- The internal storage location of finite-area changes from being
piggybacked on the polyMesh registry to a having its own dedicated
registry:
* allows a clearer separation of field types without name clashes.
* prerequisite for supporting multiple finite-area regions (future)
Old Locations:
```
0/Us
constant/faMesh
system/faMeshDefinition
system/faSchemes
system/faSolution
```
New Locations:
```
0/finite-area/Us
constant/finite-area/faMesh
system/finite-area/faMeshDefinition (or system/faMeshDefinition)
system/finite-area/faSchemes
system/finite-area/faSolution
```
NOTES:
The new locations represent a hard change (breaking change) that
is normally to be avoided, but seamless compatibility handling
within the code was found to be unworkable.
The `foamUpgradeFiniteArea` script provides assistance with migration.
As a convenience, the system/faMeshDefinition location continues
to be supported (may be deprecated in the future).
- used defunct "processors/" directory naming, and includes are now
addressed by the file-handler anyhow.
ENH: support 'tutorials/Alltest -init'
- for copying/creating test directory without running
- renumberMesh now has -dry-run, -write-maps, -no-fields,
-renumber-method, -renumber-coeffs options.
* Use -dry-run with -write-maps to visualize the before/after
effects of renumbering (creates a VTK file).
* -no-fields to renumber the mesh only.
This is useful and faster when the input fields are uniform
and the -overwrite option is specified.
* -renumber-method allows a quick means of specifying a different
default renumber method (instead of Cuthill-McKee).
The -renumber-coeffs option allows passing of dictionary content
for the method.
Examples,
// Different ways to specify reverse Cuthill-McKee
* -renumber-method RCM
* -renumber-coeffs 'reverse true;'
* -renumber-method CuthillMcKee
* -renumber-coeffs 'reverse true;'
* -renumber-coeffs 'method CuthillMcKee; reverse true;'
// Other (without dictionary coefficients)
* renumberMesh -renumber-method random
// Other (with dictionary coefficients)
renumberMesh \
-renumber-method spring \
-renumber-coeffs 'maxCo 0.1; maxIter 1000; freezeFraction 0.99;'
// Other (with additional libraries)
renumberMesh -renumber-method zoltan -lib zoltanRenumber
COMP: build zoltan renumbering to MPI-specific location
- zoltan and Sloan renumbering are now longer automatically linked to
the renumberMesh utility but must be separately loaded by a
command-line option or through a dictionary "libs" entry.
ENH: add output cellID for decomposePar -dry-run -cellDist
- enhance POSIX compliance
- apply distinct colours and dash type for each line
- standardize the frame size to 1200x627
- dynamically replace the title with <function-object-name>/<file-name>
- address underscore character issues
- introduce legend components for tensors
- resolve a bug caused by parentheses in tensor files
BUG: particleTrackProperties: correct the typo (fixes#3050)
- for clang-based compilers the default linker may be lld or simply ld.
Support '+link-ld' to explicitly select use of the ld linker.
- consolidate linker rules into single files
STYLE: adjust SPDX Identifier
- the special MacOS dlopen handling (commit f584ec97d0)
did not fully solve the problem with SIP clearing.
Eg, sourcing the RunFunctions (for runParallel) triggers SIP and
clears DYLD_LIBRARY_PATH. With the cleared path it finds the dummy
libraries: the dummy Pstream::init() fails.
- The Apple SIP (System Integrity Protection) clears environment
variables, which affects the behaviour of dynamic library loading
(the DYLD_LIBRARY_PATH env variable).
OpenFOAM shadows this variable as FOAM_LD_LIBRARY_PATH, which has
been used to restore DYLD_LIBRARY_PATH (eg, in RunFunctions script).
However, this solution is not quite complete, as it
(a) requires sourcing of RunFunctions file,
(b) additional errors appear depending on a user workflow.
This changeset alleviates the problem by also iterating through
paths stored in the shadow variable when loading dynamic libraries
(if the DYLD_LIBRARY_PATH is empty).
- directory discovery originally designed for a sub-dir location
(eg, etc/openfoam) but failed if called from within the sub-dir
itself.
Now simply assume it is located in the project directory or the etc/
sub-dir, so that it can also be relocated into the project directory
in the future (pending changes to RPM and debian packaging)
- interpret as '-decomposeParDict xyz' for simpler scripting:
A empty value ("") as well as "none" or "false" values are ignored.
Eg,
unset decompDict
if some_condition; then decompDict=decomposeParDict-12; fi
runParallel -decompose-dict=$decompDict ...
