Commit Graph

1546 Commits

Author SHA1 Message Date
Mark Olesen
07ec2b3abd STYLE: eliminate most use of _foamSource outside of the etc/ hierarchy 2017-02-23 10:58:55 +01:00
Mark Olesen
0ffae6461a ENH: creating a bounding box without points yields an inverted box
- The code create a box with a (0,0,0) point.
  The new definition is more logical and makes it very easy to grow
  the bounding box to include new points. It also simplifies much of
  the logic in the constructors.

- Use ROOTVGREAT instead of VGREAT for sizing greatBox and invertedBox.
  Avoids some overflow issues reported by Mattijs (thus GREAT has been
  used in treeBoundBox), but might still need further revision.
2017-02-01 12:15:00 +00:00
Mark Olesen
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00
Mark Olesen
17d76e6261 ENH: boundBox 'reduce' method (related to #196)
reduce()
- parallel reduction of min/max values.
  Reduces coding for the callers.

  Eg,
      bb.reduce();

  instead of the previous method:
      reduce(bb.min(), minOp<point>());
      reduce(bb.max(), maxOp<point>());

STYLE:

- use initializer list for creating static content
- use point::min/point::max when defining standard boxes
2017-01-25 18:52:37 +01:00
Mark Olesen
1cb2966722 ENH: add blockMesh -sets option to write cellZones as cellSets (closes #348) 2017-01-25 13:16:49 +01:00
Mark Olesen
d2fc56d6be STYLE: added note about limitation of the ccm conversion 2016-12-22 17:44:21 +01:00
Mark Olesen
608bb5d83b COMP: update lnInclude directories when building (issue #364)
- Could be related to interrupted builds.
  So if there are any parts of the build that rely on an explicit
  'wmakeLnInclude', make sure that the contents are properly updated.

--

ENH: improved feedback from top-level Allwmake

- Report which section (libraries, applications) is being built.

- Provide final summary of date, version, etc, which can be helpful
  for later diagnosis or record keeping.

- The -log=XXX option for Allwmake now accepts a directory name
  and automatically appends an appropriate log name.
  Eg,
      ./Allwmake -log=logs/  ->> logs/log.linux64GccDPInt32Opt

  The default name is built from the value of WM_OPTIONS.

--

BUG: shell not exiting properly in combination with -log option

- the use of 'tee' causes the shell to hang around.
  Added an explicit exit to catch this.

--

- Detecting the '-k' (-non-stop) option at the top-level Allwmake, which
  may improve robustness.

- Explicit continue-on-error for foamyMesh (as optional component)

- unify format of script messages for better readability

COMP: reduce warnings when building Pstream (old-style casts in openmpi)
2016-12-22 11:26:29 +01:00
Mark Olesen
0211b0a43b STYLE: correct the documented input names in header files (fixes #360) 2016-12-21 12:15:03 +01:00
mattijs
23a6cadfa6 BUG: redistributePar: remove inconsistent *ProcAddressing. Fixes #351. 2016-12-19 12:58:49 +00:00
Andrew Heather
91f8176a75 STYLE: using messaging macros when referring to function name 2016-12-16 16:56:55 +00:00
Mark Olesen
af74809786 ENH: increase precision of points for some mesh conversion applications 2016-12-15 21:35:14 +01:00
Mark Olesen
a32a915d2e BUG: polyMesh removeFiles side-effect for blockMesh viewer (issue #346)
- polyMesh constructor from cell shapes invoked 'removeFiles'.
  This may or may not be what the caller wants or expects.
  With the ParaView blockMesh viewer, this behaviour causes deletion of
  all mesh data (points, faces, etc) when the viewer is refreshed.

  Triggered even when just building the blockMesh topology.

- only a few places that construct a polyMesh from cell shapes
  (mostly mesh conversion utilities).
  Ensure that the file removal (if any) occurs in the application
  and *not* as a side-effect of calling the polyMesh constructor.

--

  blockMesh (application)
    - The placement of the removeFiles seems to also remove freshly
      generated sets (Bug or feature to remove sets?)

  +-----------------------+---------------+------------------+
  | Application           | Constructor   | removeFiles      |
  |                       | (patch info)  | new / existing   |
  +-----------------------+---------------+------------------+
  | blockMesh             | dictionary    | existing         |
  | ansysToFoam           | names         | new              |
  | cfx4ToFoam            | dictionary    | new              |
  | fluentMeshToFoam      | names         | new              |
  | gambitToFoam          | dictionary    | new              |
  | gmshToFoam            | names         | new              |
  | ideasUnvToFoam        | names         | new              |
  | kivaToFoam            | dictionary    | new              |
  | mshToFoam             | names         | new              |
  | netgenNeutralToFoam   | names         | new              |
  | plot3dToFoam          | names         | new              |
  | tetgenToFoam          | names         | new              |
  | vtkUnstructuredToFoam | names         | new              |
  +-----------------------+---------------+------------------+
2016-12-15 19:07:05 +01:00
mattijs
4f4b1d76c4 BUG: renumberMesh: Checking for cellProcAddressing after deleting it.
This is part of #340.
2016-12-14 17:21:56 +00:00
Andrew Heather
a3ef5cd137 Merge branch 'feature-chunkingComms' into 'develop'
Pstream: added maxCommsSize setting to do (unstructured) parallel transfers in blocks.

