Commit Graph

26134 Commits

Author SHA1 Message Date
Mark Olesen
1dafe5d393 ENH: use full scratch buffer capacity for ensight output
- improves overall buffering ability across parts
2022-11-17 14:03:25 +01:00
mattijs
225f548d2d ENH: pointHistory: cooperate with collated file format. Fixes #2636 2022-11-17 10:32:35 +00:00
mattijs
6cb8337345 BUG: faceReflecting: initialisation. Fixes #2634 2022-11-16 16:30:11 +00:00
Mark Olesen
3d81dd6277 COMP: forward declarations for uniformDimensionedFields 2022-11-16 14:14:59 +01:00
Mark Olesen
90c4ee7e12 ENH: support wmakeLnInclude of C++ template files (.tcc, .tpp, .txx)
- can be used to avoid confusion with source files

ENH: improve handling of '--' option termination (wmake scripts)
2022-11-16 13:11:40 +01:00
Kutalmış Berçin
5714a3606e Merge branch 'feature-atomic-stream' into 'develop'
Updates for ensight writing

See merge request Development/openfoam!570
2022-11-15 17:02:04 +00:00
Mark Olesen
0fabbcb404 ENH: direct ensight output of float/double
- since ensight format is always float and also always written
  component-wise, perform the double -> float narrowing when
  extracting the components.  This reduces the amount of data
  transferred between processors.

ENH: avoid vtk/ensight parallel communication of empty messages

- since ensight writes by element type (eg, tet, hex, polyhedral) the
  individual written field sections will tend to be relatively sparse.
  Skip zero-size messages, which should help reduce some of the
  synchronization bottlenecks.

ENH: use 'data chunking' when writing ensight files in parallel

- since ensight fields are written on a per-element basis, the
  corresponding segment can become rather sparsely distributed. With
  'data chunking', we attempt to get as many send/recv messages in
  before flushing the buffer for writing. This should make the
  sequential send/recv less affected by the IO time.

ENH: allow use of an external buffer when writing ensight components

STYLE: remove last vestiges of autoPtr<ensightFile> for output routines
2022-11-15 17:26:09 +01:00
Mark Olesen
5338e56c73 ENH: add support for OFstream atomic file creation (#2631)
- with ATOMIC, an intermediary file is created - eg, (fileAbc~tmp~)
  where all of the output is written to. When the stream goes out of
  scope, this intermediary file is moved/renamed to the actually
  output name - eg, (fileAbc~tmp~) -> (fileAbc).

  This adds some safety if the simulation crashes while writing the
  file, since it will the partial (corrupt) file will be left
  behind as (fileAbc~tmp~) and not as (fileAbc), which means it will
  will be treated as a backup file and not loaded again on restart.

ENH: provided enumeration for APPEND/NON_APPEND

- clearer than using bool (with comments).
  Since append mode is primarily only used by masterOFstream etc
  this change is unlikely to affect user coding.

ENH: use file atomic for ensight file creation

- avoids corrupt (truncated) files being referenced by the ensight
  case file if the simulation crashes while writing the ensight file.
2022-11-15 14:10:01 +01:00
Mark Olesen
9f7cfa9419 ENH: support libz disabling via WM_COMPILE_CONTROL (as ~libz)
- eg, for partially incomplete systems (without libz devel header)

ENH: clearer binding of dummy Pstream in OpenFOAM/Make/options

- link of dummy stub Pstream now contingent on linking libOpenFOAM as
  well. This makes the purpose slightly clearer

ENH: cleaner option naming/handling in wmake script

- allow special purpose -no-openfoam option.
  Eg, compiling test programs without OpenFOAM and Pstream libraries
  but using the rest of the wmake system.

ENH: add +openmp support into WM_COMPILE_CONTROL (#2633)

- this adds compile/link flags for openmp.
  For single-use, can also use 'wmake -openmp'.

  If both +openmp and ~openmp are specified in WM_COMPILE_CONTROL
  the ~openmp will have priority.

  This is actually done indirectly since ~openmp will set empty
  COMP_OPENMP, LINK_OPENMP internal variables, which the +openmp then
  adds to the c++FLAGS and linkexe targets (ie, won't actually add
  anything).

ENH: add +ccache or ccache=... support into WM_COMPILE_CONTROL (#2633)

- with the first version (+ccache), simply use ccache from the path
  without any extra options.

- with the second version (ccache=...), can be more specific about
  what is called.

  Using "+ccache" is identical to "ccache=ccache", but the later could
  be used in other ways. For example,

     ccache=/strange/install/path/ccache
     ccache=</path/my-tooling --option>

  Have the choice of unquoted, single or double quoted or '< >' quoted

STYLE: relocate FOAM_EXTRA_LDFLAGS in general makefile

- removes clutter for different linkers (eg, gold, mold, ldd)
  making it easier to extend for other linkers.