ENH: more generous when scanning decomposeParDict for numberOfSubdomains
- assume file is in system/ directory if not otherwise found
- for repeated tests (eg, during bisection) can be used to preserve
the existing directory as tutorialsTest.bak01,
tutorialsTest.bak02, ... (max of 10).
- preserve the commit information as tutorialsTest/commit-info
to help document the current or backup test results.
- introduce a FOAM_LD_LIBRARY_PATH variable to shadow
DYLD_LIBRARY_PATH on MacOS.
The DYLD_LIBRARY_PATH and LD_LIBRARY_PATH cannot be modified via sub
shells etc when SIP is active. This helps circumvent these
restrictions, which is obviously a hack, but seems to be required.
COMP: disable -ftrapping-math in geompack for MacOS
- include constant/faMesh cleanup (cleanFaMesh) as part of standard
cleanCase
- simplify cleanPolyMesh function to now just warn about old
constant/polyMesh/blockMeshDict but not try to remove anything
- cleanup cellDist.vtu (decomposePar -dry-run) as well
ENH: foamRunTutorials - fallback to Allrun-parallel, Allrun-serial
TUT: call m4 with file argument instead of redirected stdin
TUT: adjust suffixes on decomposeParDict variants
- partial revert for 13740de427 (#2158)
MS-MPI does not currently have a MPI_Comm_create_group(),
so keep using MPI_Comm_create() there.
Only affects multi-world simulations.
CONFIG: retain dummy version of libPstream.dll
- retain as libPstream.dll-dummy so that it is available for
manual replacement of the regular libPstream.dll (#2290)
Keep extra copy of libPstream.dll as libPstream.dll-msmpi
(for example) for manual replacement.
- fix overly aggressive match in the API value
- allow `INTELMPI*` generic value, this can be used to specify something
like INTELMPI_custom and populate the corresponding wmake rule
manually
STYLE: mention FOAM_BUILDROOT in wmake -help-full output
STYLE: adjust openfoam shell session welcome information
- adjust internal variable names to reduce collision potential
- improve handling of openfoam -etc=...
- more closely reflect what the binaries report
- report the installation path
- change PS1 case/separator to roughly correspond to package names
STYLE: adjust README to mention upcoming v2112
- was taking from the current head instead from specified commit-ish
ENH: add -debian=NUM convenience option to foamPackRelease
STYLE: relocate compile begin/end messages
COMP: suppress more clang warnings (needed for boost)
- it is now possible to include the selected mpi version in the
top-level bashrc or prefs.sh file. For example,
WM_MPLIB=OPENMPI-4.1.1 or WM_MPLIB=openmpi-4.1.1
after evaluation of the config.sh/mpi, this will define
WM_MPLIB=OPENMPI-4.1.1 and FOAM_MPI=openmpi-4.1.1
During the wmake, the mpi-rules will first load the MPI 'family'
rules (OPENMPI in this example) before trying to load
version-specific rules if they exist.
NOTE: the regular user-defined prefs system is unaffected by this
change. This means it is still possible to use a file such as
'prefs.openmpi' to define the preferred version instead or as well.
However, it does mean inconsistent naming can be specified.
For example, specify WM_MPLIB=OPENMPI-4.1.1 at the top-level but
actually have FOAM_MPI=openmpi-4.0.6 in the prefs.openmpi file.
This will make the value of WM_MPLIB misleading.
CONFIG: foamConfigurePaths support for sys-openmpi major version
CONFIG: cleanup any shadow env variables
- migrate to c++14 for most compilers *except* gcc.
There are still many systems in use with gcc-4.8.5, which does not
support c++14.
- initial rules for nvidia compilers (pgi is will soon be defunct).
Not fully tested...
CONFIG: provide fallback value for the user directory name
- in containers may have an unset USER env variable.
Default to 'user' to prevent ugly looking directory names.
- previously a function (unlike the csh version) but since bashrc and
setup have been split -> replace with inline definition
STYLE: formatting/wording for openfoam starters
TUT: simplify controlDict modification, add default substitution
ENH: accept '/' for end-of-options terminator (etc/openfoam)
- makes the application or service more apparent.
* eg. /usr/bin/openfoam / blockMesh
* vs. /usr/bin/openfoam -- blockMesh
Accept lone '-' as the end-of-options terminator, as per bash
- Adjust handling of openfoam '-c' option to flag that a command-string
will appear, but continue with option parsing.
Consistent with bash definition.
- in the 'auto' mode (now the default), it will use cleanCase and also
remove the 0/ directory if a 0.orig/ directory also exists.
This corresponds to a frequent idiom and can be used quite safely
for most cases.
ENH: add -serial / -parallel preference for foamRunTutorials
