstream.H"
#include "IOstreams.H"
#include "Random.H"
using namespace Foam;
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
argList::noCheckProcessorDirectories();
argList::addBoolOption("non-blocking", "Test with non-blocking receives");
#include "setRootCase.H"
const bool optNonBlocking = args.found("non-blocking");
if (!Pstream::parRun())
{
Info<< "\nWarning: not parallel - skipping further tests\n" << endl;
return 0;
}
Info<< "\nTesting with non-blocking receives: " << optNonBlocking << nl;
const int tag = (UPstream::msgType() + 314159);
const label comm = UPstream::worldComm;
Random rnd(20*UPstream::myProcNo());
// Looks a bit like a DIY PstreamBuffers...
Map<DynamicList<char>> sendBufs;
Map<DynamicList<char>> recvBufs;
DynamicList<UPstream::Request> sendRequests(10);
DynamicList<UPstream::Request> recvRequests(10);
if (!Pstream::master())
{
// Send some random length to master
const int toProci = UPstream::masterNo();
label len = rnd.position<label>(10, 20);
if (UPstream::myProcNo() && (UPstream::myProcNo() % 3) == 0) len = 0;
scalarField fld(len, scalar(UPstream::myProcNo()));
// Format for sending
if (!fld.empty())
{
auto& buf = sendBufs(toProci);
UOPstream os(buf);
os << fld;
}
// Start nonblocking synchronous send to process dest
if (sendBufs.found(toProci) && !sendBufs[toProci].empty())
{
Pout<< "send: [" << sendBufs[toProci].size() << " bytes] "
<< flatOutput(fld) << endl;
// Has data to send
UOPstream::write
(
sendRequests.emplace_back(),
UPstream::masterNo(),
sendBufs[toProci],
tag,
comm,
UPstream::sendModes::sync
);
}
}
// Probe and receive
UPstream::Request barrierReq;
for (bool barrier_active = false, done = false; !done; /*nil*/)
{
std::pair<int, int> probed =
UPstream::probeMessage
(
UPstream::commsTypes::nonBlocking,
-1, // ANY_SOURCE
tag,
comm
);
if (probed.second > 0)
{
// Message found and had size: receive it
const label proci = probed.first;
const label count = probed.second;
if (optNonBlocking)
{
recvBufs(proci).resize_nocopy(count);
// Non-blocking read
UIPstream::read
(
recvRequests.emplace_back(),
proci,
recvBufs[proci],
tag,
comm
);
// Pout<< "Done: "
// << UPstream::finishedRequests(recvRequests) << endl;
}
else
{
IPstream is
(
UPstream::commsTypes::scheduled,
probed.first,
probed.second,
tag,
comm
);
scalarField fld(is);
Info<< "from [" << probed.first
<< "] : " << flatOutput(fld) << endl;
}
}
if (barrier_active)
{
// Test barrier for completion
if (UPstream::finishedRequest(barrierReq))
{
done = true;
}
}
else
{
// Check if all sends have arrived
if (UPstream::finishedRequests(sendRequests))
{
UPstream::barrier(comm, &barrierReq);
barrier_active = true;
}
}
}
Pout<< "pending receives: " << recvRequests.size() << endl;
// Wait for receives to complete
UPstream::waitRequests(recvRequests);
// It could be we need this type of synchronization point
// if the receives are non-blocking
if (optNonBlocking)
{
UPstream::barrier(comm);
}
if (!recvBufs.empty())
{
Pout<< "Receives from: " << flatOutput(recvBufs.sortedToc()) << endl;
forAllConstIters(recvBufs, iter)
{
Pout<< "proc:" << iter.key() << " len:" << iter.val().size() << nl;
if (!iter.val().empty())
{
UIPstream is(iter.val());
scalarField fld(is);
Pout<< "recv:" << iter.key()
<< " : " << flatOutput(fld) << nl;
}
}
}
Info<< "\nEnd\n" << endl;
return 0;
}
// ************************************************************************* //

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@ -5,7 +5,7 @@
\\ / A nd | www.openfoam.com
\\/ M anipulation |
-------------------------------------------------------------------------------
Copyright (C) 2022 OpenCFD Ltd.
Copyright (C) 2022-2023 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -75,13 +75,12 @@ Foam::IPBstream::IPBstream
commsType,
fromProcNo,
Pstream::transferBuf_,
transferBufPosition_,
UIPstreamBase::storedRecvBufPos_, // Internal only
tag,
comm,
false, // Do not clear Pstream::transferBuf_ if at end
fmt
),
transferBufPosition_(0)
)
{}

