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443 Commits

Author SHA1 Message Date
Prashant
528881cf47 BUG: missing surfaceCheck -outputThreshold option (fixes #347) 
- The value from -outputThreshold was used in the code,
  but the option definition itself was somehow missed.
 2016-12-16 05:14:46 +00:00
Mark Olesen
6f2b2aff40 STYLE: reduce script verbosity 2016-12-13 08:15:00 +01:00
Mark Olesen
c3005794ab ENH: provide triSurfaceTools::validTri() method to reduce code duplication 
- identical code was present in surfaceCheck (original source),
  and isoSurface, isoSurfaceCell (copies).

- add in a MeshedSurface<face> variant as well, since this will likely
  be needed in the near future
 2016-11-24 15:31:32 +01:00
Mark Olesen
907bde821d STYLE: fixup usage for -clean/-noClean options 2016-11-25 01:10:25 +01:00
Mark Olesen
dc1c37e464 COMP: add in plain lib/ directories for boost, cgal, fftw 
- these directories are sometimes used for a central, non-thirdparty, non-system
  installation

- leave gmp and mpfr as is, since it is not clear how these would interact with system
  versions
 2016-11-25 20:43:27 +01:00
Mark Olesen
58fad3ab79 BUG: snappyHexMesh with -decomposeParDict option (issue #265) 
- only occurs in combination with distributedTriSurfaceMesh in snappy.

- workaround similar to that previously used for surfaceRedistributePar
  (issue #60).

Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
 2016-11-24 12:02:11 +01:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict 
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
 2016-11-24 11:26:03 +01:00
Mark Olesen
95e7faf309 STYLE: use the more succinct forms for argList (issue #307) 
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
 2016-11-20 13:06:57 +01:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
Mark Olesen
e112eb503b ENH: provide ModifiableMeshedSurface class 
- A special purpose MeshedSurface that exposes the stored values
  for direct modification.

- Its usage should be restricted to special cases where the surface
  needs modifications as an atomic operation.
 2016-11-14 00:45:41 +01:00
Mark Olesen
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265). 
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
 2016-10-25 18:19:19 +02:00
mattijs
598da1ac25 ENH: surfaceCheck: added -outputThreshold option to manage file writing 2016-10-03 13:55:30 +01:00
Mark Olesen
99efe5f8d8 BUG: triSurface IO operators are asymmetrical (fixed #225) 
- Also reported as http://bugs.openfoam.org/view.php?id=2188
 2016-09-06 14:57:40 +02:00
Mark Olesen
29d5a10f97 ENH: add stream operators for MeshedSurface, UnsortedMeshedSurface 
- add corrsponding testing into surfaceMeshConvertTesting too
 2016-09-06 14:45:44 +02:00
mattijs
fc714ed67b ENH: surfaceCheck: survive triangles with duplicate vertices. Fixes #222 2016-08-31 16:47:36 +01:00
mattijs
af02ff3600 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-09 15:23:21 +00:00
mattijs
2a9c95e56e BUG: surfaceAdd: incorrect size when not merging regions. Fixes #144. 2016-11-09 15:22:59 +00:00
Mark Olesen
e8f6099a1f COMP: Newer CGAL versions break current CGAL wmake rules (issue #288) 
On 64-bit systems, the system installations of boost, cgal are under
lib64/. The behaviour for a ThirdParty build is mostly lib/ but this
can also be changing.

    Boost 1_62_0 and older build into 'lib/'.
    CGAL-4.9 builds into 'lib64/', older versions into 'lib/'.

Future-proof things by using lib$WM_COMPILER_LIB_ARCH for boost and
cgal build rules, and forcing these as build targets in the ThirdParty
makeCGAL as well.

