Commit Graph

567 Commits

Author SHA1 Message Date
Mark Olesen
07ce0a547a COMP: try harder to find/use zoltan library 2017-03-28 10:57:37 +02:00
mattijs
2ce0aaddd4 ENH: splitMeshRegions: correct header. 2017-03-01 11:48:00 +00:00
Mark Olesen
a748ce1eaf STYLE: resolve COMP_FLAGS, COMPILE_FLAGS mismash in favour of COMP_FLAGS 2017-02-23 16:25:38 +01:00
Mark Olesen
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00
Mark Olesen
17d76e6261 ENH: boundBox 'reduce' method (related to #196)
reduce()
- parallel reduction of min/max values.
  Reduces coding for the callers.

  Eg,
      bb.reduce();

  instead of the previous method:
      reduce(bb.min(), minOp<point>());
      reduce(bb.max(), maxOp<point>());

STYLE:

- use initializer list for creating static content
- use point::min/point::max when defining standard boxes
2017-01-25 18:52:37 +01:00
Mark Olesen
0211b0a43b STYLE: correct the documented input names in header files (fixes #360) 2016-12-21 12:15:03 +01:00
mattijs
23a6cadfa6 BUG: redistributePar: remove inconsistent *ProcAddressing. Fixes #351. 2016-12-19 12:58:49 +00:00
mattijs
4f4b1d76c4 BUG: renumberMesh: Checking for cellProcAddressing after deleting it.
This is part of #340.
2016-12-14 17:21:56 +00:00
Mark Olesen
6f2b2aff40 STYLE: reduce script verbosity 2016-12-13 08:15:00 +01:00
Andrew Heather
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
Mark Olesen
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
mattijs
4a77294c7c ENH: renumberMesh: remove old files 2016-12-05 15:24:52 +00:00
Henry Weller
81de1dc9ac topoSet: cellZoneSet, pointZoneSet extensions
cellZones and pointZones can now be created in one action without the
need to first create a cellSet or pointSet and converting that to the
corresponding zone, e.g.

actions
(
    // Example: create cellZone from a box region
    {
        name    c0;
        type    cellZoneSet;
        action  new;
        source  boxToCell;
        sourceInfo
        {
            box   (0.04 0 0)(0.06 100 100);
        }
    }
);
2016-11-25 16:01:41 +00:00
mattijs
fa430cc407 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-23 12:10:33 +00:00
mattijs
8c08ad6667 ENH: mergeOrSplitBaffles: allow operation on selected patches. Fixes #314. 2016-11-23 12:09:31 +00:00
Mark Olesen
95e7faf309 STYLE: use the more succinct forms for argList (issue #307)
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
2016-11-20 13:06:57 +01:00
mattijs
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
Henry Weller
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
Henry Weller
5981836326 renumberMesh/Allwmake: Removed 'set -x' 2016-11-13 15:27:25 +00:00
Mark Olesen
e8f6099a1f COMP: Newer CGAL versions break current CGAL wmake rules (issue #288)
On 64-bit systems, the system installations of boost, cgal are under
lib64/. The behaviour for a ThirdParty build is mostly lib/ but this
can also be changing.

    Boost 1_62_0 and older build into 'lib/'.
    CGAL-4.9 builds into 'lib64/', older versions into 'lib/'.

Future-proof things by using lib$WM_COMPILER_LIB_ARCH for boost and
cgal build rules, and forcing these as build targets in the ThirdParty
makeCGAL as well.

--
STYLE: check for boost/version.hpp, CGAL/version.h instead their directories
2016-11-04 12:05:35 +01:00
mattijs
e8e0cfb416 ENH: mergeMeshes: in parallel make sure to put processor patches last. Fixes #239 2016-11-02 14:47:55 +00:00
Mark Olesen
2c06a905ab Cleanup endian support (closes #271)
- Place common code under OSspecific.

By including "endian.H", either one of WM_BIG_ENDIAN or WM_LITTLE_ENDIAN
will be defined.

