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683 Commits

Author SHA1 Message Date
mattijs
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file 
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
 2016-01-25 16:29:04 +00:00
mattijs
e424059208 ENH: glboal file handling: initial commit 
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
 2016-01-25 13:03:15 +00:00
Andrew Heather
f0c3e8d599 STYLE: Updated version to 'plus' 2015-12-22 23:14:17 +00:00
mattijs
47b86eec96 BUG: execFlowFunctionObjects: missing -noRead 
Fixes #40
 2015-12-17 09:03:57 +00:00
mattijs
5324bd5c54 STYLE: execFlowFunctionObjects: remove excess Foam:: 2015-12-16 10:40:22 +00:00
sergio
6d5e995f36 BUG: Adding #include "createFvOptions.H" to execFlowFunctionObjects.C 2015-12-15 16:31:29 -08:00
Andrew Heather
5c9dff6146 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
Andrew Heather
abeef3313d STYLE: Updated header file documentation 2015-12-09 16:10:35 +00:00
Andrew Heather
8837a89237 STYLE: Updated links from openfoam.org to openfoam.com 2015-12-09 15:03:05 +00:00
Andrew Heather
e929241cd6 STYLE: Minor code tweaks 2015-12-09 10:29:12 +00:00
Andrew Heather
8f1d043364 GIT: Resolved conflict 2015-12-09 09:32:38 +00:00
Andrew Heather
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
Henry Weller
736621b945 fvOptions: Reorganized and updated to simplify use in sub-models and maintenance 
fvOptions are transferred to the database on construction using
fv::options::New which returns a reference.  The same function can be
use for construction and lookup so that fvOptions are now entirely
demand-driven.

The abstract base-classes for fvOptions now reside in the finiteVolume
library simplifying compilation and linkage.  The concrete
implementations of fvOptions are still in the single monolithic
fvOptions library but in the future this will be separated into smaller
libraries based on application area which may be linked at run-time in
the same manner as functionObjects.
 2015-12-02 11:49:52 +00:00
Henry Weller
ac2a275a75 wallHeatFlux: Corrected sign of radiative heat-flux 
Corrects feature-request http://www.openfoam.org/mantisbt/view.php?id=1856
Patch provided by Juho Peltola
 2015-12-02 11:47:11 +00:00
Andrew Heather
73dac8c7ee ENH: Updating utilities based on internal development line 2015-12-02 10:17:28 +00:00
Henry Weller
ba2f46f12a applications: Added fvOptions library to link 2015-12-01 16:09:19 +00:00
mattijs
cee6887d68 ENH: sampledSurfaces: added 'bounds' option 
- bounds option (see $FOAM_UTILITIES/postProcessing/sampling/sample/sampleDict)
- fixes memory error http://www.openfoam.org/mantisbt/view.php?id=1487
- cleans up iso surface normal orientation
 2015-11-26 10:41:34 +00:00
mattijs
61dd625227 ENH: checkMesh: have -writeSets option 
- checkMesh has option to write faceSets or (outside of) cellSets as
sampledSurface format. It automatically reconstructs the set on the master
and writes it to the postProcessing folder (as any sampledSurface). E.g.