--
STYLE: check for boost/version.hpp, CGAL/version.h instead their directories
 2016-11-04 12:05:35 +01:00
Mark Olesen
fb9f93dd7c ENH: propogate face area support into surface-type meshes (issue #266) 
* MeshedSurface / surfMesh / triSurface

- use shorter method names similar to those from volume meshes:

      Sf(), magSf(), Cf()

  instead of the longer ones from PrimitivePatch:

      faceAreas(), magFaceAreas(), faceCentres()

- similar names throughout to ease switching between triSurface and
  MeshedSurface storage.
 2016-10-20 08:36:02 +02:00
mattijs
40252e99aa COMP: surfaceCheck: edgei vs edgeI 2016-11-02 14:55:13 +00:00
mattijs
ac49daaf4d Merge remote-tracking branch 'origin/develop' into develop 
Conflicts:
	applications/utilities/surface/surfaceCheck/surfaceCheck.C
 2016-11-02 12:06:05 +00:00
mattijs
c90e6ed48c ENH: surfaceCheck: additional printing. Additional self-intersect test with reverse ray 2016-10-31 15:41:34 +00:00
Andrew Heather
6823cb02ab Merge branch 'merge-foundation' of develop.openfoam.com:Development/OpenFOAM-plus into merge-foundation 2016-10-04 14:49:34 +01:00
Andrew Heather
7c106cd43e GIT: Resolved conflict 2016-10-04 09:45:46 +01:00
Mark Olesen
3e0e4532fd STYLE: minor adjustments to doxygen comments 2016-10-04 09:16:08 +02:00
Andrew Heather
1fbcb686ff STYLE: Consistency updates 2016-09-23 16:52:46 +01:00
Andrew Heather
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
Mark Olesen
1fc2a73213 ENH: use meshedSurf API for surface writers (issue #104) 
- Allows passing of additional information (per-face zone ids) or possibly
  other things, while reducing the number of arguments to pass.

- In sampledTriSurfaceMesh, preserve the region information that was
  read in, passing it onwards via the UnsortedMeshSurface content.

  The Nastran surface writer is currently the only writer making use
  of this per-face zone information.
  Passing it through as a PSHELL attribute, which should retain the
  distinction for parts. (issue #204)
 2016-08-10 15:41:24 +02:00
Henry Weller
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr 
Requires gcc version 4.7 or higher
 2016-08-05 17:19:38 +01:00
Mark Olesen
6ed05f0cd3 STYLE: mention suppression of banner for surfaceMeshInfo, ... (issue #125) 2016-07-06 07:43:05 +02:00
Henry Weller
3990302a54 Updated and simplified the Doxygen documentation 2016-06-20 21:20:28 +01:00
Henry Weller
b16756115a Remove/replace deprecated functions and classes 2016-06-20 09:39:02 +01:00
Henry Weller
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
Henry Weller
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
Henry Weller
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
2d5ff31649 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
Henry Weller
8c6fa81eba vector::zero -> Zero 2016-04-16 18:34:41 +01:00
Henry Weller
6d9c7112c3 Updated header 2016-04-04 13:53:51 +01:00
Henry Weller
266651f1b9 surfaceMeshConvert: Reinstated missing error messages 2016-04-04 13:53:20 +01:00
Henry Weller
cb65ba71d7 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
Henry Weller
caf8776f9b SquareMatrix, SymmetricSquareMatrix: Changed the constructor from size to require only n 
This avoids the need to check that the m and n dimensions are the same.
 2016-03-22 14:13:48 +00:00
Henry Weller
67a51b1fdd Matrix: Added (i, j) addressing to allow support for addressing blocks of the matrix 
This change brings OpenFOAM into line with the standard matrix
addressing in other C++ libraries for better interoperability.
 2016-03-20 19:44:29 +00:00
Henry Weller
fa5867137d transformPoints, surfaceTransformPoints: Updated quaternion construction from Euler-angles 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2024
 2016-03-14 16:40:35 +00:00
Henry Weller
7ba41e0095 Removed duplicate, inconsistent and spurious comments in .C files 2016-02-29 18:33:54 +00:00
Henry Weller
cd852be3da OpenFOAM: Updated all libraries, solvers and utilities to use the new const-safe tmp 
The deprecated non-const tmp functionality is now on the compiler switch
NON_CONST_TMP which can be enabled by adding -DNON_CONST_TMP to EXE_INC
in the Make/options file.  However, it is recommended to upgrade all
code to the new safer tmp by using the '.ref()' member function rather
than the non-const '()' dereference operator when non-const access to
the temporary object is required.

