Commit Graph

1075 Commits

Author SHA1 Message Date
Mark Olesen
1c4e32fb6a ENH: add iterators to VectorSpace (#1265)
- this adds support for various STL operations including

    * sorting, filling, find min/max element etc.
    * for-range iteration

STYLE: use constexpr for VectorSpace rank
2019-04-04 17:14:27 +02:00
Mark Olesen
f3670521cd STYLE: use std:: qualifier on ::abort, ::exit
- consistent with use of <cstdlib> and makes for a stronger distinct
  from Foam::abort etc.
2019-04-03 20:24:30 +02:00
Mark Olesen
939144233c STYLE: adjusted wording and messages for wmake
- add an additional test for wmake pre-processing
2019-04-03 08:57:01 +02:00
Mark Olesen
89245fa796 ENH: allow space char in fileName is now configurable (#1008)
- having whitespace in fileName can be somewhat fragile since it means
  that the fileName components do not necessarily correspond to a
  'Foam::word'. But in many cases it will work provided that spaces
  are not present in the final portion of the simulation directory
  itself.

    InfoSwitches
    {
        // Allow space character in fileName (use with caution)
        allowSpaceInFileName    0;
    }

- now use doClean=true as default for fileName::validate(). Was false.

  Unlike fileName::clean() this requires no internal string rewrite
  since the characters are being copied.  Also handle any path
  separator transformations (ie, backslash => forward slash) at the
  same time. This makes it resemble the std::filesystem a bit more.
2019-04-01 16:40:22 +02:00
Mark Olesen
37819905c2 ENH: add some function support for complexField (#1247)
- operators are still incomplete, as are dimensioned fields,
  field-fields etc.

- split complexFields into separate complexField, complexVectorField files
2019-03-29 11:57:02 +01:00
Mark Olesen
fcba64913a ENH: conversion and function improvements for complex (#1247)
- add construction from and conversion to std::complex, which allows
  easier wrapping of functions

- add Foam:: functions for complex versions of sin, cos, ...
2019-03-29 11:03:48 +01:00
Mark Olesen
1788bce0a2 ENH: changed definition of complex::one (#1247)
- was historically defined as (1 1), but it is more consistent with
  the concept of one to have a real component only.

  Now defined as (1 0):  1+0i

STYLE: remove obscure '!' operator for complex conjugate

- either use the member function or the '~' operator
2019-03-27 08:24:03 +01:00
Mark Olesen
a1999bc92c ENH: additional construct/assignment methods for complex (#1247)
- construct/assign from Zero
2019-03-25 15:17:58 +01:00
mattijs
a33f1787b7 ENH: globalIndex: helper function to get remote values 2019-03-21 17:55:05 +00:00
Mark Olesen
4995fc5997 ENH: add findCell for PDRblockMesh 2019-03-14 16:24:20 +01:00
Mark Olesen
cdb36e08e9 COMP: provision for non-existence of bessel functions
- These are not defined in the C++ standard for cmath, so allow for
  compilation without them. Will need to provide replacements in the
  future or rework.
2019-03-15 11:19:15 +01:00
Mark Olesen
487877377d ENH: reorganize regular expressions and add C++11 regex support
- new regExpCxx wrapper for C++11 regex support with drop-in
  compatibility with existing code.

- regExpPosix (was regExp), for future phase out in favour of regExpCxx.

- The regExp header will continue to be used for defining an
  appropriate typedef corresponding to the preferred implementation.
2019-03-14 13:24:23 +01:00
Mark Olesen
9149b3579a ENH: PtrList and PtrListOps improvements
- PtrDynList support for move append list:
  can be used to concatenate pointer lists into a single one

- include resize in PtrDynList squeezeNull as being a natural
  combination

- support sorting operations for pointer lists (PtrListOps)
2019-03-13 10:53:28 +01:00
Mark Olesen
773ec00d4b ENH: improved consistency of surface writers (#1232)
- remove writeGeometry() in favour of write() and make it pure virtual
  so that all writers must explicitly deal with it.

- establish proxy extension at construction time and treated as an
  invariant thereafter. This avoids potentially surprising changes in
  behaviour when writing.
2019-03-11 15:09:03 +01:00
Mark Olesen
97be0673dc ENH: additional constructors for IjkField 2019-02-27 08:01:19 +01:00
Mark Olesen
4d499d3c20 ENH: basic i-j-k Field container (#1216)
- this is a simple container for fields with i-j-k addressing.