STYLE: protect makefile checks with 'strip' function
2022-11-15 14:00:18 +01:00
Mark Olesen
e15b103003 COMP: remove wmake rules for ARM7 (discontinued) arch 2022-11-15 14:00:18 +01:00
Mark Olesen
c2af76337e COMP: remove wmake rules for discontinued IA64 (itanium) arch 2022-11-15 14:00:18 +01:00
Mark Olesen
edc12c9ad9 COMP: remove fast-math and unsafe-math-optimizations for Fujitsu (#2564)
- was found to cause issues (snappyHexMesh specifically)
  on Fugaku. Reported by @azami
2022-11-15 14:00:18 +01:00
Mark Olesen
25e874a4f0 ENH: provide MPI native minOp, maxOp reduce multiple values
- consistent with sumOp

ENH: globalIndex with gatherNonLocal tag, and use leading dispatch tags

- useful for gather/write where the master data can be written
 separately.  Leading vs trailing dispatch tags for more similarity to
 other C++ conventions.
2022-11-15 14:00:18 +01:00
Andrew Heather
beea22b2f0 Merge branch 'feature-histogram-extension' into 'develop'
ENH: functionObjects: refactor and extend histogram

See merge request Development/openfoam!563
2022-11-14 17:34:54 +00:00
Mark Olesen
0624fb0181 STYLE: use MinMax for handling histogram ranges 2022-11-14 17:34:06 +00:00
Kutalmis Bercin
941cd7fef4 ENH: functionObjects: refactor and extend histogram
- new submodels:
  - 'equalBinWidth': groups data into bins of equal widths (previous behaviour)
  - 'unequalBinWidth': groups data into bins of unequal widths

- output files per time-step are replaced with a single output file

- silently deprecates the input entries: 'setFormat' and 'formatOptions'
2022-11-14 17:34:06 +00:00
Kutalmış Berçin
fd75d38757 Merge branch 'feature-overset-coupledPatch' into 'develop'
overset modifications: allow overset pacthes overlap, allow fringe faces walk, mass conservation update

See merge request Development/openfoam!555
2022-11-14 15:48:58 +00:00
Kutalmis Bercin
d5a973419a STYLE: overset: change massCorrection to fluxCorrection
COMP: overset: fixes for SPDP, int64
2022-11-14 15:41:40 +00:00
mattijs
ab6615c060 BUG: overset: support GAMG. Fixes #2559
Note that there is no support for using GAMG with mass-correction.
2022-11-11 10:19:52 +00:00
sergio
b48fd4f38a TUT: overset: add new tutorials and update existing tutorials 2022-11-11 10:19:51 +00:00
sergio
2a406bbb25 ENH: overset: various improvements in the framework
The improvements include:

- Allowing overset patches to be displaced outside background domain.
  - The approach does not support overlapping of multiple inset meshes
    on top of background domain.
- Allowing fringe faces to walk away from hole cells in background domain.
  - The approach was not extensibly tested with overlapping patches.
- Improving mass conservation.
- Various experimental entries are removed: massFluxInterpolation, ddtCorr.
- New entries:
  - oversetAdjustPhi: adds a flux correction outside the pressure equation.
  - massCorrection: adds an implicit correction.
2022-11-11 10:19:47 +00:00
mattijs
8c0679d25f BUG: Lagrangian: sync IO call. Fixes #2627 2022-11-09 15:31:20 +00:00
Kutalmis Bercin
a4d235af6b BUG: porousBafflePressure: read fixedJump entries - apply under-relaxation (fixes #2626) 2022-11-09 14:18:06 +00:00
mattijs
6c6c8c5008 BUG: distributedTriSurfaceMesh: locally empty surface. Fixes #2612 2022-11-09 08:55:06 +00:00
Andrew Heather
7fa4f1ef76 Merge branch 'feature-mpi-updates' into 'develop'
More consistent use of combineReduce, simpler and/or reductions

See merge request Development/openfoam!566
2022-11-08 16:48:21 +00:00
Mark Olesen
5b29ff0e42 ENH: consolidate 'formatOptions' handling for coordSetWriter/surfaceWriter
- replaced ad hoc handling of formatOptions with coordSetWriter and
  surfaceWriter helpers.

  Accompanying this change, it is now possible to specify "default"
  settings to be inherited, format-specific settings and have a
  similar layering with surface-specific overrides.