Please report any problems on Mantis.

Henry G. Weller
CFD Direct.
 2016-02-26 17:31:28 +00:00
Andrew Heather
c35bcc05f4 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-06-27 23:22:54 +01:00
Andrew Heather
efb39a8790 ENH: (further) Doxygen documentation updates for module support 2016-06-27 20:34:19 +01:00
Mark Olesen
97943ed819 COMP: improve robustness and warning messages when building paraview plugins 2016-06-17 09:31:41 +02:00
Andrew Heather
158a925235 ENH: Updated xxx::zero->Zero 2016-04-28 14:17:06 +01:00
Andrew Heather
b9313ef2fe ENH: Consistency updates after Foundation merge and code tidying 2016-04-25 16:46:56 +01:00
andy
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
Henry Weller
96b0f62d04 surfaceCoarsen: Changed List<::... to List< ::... for gcc-4.5 2016-02-21 09:03:39 +00:00
mattijs
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file 
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
 2016-01-25 16:29:04 +00:00
mattijs
e424059208 ENH: glboal file handling: initial commit 
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
 2016-01-25 13:03:15 +00:00
Henry Weller
56fa7c0906 Update code to use the simpler C++11 template syntax removing spaces between closing ">"s 2016-01-10 22:41:16 +00:00
Henry Weller
4eba393fe1 Update code to use the simpler C++11 template syntax 2016-01-10 19:20:16 +00:00
Henry Weller
75cf86b769 Correct formatting: "forAll (" -> "forAll(" 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1967
 2016-01-09 23:10:16 +00:00
Andrew Heather
f0c3e8d599 STYLE: Updated version to 'plus' 2015-12-22 23:14:17 +00:00
Andrew Heather
04752147c8 GIT: Resolved conflict on merge from upstream 2015-12-22 16:49:44 +00:00
mattijs
ca834a93c8 BUG: triSurfaceMesh: operate non-parallel so not do a reduction of points 
Also redistributePar:
- recognise going from undecomposed to many
- read on master only
 2015-12-14 09:36:52 +00:00
mattijs
e44d484d37 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-dev-OpenCFD into develop 2015-12-09 16:26:39 +00:00
Andrew Heather
0e01c44129 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
Andrew Heather
5c9dff6146 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
Andrew Heather
abeef3313d STYLE: Updated header file documentation 2015-12-09 16:10:35 +00:00
Andrew Heather
8837a89237 STYLE: Updated links from openfoam.org to openfoam.com 2015-12-09 15:03:05 +00:00
mattijs
8a724e82a9 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-dev-OpenCFD into develop 2015-12-09 11:02:22 +00:00
mattijs
6510e5ce49 ENH: surfaceRedistributePar: switch off file modification checking. 2015-12-09 10:53:17 +00:00
Andrew Heather
8f1d043364 GIT: Resolved conflict 2015-12-09 09:32:38 +00:00
Andrew Heather
8400a1c19f ENH: Updated notImplemented(...)->NotImplemented messages 2015-12-08 22:56:15 +00:00
Andrew Heather
eafd5a3850 ENH: Updated Info, Warning and Error messages 2015-12-08 11:15:39 +00:00
Andrew Heather
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
Andrew Heather
73dac8c7ee ENH: Updating utilities based on internal development line 2015-12-02 10:17:28 +00:00