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@ -56,11 +56,6 @@ class IPstream
public Pstream,
public UIPstream
{
// Private Data
//- Receive index into Pstream::transferBuf_
label transferBufPosition_;
public:
// Constructors
@ -90,11 +85,6 @@ class IPBstream
public Pstream,
public UIPBstream
{
// Private Data
//- Receive index into Pstream::transferBuf_
label transferBufPosition_;
public:
// Constructors

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@ -5,7 +5,7 @@
\\ / A nd | www.openfoam.com
\\/ M anipulation |
-------------------------------------------------------------------------------
Copyright (C) 2022 OpenCFD Ltd.
Copyright (C) 2022-2023 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -91,6 +91,16 @@ Foam::UIPstream::UIPstream(const int fromProcNo, PstreamBuffers& buffers)
}
Foam::UIPstream::UIPstream
(
const DynamicList<char>& recvBuf,
IOstreamOption::streamFormat fmt
)
:
UIPstreamBase(recvBuf, fmt)
{}
Foam::IPstream::IPstream
(
const UPstream::commsTypes commsType,
@ -107,13 +117,12 @@ Foam::IPstream::IPstream
commsType,
fromProcNo,
Pstream::transferBuf_,
transferBufPosition_,
UIPstreamBase::storedRecvBufPos_, // Internal only
tag,
comm,
false, // Do not clear Pstream::transferBuf_ if at end
fmt
),
transferBufPosition_(0)
)
{}

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@ -52,6 +52,16 @@ Foam::UOPstream::UOPstream(const int toProcNo, PstreamBuffers& buffers)
{}
Foam::UOPstream::UOPstream
(
DynamicList<char>& sendBuf,
IOstreamOption::streamFormat fmt
)
:
UOPstreamBase(sendBuf, fmt)
{}
Foam::OPstream::OPstream
(
const UPstream::commsTypes commsType,

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@ -85,19 +85,30 @@ protected:
// Protected Data
int fromProcNo_;
DynamicList<char>& recvBuf_;
label& recvBufPos_;
//- Source rank for the data
const int fromProcNo_;
//- Message tag for communication
const int tag_;
const label comm_;
//- The communicator index
const int comm_;
//- The message size, read on bufferIPCrecv or set directly
int messageSize_;
//- Receive position in buffer data, if ony
//- If there is no external location for recvBufPos_
label storedRecvBufPos_;
//- Clear the receive buffer on termination (in the destructor)
const bool clearAtEnd_;
int messageSize_;
//- Reference to the receive buffer data
DynamicList<char>& recvBuf_;
//- Reference to the receive position in buffer data
label& recvBufPos_;
// Protected Constructors
@ -120,10 +131,17 @@ protected:
//- Construct given buffers
UIPstreamBase(const int fromProcNo, PstreamBuffers& buffers);
//- Construct for an externally obtained buffer.
// The parameter is allowed to be const (since reading will not
// affect it), but must reference a concrete variable.
UIPstreamBase
(
const DynamicList<char>& receiveBuf,
IOstreamOption::streamFormat fmt
);
public:
//- Destructor. Optionally clears external receive buffer.
virtual ~UIPstreamBase();
@ -238,6 +256,16 @@ public:
//- Construct given buffers
UIPstream(const int fromProcNo, PstreamBuffers& buffers);
//- Construct for reading from a standalone buffer that has
//- been obtained externally by the caller.
// The parameter is allowed to be const (since reading will not
// affect it), but must reference a concrete variable.
explicit UIPstream
(
const DynamicList<char>& recvBuf,
IOstreamOption::streamFormat fmt = IOstreamOption::BINARY
);
//- Destructor
virtual ~UIPstream() = default;

