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333 Commits

Author SHA1 Message Date
mattijs
db3699f8ab ENH: redistributePar: remove shm data 2016-12-06 09:10:30 +00:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict 
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
 2016-11-24 11:26:03 +01:00
mattijs
d9740aa33e ENH: redistributePar: remove pointFields 2016-11-21 17:20:34 +00:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
mattijs
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
Mark Olesen
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265). 
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
 2016-10-25 18:19:19 +02:00
Mark Olesen
3e0e4532fd STYLE: minor adjustments to doxygen comments 2016-10-04 09:16:08 +02:00
Andrew Heather
bd0e982d99 MRG: Initial commit after latest Foundation merge 2016-09-30 11:16:28 +01:00
Andrew Heather
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
Henry Weller
9e1e9011a5 decomposePar: Corrected construction of cloud for processors 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2239
 2016-09-21 17:19:58 +01:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
Henry Weller
5b1ae76abf reconstructPar: Handle the copy of the 'uniform' directory when only 1 region is reconstructed 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2186
 2016-08-09 16:42:48 +01:00
Henry Weller
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr 
Requires gcc version 4.7 or higher
 2016-08-05 17:19:38 +01:00
Mark Olesen
70ba9e0cc0 For issue #202, re-adjust commit c3ec65d35b to use zero-gradient instead 
- consistent with approach used elsewhere. Generates smaller files.
 2016-08-02 21:56:40 +02:00
Mark Olesen
c3ec65d35b ENH: decomposePar -cellDist misses patches (issue #202) 
- Propagate cellDist information from internal to patch fields too

NOTE: uses C++11 'auto' and a range-based for loop
 2016-08-02 16:39:20 +02:00
Henry Weller
43df3e4192 reconstructPar: Added support for decomposing "uniform" directories in multi-region cases 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2156
 2016-07-20 18:47:58 +01:00
Henry Weller
ef54ab7c59 decomposePar: Added support for decomposing "uniform" directories in multi-region cases 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2156
 2016-07-20 16:41:45 +01:00
Henry Weller
ab84d6941f Updated template formatting to C++11 2016-07-12 20:03:29 +01:00
Henry Weller
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
mattijs
8bdc7e01bf Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-06-29 10:43:51 +01:00
mattijs
49e4475b46 STYLE: redistributePar: indentation 2016-06-29 10:43:36 +01:00
mattijs
ca9923932a BUG: decomposePar: force creation of uniform dir. Fixes #163 2016-06-27 11:18:06 +01:00
Henry Weller
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
d6ce71f39a reconstructPar: Added '-noFields' option 2016-05-17 09:25:29 +01:00
Henry Weller
ce0cd35185 Patches contributed by Mattijs Janssens: 
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
 2016-05-15 16:36:48 +01:00
Henry Weller
32762aa1f9 Change field loop index from "fieldI" to "fieldi" 2016-05-02 18:20:48 +01:00
Henry Weller
81f31acbb3 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
3c053c2fe6 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField() 
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
 2016-04-30 21:40:09 +01:00
Andrew Heather
b9313ef2fe ENH: Consistency updates after Foundation merge and code tidying 2016-04-25 16:46:56 +01:00
Henry Weller
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
andy
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
Henry Weller
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
2d5ff31649 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
Henry Weller
cb65ba71d7 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
Andrew Heather
c35bcc05f4 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-06-27 23:22:54 +01:00
Andrew Heather
efb39a8790 ENH: (further) Doxygen documentation updates for module support 2016-06-27 20:34:19 +01:00
Henry Weller
99a10ecea6 Boundary conditions: Added extrapolatedCalculatedFvPatchField 
To be used instead of zeroGradientFvPatchField for temporary fields for
which zero-gradient extrapolation is use to evaluate the boundary field
but avoiding fields derived from temporary field using field algebra
inheriting the zeroGradient boundary condition by the reuse of the
temporary field storage.

zeroGradientFvPatchField should not be used as the default patch field
for any temporary fields and should be avoided for non-temporary fields
except where it is clearly appropriate;
extrapolatedCalculatedFvPatchField and calculatedFvPatchField are
generally more suitable defaults depending on the manner in which the
boundary values are specified or evaluated.

The entire OpenFOAM-dev code-base has been updated following the above
recommendations.