Provides inline 32-bit and 64-bit byte swap routines that can be
used/re-used elsewhere.

The inplace memory swaps currently used by the VTK output are left for
the moment pending further cleanup of that code.
2016-10-17 12:02:01 +02:00
Andrew Heather
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
mattijs
cefe2ea541 BUG: singleCellMesh: writes constant mesh to 0 directory instead.
Fixes partially #93.
2016-08-10 15:49:09 +01:00
Mark Olesen
1fc2a73213 ENH: use meshedSurf API for surface writers (issue #104)
- Allows passing of additional information (per-face zone ids) or possibly
  other things, while reducing the number of arguments to pass.

- In sampledTriSurfaceMesh, preserve the region information that was
  read in, passing it onwards via the UnsortedMeshSurface content.

  The Nastran surface writer is currently the only writer making use
  of this per-face zone information.
  Passing it through as a PSHELL attribute, which should retain the
  distinction for parts. (issue #204)
2016-08-10 15:41:24 +02:00
Henry Weller
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
Henry Weller
aa30d0e7d5 checkMesh: Added option to write sets
- the checking for point-connected multiple-regions now also writes the
    conflicting points to a pointSet
  - with the -writeSets option it now also reconstructs & writes pointSets
2016-07-22 16:53:49 +01:00
Henry Weller
ab84d6941f Updated template formatting to C++11 2016-07-12 20:03:29 +01:00
Henry Weller
08bd802b42 checkGeometry, moveDynamicMesh: Convert processor IDs to 'List<label>'
Resolves bug-report http://bugs.openfoam.org/view.php?id=2140
2016-07-09 20:47:06 +01:00
Henry Weller
9e1486fee5 checkMesh, moveDynamicMesh: option -checkAMI writes the reconstructed AMI weights
Patch contributed by Mattijs Janssens
2016-07-05 15:35:16 +01:00
Henry Weller
dea6a3c6e8 wmake/Allwmake: Completed support for targetType 'objects'
Patch contributed by Mattijs Janssens
2016-06-24 15:25:11 +01:00
Henry Weller
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
Henry Weller
e2336fefd3 checkMesh: Added writing of faceSets and cellSets containing errors
In parallel the sets are reconstructed. e.g.

mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk

will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.

Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.

Patch contributed by Mattijs Janssens
2016-06-12 20:51:07 +01:00
Henry Weller
35dba48db1 createBaffles: filter zero-sized patches
Resolves patch request http://bugs.openfoam.org/view.php?id=2103
Patch contributed by Mattijs Janssens
2016-05-29 22:51:15 +01:00
Henry Weller
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
ce0cd35185 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
Henry Weller
bd52e35f77 checkMesh: Updated the closed-ness test for ACMI to use FV
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2088
2016-05-13 16:23:02 +01:00
Henry Weller
6164c2f262 Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
Henry Weller
81f31acbb3 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
3c053c2fe6 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField()
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
2016-04-30 21:40:09 +01:00
Henry Weller
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
Henry Weller
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
2d5ff31649 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
Henry Weller
5f13806591 Updated headers 2016-04-21 21:07:28 +01:00
Henry Weller
0aaf154100 utilities/mesh/manipulation: Rationalized "End" message 2016-04-21 21:06:45 +01:00
Henry Weller
d57464a99d transformPoints: Added "End" message
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2059
2016-04-21 21:05:47 +01:00
Henry Weller
8c6fa81eba vector::zero -> Zero 2016-04-16 18:34:41 +01:00
Henry Weller
a9b8bb13e0 applications/.*/Allwmake: Updated to support "stop on 1st error"
Patch contributed by Bruno Santos
Resolved bug-report http://www.openfoam.org/mantisbt/view.php?id=2042
2016-04-04 09:03:40 +01:00
Henry Weller
730f89dc9d Use Zero rather than pTraits<Type>::zero unless a static typed '0' is required 2016-03-22 17:46:52 +00:00