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@ -159,12 +159,13 @@ Foam::UIPstreamBase::UIPstreamBase
UPstream(commsType),
Istream(fmt),
fromProcNo_(fromProcNo),
recvBuf_(receiveBuf),
recvBufPos_(receiveBufPosition),
tag_(tag),
comm_(comm),
messageSize_(0),
storedRecvBufPos_(0),
clearAtEnd_(clearAtEnd),
messageSize_(0)
recvBuf_(receiveBuf),
recvBufPos_(receiveBufPosition)
{
setOpened();
setGood();
@ -180,12 +181,13 @@ Foam::UIPstreamBase::UIPstreamBase
UPstream(buffers.commsType()),
Istream(buffers.format()),
fromProcNo_(fromProcNo),
recvBuf_(buffers.accessRecvBuffer(fromProcNo)),
recvBufPos_(buffers.accessRecvPosition(fromProcNo)),
tag_(buffers.tag()),
comm_(buffers.comm()),
messageSize_(0),
storedRecvBufPos_(0),
clearAtEnd_(buffers.allowClearRecv()),
messageSize_(0)
recvBuf_(buffers.accessRecvBuffer(fromProcNo)),
recvBufPos_(buffers.accessRecvPosition(fromProcNo))
{
if
(
@ -205,6 +207,32 @@ Foam::UIPstreamBase::UIPstreamBase
}
Foam::UIPstreamBase::UIPstreamBase
(
const DynamicList<char>& receiveBuf,
IOstreamOption::streamFormat fmt
)
:
UPstream(UPstream::commsTypes::nonBlocking), // placeholder
Istream(fmt),
fromProcNo_(UPstream::masterNo()), // placeholder
tag_(UPstream::msgType()), // placeholder
comm_(UPstream::selfComm), // placeholder
messageSize_(receiveBuf.size()), // Message == buffer
storedRecvBufPos_(0),
clearAtEnd_(false), // Do not clear recvBuf if at end!!
recvBuf_
(
// The receive buffer is never modified with this code path
const_cast<DynamicList<char>&>(receiveBuf)
),
recvBufPos_(storedRecvBufPos_) // Internal reference
{
setOpened();
setGood();
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::UIPstreamBase::~UIPstreamBase()
@ -517,8 +545,7 @@ void Foam::UIPstreamBase::print(Ostream& os) const
{
os << "Reading from processor " << fromProcNo_
<< " using communicator " << comm_
<< " and tag " << tag_
<< Foam::endl;
<< " and tag " << tag_ << Foam::endl;
}

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@ -92,16 +92,21 @@ protected:
// Protected Data
int toProcNo_;
DynamicList<char>& sendBuf_;
//- Destination rank for the data
const int toProcNo_;
//- Message tag for communication
const int tag_;
const label comm_;
//- The communicator index
const int comm_;
//- Call bufferIPCsend on termination (in the destructor)
const bool sendAtDestruct_;
//- Reference to the send buffer data
DynamicList<char>& sendBuf_;
// Protected Constructors
@ -122,6 +127,12 @@ protected:
//- Construct given buffers
UOPstreamBase(const int toProcNo, PstreamBuffers& buffers);
//- Construct for externally obtained buffers
UOPstreamBase
(
DynamicList<char>& sendBuf,
IOstreamOption::streamFormat fmt
);
public:
@ -310,6 +321,14 @@ public:
//- Construct given buffers
UOPstream(const int toProcNo, PstreamBuffers& buffers);
//- Construct for writing into a standalone buffer.
//- Data transfer is handled externally by the caller.
explicit UOPstream
(
DynamicList<char>& sendBuf,
IOstreamOption::streamFormat fmt = IOstreamOption::BINARY
);
//- Destructor, usually sends buffer on destruct.
virtual ~UOPstream();

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@ -145,10 +145,10 @@ Foam::UOPstreamBase::UOPstreamBase
UPstream(commsType),
Ostream(fmt),
toProcNo_(toProcNo),
sendBuf_(sendBuf),
tag_(tag),
comm_(comm),
sendAtDestruct_(sendAtDestruct)
sendAtDestruct_(sendAtDestruct),
sendBuf_(sendBuf)
{
setOpened();
setGood();
@ -160,16 +160,36 @@ Foam::UOPstreamBase::UOPstreamBase(const int toProcNo, PstreamBuffers& buffers)
UPstream(buffers.commsType()),
Ostream(buffers.format()),
toProcNo_(toProcNo),
sendBuf_(buffers.accessSendBuffer(toProcNo)),
tag_(buffers.tag()),
comm_(buffers.comm()),
sendAtDestruct_(buffers.commsType() != UPstream::commsTypes::nonBlocking)
sendAtDestruct_(buffers.commsType() != UPstream::commsTypes::nonBlocking),
sendBuf_(buffers.accessSendBuffer(toProcNo))
{
setOpened();
setGood();
}
Foam::UOPstreamBase::UOPstreamBase
(
DynamicList<char>& sendBuf,
IOstreamOption::streamFormat fmt
)
:
UPstream(UPstream::commsTypes::nonBlocking), // placeholder
Ostream(fmt),
toProcNo_(UPstream::masterNo()), // placeholder
tag_(UPstream::msgType()), // placeholder
comm_(UPstream::selfComm), // placeholder
sendAtDestruct_(false), // Never sendAtDestruct!!
sendBuf_(sendBuf)
{
sendBuf_.clear(); // Overwrite into buffer
setOpened();
setGood();
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::UOPstreamBase::~UOPstreamBase()
@ -394,8 +414,8 @@ void Foam::UOPstreamBase::rewind()
void Foam::UOPstreamBase::print(Ostream& os) const
{
os << "Writing from processor " << toProcNo_
<< " to processor " << myProcNo() << " in communicator " << comm_
os << "Writing to processor " << toProcNo_
<< " from processor " << myProcNo() << " in communicator " << comm_
<< " and tag " << tag_ << Foam::endl;
}