Henry G. Weller
CFD Direct
 2016-02-20 22:44:37 +00:00
Henry Weller
472fa0674a Update headers 2016-02-02 20:09:58 +00:00
Henry Weller
8b9698ad43 processorPolyPatch, processorCyclicPolyPatch: Rationalized the construction of the patch name 
This change ensures that these patches are named consistently so that
they can be looked-up as required in e.g. patchMeanVelocityForce
 2016-02-02 20:07:16 +00:00
mattijs
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file 
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
 2016-01-25 16:29:04 +00:00
mattijs
e424059208 ENH: glboal file handling: initial commit 
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
 2016-01-25 13:03:15 +00:00
Henry Weller
56fa7c0906 Update code to use the simpler C++11 template syntax removing spaces between closing ">"s 2016-01-10 22:41:16 +00:00
Henry Weller
4eba393fe1 Update code to use the simpler C++11 template syntax 2016-01-10 19:20:16 +00:00
Andrew Heather
f0c3e8d599 STYLE: Updated version to 'plus' 2015-12-22 23:14:17 +00:00
mattijs
8864223aed ENH: copyright: make consistent with OpenFOAM-history 2015-12-19 14:22:30 +00:00
Andrew Heather
5c9dff6146 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
Andrew Heather
8837a89237 STYLE: Updated links from openfoam.org to openfoam.com 2015-12-09 15:03:05 +00:00
Andrew Heather
eafd5a3850 ENH: Updated Info, Warning and Error messages 2015-12-08 11:15:39 +00:00
Andrew Heather
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
mattijs
f0bc2d9faa ENH: parallel: added -decomposeParDict option to 
- foamyHexMesh
- snappyHexMesh
- decomposePar
 2015-11-24 17:35:18 +00:00
mattijs
916dcb8685 ENH: parallel: overhaul of parallel mapping 
- redistributePar to have almost (complete) functionality of decomposePar+reconstructPar
- low-level distributed Field mapping
- support for mapping surfaceFields (including flipping faces)
- support for decomposing/reconstructing refinement data
 2015-11-17 15:05:05 +00:00
Henry Weller
e2ef006b91 applications: Update ...ErrorIn -> ...ErrorInFunction 
Avoids the clutter and maintenance effort associated with providing the
function signature string.
 2015-11-10 17:53:31 +00:00
Henry Weller
87b26d09cb reconstructPar: Corrected time directory for reconstructed sets 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1880
 2015-10-27 16:27:04 +00:00
Henry
82c0cc5312 timeSelector: Rename option zeroTime -> withZero for consistency with the noZero option 2015-04-25 15:12:08 +01:00
Henry
9c6a3c66d7 reconstructParMesh: Correct handling of time and constant command-line options 
Resolves bug-report http://openfoam.org/mantisbt/view.php?id=1641
 2015-04-18 11:51:51 +01:00
Henry
5a12edc36c reconstructParMesh: Enable -constant and -zeroTime options 2015-04-12 10:01:33 +01:00
Henry
0bf2543df6 utilities: Correct "End" statement to be consistent with all other applications 2015-02-12 22:14:02 +00:00
Henry
525a0b3e0f decomposePar: Do not register Lagrangian IOFields as the names may conflict with those of volFields 
Required change to IOobjectList to support the optional no-registration specification
 2015-02-12 21:59:17 +00:00
Henry
d01afadbc1 Name fields to avoid duplicate registration 2015-02-12 12:33:45 +00:00
Henry
c778346c96 Formatting: Rationalized the indentation of #include 2015-02-10 20:35:50 +00:00
OpenFOAM-admin
9fb26d59d3 GIT: Repo update 2014-12-11 08:35:10 +00:00
mattijs
2123632db2 ENH: redistributePar: allow time override 2014-06-02 15:37:58 +01:00
mattijs
8e76c66558 ENH: redistributePar: start with all patches present 2014-03-20 16:46:38 +00:00
andy
9688b6ccdc BUG: decomposePar - updated to handle multiple processor cyclic patches - mantis 879 2014-02-21 16:18:00 +00:00
OpenFOAM-admin
fbb3ddf2c4 Updated for release 2.3.0 2014-02-17 10:21:46 +00:00
mattijs
6d5dd7e30d ENH: decomposePar: corrected comment in header 2014-01-28 10:42:46 +00:00
mattijs
7506490ecf STYLE: reconstructParMesh: typo in comment 2014-01-27 12:29:52 +00:00
mattijs
311288a1e0 STYLE: reconstructPar: added comment 2014-01-20 09:38:13 +00:00