Tested:
- with maxCommsSize 0 produces exactly same result as plus.develop
- compiles with label64
- with maxCommsSize e.g. 3 produces exactly same result as plus.develop
- with maxCommsSize=0 exactly the same messages (with Pstream::debug = 1) as plus.develop

See merge request !85
2016-12-14 15:18:42 +00:00
mattijs
4ff163aed7 COMP: combinePatchFaces: missing include file 2016-12-14 11:45:32 +00:00
Mark Olesen
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
mattijs
4a77294c7c ENH: renumberMesh: remove old files 2016-12-05 15:24:52 +00:00
Mark Olesen
6f2b2aff40 STYLE: reduce script verbosity 2016-12-13 08:15:00 +01:00
Andrew Heather
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
Mark Olesen
026ed13c10 ENH: warn user when using constant/polyMesh/blockMeshDict (issue #309)
- the user might otherwise be unaware of the changed location
2016-11-29 12:14:48 +01:00
mattijs
3077a11c0d Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-28 09:33:23 +00:00
mattijs
da4dad4382 ENH: snappyHexMesh: improved comment 2016-11-28 09:32:58 +00:00
Henry Weller
81de1dc9ac topoSet: cellZoneSet, pointZoneSet extensions
cellZones and pointZones can now be created in one action without the
need to first create a cellSet or pointSet and converting that to the
corresponding zone, e.g.

actions
(
    // Example: create cellZone from a box region
    {
        name    c0;
        type    cellZoneSet;
        action  new;
        source  boxToCell;
        sourceInfo
        {
            box   (0.04 0 0)(0.06 100 100);
        }
    }
);
2016-11-25 16:01:41 +00:00
Mark Olesen
58fad3ab79 BUG: snappyHexMesh with -decomposeParDict option (issue #265)
- only occurs in combination with distributedTriSurfaceMesh in snappy.

- workaround similar to that previously used for surfaceRedistributePar
  (issue #60).

Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
2016-11-24 12:02:11 +01:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
2016-11-24 11:26:03 +01:00
mattijs
fa430cc407 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-23 12:10:33 +00:00
mattijs
8c08ad6667 ENH: mergeOrSplitBaffles: allow operation on selected patches. Fixes #314. 2016-11-23 12:09:31 +00:00
Andrew Heather
1f826361c6 STYLE: Consistency updates to change input of <var>Name to <var>. Fixes #306 2016-11-22 14:50:33 +00:00
Mark Olesen
95e7faf309 STYLE: use the more succinct forms for argList (issue #307)
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
2016-11-20 13:06:57 +01:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
mattijs
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
Henry Weller
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
Henry Weller
5981836326 renumberMesh/Allwmake: Removed 'set -x' 2016-11-13 15:27:25 +00:00
mattijs
a20a17f54b Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-07 09:29:36 +00:00
mattijs
82fd902b3e ENH: snappyHexMeshDict: fix comment 2016-11-07 09:29:22 +00:00
Mark Olesen
e8f6099a1f COMP: Newer CGAL versions break current CGAL wmake rules (issue #288)
On 64-bit systems, the system installations of boost, cgal are under
lib64/. The behaviour for a ThirdParty build is mostly lib/ but this
can also be changing.

    Boost 1_62_0 and older build into 'lib/'.
    CGAL-4.9 builds into 'lib64/', older versions into 'lib/'.

Future-proof things by using lib$WM_COMPILER_LIB_ARCH for boost and
cgal build rules, and forcing these as build targets in the ThirdParty
makeCGAL as well.

--
STYLE: check for boost/version.hpp, CGAL/version.h instead their directories
2016-11-04 12:05:35 +01:00
mattijs
e8e0cfb416 ENH: mergeMeshes: in parallel make sure to put processor patches last. Fixes #239 2016-11-02 14:47:55 +00:00
mattijs
ac49daaf4d Merge remote-tracking branch 'origin/develop' into develop
Conflicts:
	applications/utilities/surface/surfaceCheck/surfaceCheck.C
2016-11-02 12:06:05 +00:00
mattijs
aa0b3934b0 ENH: snappyHexMeshDict: improved comment 2016-10-26 16:03:41 +01:00
Andrew Heather
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
Mark Olesen
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265).
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
2016-10-25 18:19:19 +02:00
Andrew Heather
4408d47075 MRG: Merged develop branch and resolved conflicts 2016-10-19 13:33:00 +01:00
Andrew Heather
509517e996 ENH: gmshToFoam: Updated for line entries 2016-10-19 13:20:02 +01:00
Mark Olesen
2c06a905ab Cleanup endian support (closes #271)
- Place common code under OSspecific.