    mpirun -np 6 checkMesh -allTopology -allGeometry -writeSets vtk -parallel

- fixed order writing of symmTensor in Ensight writers
 2015-11-23 15:24:33 +00:00
Henry Weller
d968ee30e1 TurbulenceModels: Improved instantiation of single-phase models in solvers 
Simplifies lookup of RAS or LES models
 2015-11-18 21:10:03 +00:00
mattijs
916dcb8685 ENH: parallel: overhaul of parallel mapping 
- redistributePar to have almost (complete) functionality of decomposePar+reconstructPar
- low-level distributed Field mapping
- support for mapping surfaceFields (including flipping faces)
- support for decomposing/reconstructing refinement data
 2015-11-17 15:05:05 +00:00
Henry Weller
22a4b5776b createTurbulenceFields: Specification of turbulence fields now command-line option 
Usage: createTurbulenceFields [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -fields <wordReList>
                    specify which turbulence fields (k, epsilon, omega, R) to
                    write - eg '(k omega)' or '(R)' or '(.*)'.
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Resolves feature request http://www.openfoam.org/mantisbt/view.php?id=1912
 2015-11-13 10:55:34 +00:00
Henry Weller
e2ef006b91 applications: Update ...ErrorIn -> ...ErrorInFunction 
Avoids the clutter and maintenance effort associated with providing the
function signature string.
 2015-11-10 17:53:31 +00:00
Henry Weller
42fb1b9e8e Updated notImplemented -> NotImplemented 
The new NotImplemented macro uses __PRETTY_FUNCTION__ for GNU compatible
compilers otherwise __func__ to provide the function name string.
 2015-11-01 10:26:37 +00:00
Henry Weller
42b3f1c9dc wallHeatFlux: Add support for radiative and total heat-fluxes 
Patch provided by Daniel Jasinski
Resolves feature request http://www.openfoam.org/mantisbt/view.php?id=1856
 2015-10-30 14:32:26 +00:00
Henry Weller
557c8adba8 Added "-region" option to wallGradU, temporalInterpolate and pPrime2 
Patches provided by Bruno Santos
Resolves feature-request http://www.openfoam.org/mantisbt/view.php?id=1861
 2015-10-05 11:33:13 +01:00
Henry Weller
4c9eb4c2e9 ptot: Add support for -region 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1227
Patch provided by Bruno Santos
 2015-09-28 15:34:37 +01:00
Henry Weller
9f697a5b65 utilities/postProcessing/noise: Corrected documentation 
Patches provided by Bruno Santos
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1832
 2015-08-19 11:37:27 +01:00
Henry Weller
19dcf83b6a paraFoam: add support for system/blockMeshDict with the -block option 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1803
 2015-08-01 18:36:00 +01:00
Henry Weller
91e04d69c1 Resolve various unimportant warning messages from Gcc, Clang and Icpc 2015-07-19 11:31:49 +01:00
Henry Weller
c981db68c7 sampledPlane: Correct handling of coordinate system specification 
Patches provided by Timm Severin
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1764
 2015-06-25 22:04:00 +01:00
Henry Weller
ad40e110df Update headers 2015-06-24 10:45:42 +01:00
Henry Weller
5e05479e2a Use basicThermo::dictName rather than hard-coding "thermophysicalProperties" 2015-06-24 10:44:57 +01:00
Henry Weller
b73fe0d4c3 utilities/postProcessing: Automate the selection of incompressible/compressible modes 2015-06-24 10:44:02 +01:00
Henry Weller
5c6203309b timeSelector: Add support for -newTimes option 
//- Return the set of times selected based on the argList options
    //  including support for \b -newTimes in which times are selected
    //  if the file <fName> does not exist in the time directory.
    //  Also set the runTime to the first instance or the
    //  \c constant/ directory if no instances are specified or available
    static instantList select
    (
        Time& runTime,
        const argList& args,
        const word& fName
    );

This is experimental functionality and currently on test in the yPlus
post-processing utility.
 2015-06-24 10:04:29 +01:00
Henry Weller
b7cfd08fcb Update headers 2015-06-23 11:27:05 +01:00
Henry Weller
87f6977bcb Removed support for the legacy SiCortex64 architecture 2015-06-23 11:26:45 +01:00
Henry Weller
35c53a0ee8 createTurbulenceFields: Construct fields and turbulence model for every time step processed 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1749
 2015-06-16 12:49:02 +01:00
Henry
605b3ff820 streamFunction: Evaluate which coordinate plan the 2D geometry is in filter-out the normal component 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1703
 2015-05-22 22:38:39 +01:00
Henry
b5d3f85bd4 functionObjects: Upgrade to use new turbulence modeling library 2015-05-17 14:56:40 +01:00
Henry
9e015293b2 foamListTimes: Added '-rm' option to remove the selected time directories 
If -rm is specified with the -processor option the selected time
directories are removed from all the processor directories.
 2015-05-08 22:47:31 +01:00
Henry
0795ebed1f execFlowFunctionObjects: Update handling of turbulence models 2015-04-25 16:31:09 +01:00
Henry
48155ba517 Pe: Create and write volScalarField in addition to the surfaceScalarField for ease of post-processing 
Update handling of turbulence models
 2015-04-25 16:29:54 +01:00
Henry
ebd85bc514 Update header 2015-04-25 15:13:15 +01:00
Henry
82c0cc5312 timeSelector: Rename option zeroTime -> withZero for consistency with the noZero option 2015-04-25 15:12:08 +01:00
Henry
aba8486680 foamListTimes: Change the default behavior to not include 0 in the list 
To include 0 use the -zeroTime option
 2015-04-25 11:49:49 +01:00
Henry
55d6b41d4b vtkPV?FoamMeshVolume: Corrected conversion of tetWedge to VTK_WEDGE 
Thanks to Bruno Santos for analysing and fixing this
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1633
 2015-03-29 20:17:45 +01:00
Henry
9cd9a9f364 ddtScheme::fvcDdtPhiCoeff: Zero ddtCorr on AMIs 
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1421
 2015-03-24 15:23:01 +00:00
Henry
1845e2014d DSMC: Rationalization and addition of mapping support 2015-02-20 17:24:14 +00:00
Henry
945c4c3d18 fluidThermo: Add compressibleTransportModel as base-class 
Needed to create generic compressible turbulence model library
 2015-02-17 17:25:26 +00:00
Henry
8628ef2fea Corrected capitalization of Doxygen documentation comments 2015-02-14 13:10:15 +00:00