mattijs
8eccdc479c BUG: redistributePar: do not allow functionObjects (runTime++ re-executes them) 2014-01-09 14:35:05 +00:00
mattijs
d70442a5fe ENH: reconstructParMesh: filtering region0 2014-01-09 10:25:11 +00:00
mattijs
e7156dbec0 ENH: reconstructParMesh: handle times without meshes 2014-01-09 10:20:26 +00:00
mattijs
2dfa827af1 ENH: reconstructPar: pick up cellSets from current time instead of mesh time 2013-12-16 12:43:17 +00:00
mattijs
b99906f32d BUG: reconstructPar: setting time (#1107) 2013-12-13 16:53:07 +00:00
andy
c0f93b84bf ENH: reconstructParMesh - added support for handling multiple time steps 2013-12-04 08:47:48 +00:00
mattijs
6bdc55c825 ENH: decomposePar: decompose sets 2013-11-27 16:04:15 +00:00
mattijs
0adb707ec7 ENH: reconstructParMesh: write cellDist field to 0 2013-11-20 16:03:02 +00:00
mattijs
bcc8f6013f ENH: reconstructPar: always reconstruct cellSets, faceSets, pointSets 2013-11-07 12:32:40 +00:00
mattijs
fa328ab678 ENH: reconstructPar: additional printing 2013-10-30 15:12:36 +00:00
mattijs
61966615ee ENH: decomposePar: decompose hexRef8 data (snappyHexMesh) 2013-10-08 14:57:22 +01:00
mattijs
5ac31aabc8 ENH: FieldMapper: extend with unmapped checking flag 2013-09-12 15:37:53 +01:00
mattijs
8fb58d0e88 BUG: reconstructPar: disallow explicit conversion of instant 2013-09-10 09:07:27 +01:00
mattijs
f9139aa031 ENH: decomposePar: added logic for preserving baffles 2013-08-07 11:03:01 +01:00
mattijs
fd5cebcd47 ENH: decompositionMethod: move constraints into library 2013-08-02 17:41:47 +01:00
mattijs
968c01fd20 ENH: reconstructParMesh: added -cellDist option like decomposePar 2013-08-01 13:14:01 +01:00
mattijs
1f64e5c7f5 ENH: reconstructPar: added reconstructing cellSets, pointSets, faceSets 2013-06-14 14:56:33 +01:00
mattijs
ba45a48caf ENH: decomposePar: decomposing cellSets, faceSets, pointSets 2013-06-14 12:46:32 +01:00
mattijs
9ffb6c3f99 STYLE: processor*patch: unused argument 2013-05-22 17:26:05 +01:00
mattijs
c4a4611b0f Merge remote-tracking branch 'origin/feature/procAgglom' 
Conflicts:
	src/OpenFOAM/meshes/lduMesh/lduMesh.H
 2013-05-02 14:44:59 +01:00
mattijs
d7cadf4937 Merge remote-tracking branch 'origin/master' into feature/procAgglom 
Conflicts:
	src/OpenFOAM/db/IOstreams/Pstreams/Pstream.H
	src/OpenFOAM/db/IOstreams/Pstreams/UPstream.C
	src/OpenFOAM/db/IOstreams/Pstreams/UPstream.H
	src/OpenFOAM/db/IOstreams/Pstreams/combineGatherScatter.C
	src/OpenFOAM/db/IOstreams/Pstreams/gatherScatter.C
	src/OpenFOAM/db/IOstreams/Pstreams/gatherScatterList.C
	src/OpenFOAM/matrices/lduMatrix/solvers/GAMG/interfaceFields/processorGAMGInterfaceField/processorGAMGInterfaceField.C
	src/OpenFOAM/matrices/lduMatrix/solvers/GAMG/interfaceFields/processorGAMGInterfaceField/processorGAMGInterfaceField.H
	src/OpenFOAM/matrices/lduMatrix/solvers/GAMG/interfaces/GAMGInterface/GAMGInterface.H
	src/finiteVolume/fvMesh/fvMesh.H
 2013-04-23 09:41:15 +01:00
andy
34ac08a931 ENH: Code updates following changed to IOobjectList 2013-04-08 15:33:02 +01:00
andy
951c8436aa ENH: Applying Gijs' patch: Update header documentation for utilities 2013-02-21 10:54:34 +00:00
mattijs
ea8d290191 ENH: communicators: initial version - extended Pstream API 2013-02-04 10:17:37 +00:00
Henry
2eb05ebb87 reconstructPar: -newTimes no longer constructs the mesh if all times are already reconstructed 2013-01-25 12:42:54 +00:00
mattijs
b20b5d3706 ENH: decomposePar: corrected dictionaries 2013-01-09 14:52:51 +00:00
Henry
db89978ade Updated headers for Laurence and Andy 2012-12-17 11:42:00 +00:00
laurence
057eff0e59 ENH: update fvMeshDistribute and domainDecomposition to use new 
coupledPolyPatch constructor
 2012-12-11 17:07:12 +00:00
mattijs
da17674f0f ENH: decomposePar,reconsturctPar: added -allRegions option 2012-09-26 12:08:43 +01:00
mattijs
c1ef233e5d ENH: pointMesh: use MeshObject form 2012-08-31 12:57:17 +01:00
mattijs
1f7d24e617 STYLE: decomposeParDict: added comment 2012-07-10 10:03:15 +01:00
mattijs
32f31a4fef ENH: reconstructPar: -newTimes cleanup 2012-07-02 15:33:50 +01:00