By including "endian.H", either one of WM_BIG_ENDIAN or WM_LITTLE_ENDIAN
will be defined.

Provides inline 32-bit and 64-bit byte swap routines that can be
used/re-used elsewhere.

The inplace memory swaps currently used by the VTK output are left for
the moment pending further cleanup of that code.
2016-10-17 12:02:01 +02:00
Henry Weller
009203188f blockMesh: New experimental support for projecting block face point to geometric surfaces
For example, to mesh a sphere with a single block the geometry is defined in the
blockMeshDict as a searchableSurface:

    geometry
    {
        sphere
        {
            type searchableSphere;
            centre (0 0 0);
            radius 1;
        }
    }

The vertices, block topology and curved edges are defined in the usual
way, for example

    v 0.5773502;
    mv -0.5773502;

    a 0.7071067;
    ma -0.7071067;

    vertices
    (
        ($mv $mv $mv)
        ( $v $mv $mv)
        ( $v  $v $mv)
        ($mv  $v $mv)
        ($mv $mv  $v)
        ( $v $mv  $v)
        ( $v  $v  $v)
        ($mv  $v  $v)
    );

    blocks
    (
        hex (0 1 2 3 4 5 6 7) (10 10 10) simpleGrading (1 1 1)
    );

    edges
    (
        arc 0 1 (0 $ma $ma)
        arc 2 3 (0 $a $ma)
        arc 6 7 (0 $a $a)
        arc 4 5 (0 $ma $a)

        arc 0 3 ($ma 0 $ma)
        arc 1 2 ($a 0 $ma)
        arc 5 6 ($a 0 $a)
        arc 4 7 ($ma 0 $a)

        arc 0 4 ($ma $ma 0)
        arc 1 5 ($a $ma 0)
        arc 2 6 ($a $a 0)
        arc 3 7 ($ma $a 0)
    );

which will produce a mesh in which the block edges conform to the sphere
but the faces of the block lie somewhere between the original cube and
the spherical surface which is a consequence of the edge-based
transfinite interpolation.

Now the projection of the block faces to the geometry specified above
can also be specified:

    faces
    (
        project (0 4 7 3) sphere
        project (2 6 5 1) sphere
        project (1 5 4 0) sphere
        project (3 7 6 2) sphere
        project (0 3 2 1) sphere
        project (4 5 6 7) sphere
    );

which produces a mesh that actually conforms to the sphere.

See OpenFOAM-dev/tutorials/mesh/blockMesh/sphere

This functionality is experimental and will undergo further development
and generalization in the future to support more complex surfaces,
feature edge specification and extraction etc.  Please get involved if
you would like to see blockMesh become a more flexible block-structured
mesher.

Henry G. Weller, CFD Direct.
2016-10-13 15:05:24 +01:00
Henry Weller
eb5e2c923c snappyHexMesh: Added support for scotch redistribution
Requires scotch-6.?.?
2016-10-12 16:28:26 +01:00
Henry Weller
9c2892cd82 Removed #define __STDC_LIMIT_MACROS needed for C++ < 11
See http://bugs.openfoam.org/view.php?id=1474
2016-10-04 08:08:42 +01:00
Henry Weller
4bdf712b35 triangle storage: Return barycentric coordinates as FixedList instead of List
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2278
2016-09-30 16:22:55 +01:00
Henry Weller
025791559d blockMesh: Added printing of the block description to the '-help' output
blockMesh -help

Usage: blockMesh [OPTIONS]
options:
  -blockTopology    write block edges and centres as .obj files
  -case <dir>       specify alternate case directory, default is the cwd
  -dict <file>      specify alternative dictionary for the blockMesh description
  -noFunctionObjects
                    do not execute functionObjects
  -region <name>    specify alternative mesh region
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Block description

  For a given block, the correspondence between the ordering of
  vertex labels and face labels is shown below.
  For vertex numbering in the sequence 0 to 7 (block, centre):
    faces 0 (f0) and 1 are left and right, respectively;
    faces 2 and 3 are bottom and top;
    and faces 4 and 5 are front the back:

           4 ---- 5
      f3   |\     |\   f5
      |    | 7 ---- 6   \
      |    0 |--- 1 |    \
      |     \|     \|    f4
      f2     3 ---- 2

            f0 ----- f1

Using: OpenFOAM-dev (see www.OpenFOAM.org)
Build: dev-dc59c63351e7
2016-09-25 20:05:12 +01:00
mattijs
30442158b1 ENH: snappyHexMesh: added -region option (fixes #223) 2016-08-31 09:44:34 +01:00