- snappyHexMesh now conforms to setFormats

  Eg,

      formatOptions
      {
          default
          {
              verbose     true;
              format      binary;
          }
          vtk
          {
              precision   10;
          }
     }

     surfaces
     {
         surf1
         {
             ...

             formatOptions
             {
                 ensight
                 {
                     scale   1000;
                 }
             }
         }
     }
2022-11-08 16:48:08 +00:00
Mark Olesen
b7592c1ee8 ENH: preserve globalIndex merge information within mergedSurf
- for later reuse with fields (for example)

ENH: use 'scheduled' for surfaceWriter field merging (#2402)

- in tests with merging fields (surfaceWriter), 'scheduled' was
  generally faster than 'nonBlocking' for scalars, minorly faster for
  vectors.
  Thus make 'scheduled' the default for the surfaceWriter but with a
  user-option to adjust as required. Previously simply relied on
  whichever default globalIndex had (currently nonBlocking).

  Reuse globalIndex information from mergedSurf instead of
  globalIndex::gatherOp to avoid an extra MPI call to gather sizes
  each time.

  These changes will not be noticable unless surface sampling is done
  very frequently (eg, every iteration) and with large core counts.
2022-11-08 16:48:08 +00:00
Mark Olesen
799d247142 ENH: PatchTools::gatherAndMerge with recovery of the globalIndex
- support globalIndex for points/faces as an output parameter,
  which allows reuse in subsequent field merge operations.

- make pointMergeMap an optional parameter. This information is not
  always required. Eg, if only using gatherAndMerge to combine faces
  but without any point fields.

ENH: make globalIndex() noexcept, add globalIndex::clear() method
2022-11-08 16:48:08 +00:00
Mark Olesen
70208a7399 ENH: use returnReduceAnd(), returnReduceOr() functions
DOC: document which MPI send/recv are associated with commType
2022-11-08 16:48:08 +00:00
Mark Olesen
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
Mark Olesen
b9c15b8585 COMP: missing linkage for ensightToFoam (ldd linker) 2022-11-08 17:13:46 +01:00
mattijs
18216a4639 BUG: zoneMotion: supply optional coeffs dict. Fixes #2630 2022-11-08 12:38:44 +00:00
Mattijs Janssens
99780bd7cd Merge branch 'feature-ensightToFoam' into 'develop'
ENH: ensightToFoam: Ensight Gold mesh converter

See merge request Development/openfoam!567
2022-11-07 21:26:37 +00:00
mattijs
5163e52974 ENH: ensightToFoam: Ensight Gold mesh converter 2022-11-07 21:22:18 +00:00
Andrew Heather
35aa6140cc Merge branch 'feature-grey-area-turbulence' into 'develop'
Integration of grey area turbulence models from Upstream CFD

See merge request Development/openfoam!560
2022-11-07 11:33:31 +00:00
Kutalmis Bercin
e510321a26 TUT: wallMountedHump: new DES tutorial 2022-11-07 10:59:18 +00:00
Kutalmis Bercin
3a4537abc9 STYLE: various simplifications and changes
BUG: DEShybrid: reintroduce e28bed59
2022-11-07 10:59:18 +00:00
Andrew Heather
493bfdbdc4 ENH: DEShybrid - code refactoring/simplification 2022-11-07 10:59:18 +00:00
Andrew Heather
32507b3251 TUT: vortexShed case - added turbulenceFields example 2022-11-07 10:59:18 +00:00
Andrew Heather
81f783286c ENH: turbulenceFields FO - added LESRegion and DES shielding function, fd 2022-11-07 10:59:18 +00:00
Andrew Heather
7db69fc22e ENH: DES models - added access function for shielding function, fd 2022-11-07 10:59:18 +00:00
Andrew Heather
9557cde880 STYLE: Minor code formatting 2022-11-07 10:59:18 +00:00
Andrew Heather
c039a09e71 ENH: DEShybrid - restored inputs for backwards compatibility 2022-11-07 10:59:17 +00:00
Andrew Heather
e0f3993045 ENH: scalar - added readOrDefault(is, defaultValue) function 2022-11-07 10:59:17 +00:00
Andrew Heather
12ba22bebf ENH: DESModel - stabilisation of Ssigma function
- Code supplied by Marian Fuchs, Upstream CFD GmbH
2022-11-07 10:59:17 +00:00
Andrew Heather
07a9ee86f3 ENH: Code refactoring 2022-11-07 10:59:17 +00:00
Andrew Heather
9563607e01 ENH: Turbulence IDDES models - added option to switch fe term in dTilda calc
Default is fe = true, yielding the original form given be Shur (2008)
2022-11-07 10:59:17 +00:00
Andrew Heather
5b1c060e9e ENH: kOmegaSSTDES - added convenience functions for RAS|LES length scales 2022-11-07 10:59:17 +00:00
Andrew Heather
53397e6f3f ENH: Added deprecation warnings for SpalartAllmaras and kOmegaSST DES variants 2022-11-07 10:59:17 +00:00
Andrew Heather
67ba5acf18 ENH: Spalart-Allmaras model - added user switch for ft2 term (default = off) 2022-11-07 10:59:17 +00:00