Henry Weller
e2ef006b91 applications: Update ...ErrorIn -> ...ErrorInFunction 
Avoids the clutter and maintenance effort associated with providing the
function signature string.
 2015-11-10 17:53:31 +00:00
mattijs
c6a3d4f3c5 ENH: surface: various updates to the surface utilities 
surfaceBooleanFeatures: use CGAL for intersection
surfaceCheck: write surface zoning as vtk file
surfaceInflate: new utility to offset surface
surfacePatch: replacement for surfaceAutoPatch. Also does cutting of surfaces.
 2015-11-10 15:04:32 +00:00
Henry Weller
8342cdc6ee Documentation: Use '-' rather than '+' for lists for Doxygen 2015-10-29 22:41:34 +00:00
Henry
3673b65b61 surfaceCheck: Make -blockMesh output easier to parse 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1534
 2015-02-16 22:15:54 +00:00
Henry
c778346c96 Formatting: Rationalized the indentation of #include 2015-02-10 20:35:50 +00:00
Henry
f4596ad247 Resolve issues relating to compilation with clang-3.5.0 2014-12-15 22:38:10 +00:00
OpenFOAM-admin
9fb26d59d3 GIT: Repo update 2014-12-11 08:35:10 +00:00
mattijs
18d73c1131 BUG: surfaceCheck: face based data 2014-09-26 17:39:37 +01:00
mattijs
723e5bd75c STYLE: surfaceCheck: use boundBox non-reduce constructor 2014-06-09 11:12:14 +01:00
OpenFOAM-admin
fbb3ddf2c4 Updated for release 2.3.0 2014-02-17 10:21:46 +00:00
mattijs
1f192f8b73 ENH: snappyHexMesh: have single region surface named as <surface> instead of <surface>_<region> 2014-01-27 12:44:45 +00:00
mattijs
ff50972634 ENH: surfaceCheck: added writing of zones as vtk file 2014-01-07 14:58:15 +00:00
mattijs
198a9a6adf ENH: surfaceLambdaMuSmooth: shortcut if mu=0 2013-12-20 16:00:26 +00:00
mattijs
fe4762ca58 ENH: surfaceLambdaMuSmooth: added reference 2013-12-18 12:11:49 +00:00
mattijs
7dfccf21ad ENH: surfaceFeatureExtract: excess dumping of obj files 2013-11-20 15:42:36 +00:00
mattijs
cde75af134 ENH: surfaceMeshTriangulate: extract faceZones 2013-10-01 16:26:36 +01:00
laurence
615a74626e ENH: foamyHexMesh: Include baffle handling 2013-09-25 12:37:19 +01:00
mattijs
71528efa13 BUG: surfaceFeatureExtract: checking for valid dictionary 2013-09-05 09:50:44 +01:00
mattijs
714799612e ENH: surfaceFeatureExtract: skip non-dictionary entries. 2013-09-04 16:23:49 +01:00
mattijs
f6757ce79e BUG: surfaceFeatureExtract: extraneous check for CGAL 2013-08-01 15:18:41 +01:00
mattijs
6c319ce47b ENH: surfaceSubset: add select-by-plane 2013-07-11 17:12:49 +01:00
mattijs
9fc91675b3 ENH: surfaceCheck: do self-intersection more efficiently 2013-06-21 12:34:25 +01:00
laurence
62f18ee7d5 BUG: extendedFeatureEdgeMesh: Add stream operators for sideVolumeType 2013-06-20 12:40:15 +01:00
mattijs
a26c9ebd55 ENH: surfaceCheck: new self-intersection test 2013-06-10 11:27:20 +01:00
mattijs
057691a6b4 STYLE: surfaceLambdaMuSmooth: remove unused code 2013-06-04 14:28:16 +01:00
laurence
aa6f0170a3 ENH: Add surfaceLambdaMuSmooth utility and remove surfaceSmooth 
Set lambda to the relaxation factor and mu to zero to replicate
laplacian smoothing from surfaceSmooth in the new utility
 2013-06-03 14:30:51 +01:00