  It does not support field operations directly, but is primarily
  intended to be used when assembling field information with i-j-k
  logic. After assembly, the field can be transferred to a regular
  field for normal operations.  Eg,

      IjkField<scalar> assemble({15, 16, 200});

      // .. fill in i-j-k fields

      Field<scalar> final(std::move(assemble));
      assemble.clear();   // be pedantic
      ...
2019-02-24 18:16:17 +01:00
Mark Olesen
e9323ecbbb STYLE: use finiteVolume in Make/options placeholder 2019-02-24 17:32:13 +01:00
Mark Olesen
84270ed667 ENH: new PDRblockMesh mesh generation utility (issue #1216)
- While a rectilinear mesh can be created with blockMesh, not every mesh
  created with blockMesh will satisfy the requirements for being a
  rectilinear mesh.

  This alternative to blockMesh uses a single block that is aligned
  with the xy-z directions and specifications of the control points,
  mesh divisions and expansion ratios. For example,

    x
    {
        points  ( -13.28 -0.10 6.0 19.19 );
        nCells  (  10  12 10 );
        ratios  ( 0.2   1  5 );
    }

    y { ... }
    z { ... }

  With only one block, the boundary patch definition is simple and the
  canonical face number is used directly. For example,

    inlet
    {
        type    patch;
        faces   ( 0 );
    }
    outlet
    {
        type    patch;
        faces   ( 1 );
    }

    sides
    {
        type    patch;
        faces   ( 2 3 );
    }

    ...

- After a mesh is defined, it is trivial to retrieve mesh-related
  information such as cell-volume, cell-centres for any i-j-k location
  without an actual polyMesh.

STYLE: remove -noFunctionObjects from blockMesh

- no time loop, so function objects cannot be triggered anyhow.
2019-02-23 15:45:32 +01:00
Mark Olesen
7795adfcb4 ENH: additional PtrList constructor and memory management method
- PtrList::release() method.

  Similar to autoPtr and unique_ptr and clearer in purpose than
  using set(i,nullptr)

- Construct from List of pointers, taking ownership.

  Useful when upgrading code. Eg,

     List<polyPatch*> oldList = ...;
     PtrList<polyPatch> newList(oldList);
     ...

BUG: incorrect resizing method names (PtrDynList) in previously unused code
2019-02-22 15:55:17 +01:00
Mark Olesen
95a33c2f68 ENH: wordRes::uniq() removes all duplicates
- previously just removed duplicate literals, but now remove any
  duplicates.

- Replace previous wordHashSet implementation with a linear search
  instead. The lists are normally fairly small and mostly just have
  unique entries anyhow. This reduces the overall overhead.
2019-02-14 11:03:04 +01:00
Mark Olesen
e3e0d7c8b9 ENH: add possibility to change const reference in tmp.
- previously it was only possible to reset a pointer, but not to
  change a const-reference directly (needed a swap() to do this).
2019-02-11 18:23:06 +01:00
Mark Olesen
eaa3da72c5 ENH: extend size of NullObject for safer reinterpret cast
- previously had a single pointer/value zeros (8 bytes), this meant
  that the reinterpret cast to a List would yield a reference that
  could be unsafe under certain conditions.

  Eg,
     const labelList& myList = labelList::null();

     Info<< myList.size() << nl; // OK since size is the first parameter

     SubList<label>(myList, 0);  // Unsafe

  The SubList usage is unsafe since it passes in pointer and size into
  the underlying UList. However, the pointer from the labelList::null()
  will be whatever happens to be around in memory immediately after the
  NullObject singleton. This is mostly not a problem if the List size
  is always checked, but does mean that the data pointer is rather
  dubious.

- Increase the size of the nullObject singleton to 32 bytes of zeros
  to ensure that most reinterpret casting will not result in objects
  that reference arbitrary memory.

  The 32-byte data size is rather arbitrary, but covers most basic
  containers.
2019-02-07 11:13:13 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
Mark Olesen
9a7029004c ENH: minMax, minMaxMag as functions and field functions
- Global functions are unary or combining binary functions, which are
  defined in MinMax.H (MinMaxOps.H).

  There are also global reduction functions (gMinMax, gMinMaxMag)
  as well as supporting 'Op' classes:

  - minMaxOp, minMaxEqOp, minMaxMagOp, minMaxMagEqOp

  Since the result of the functions represents a content reduction
  into a single MinMax<T> value (a min/max pair), field operations
  returning a field simply do not make sense.

- Implemented for lists, fields, field-fields, DimensionedField,
  GeometricField (parallel reducing, with boundaries).

- Since the minMax evaluates during its operation, this makes it more
  efficient for cases where both min/max values are required since it
  avoids looping twice through the data.

  * Changed GeometricField writeMinMax accordingly.

ENH: clip as field function

- clipping provides a more efficient, single-pass operation to apply
  lower/upper limits on single or multiple values.

  Examples,

    scalarMinMax limiter(0, 1);

    limiter.clip(value)

       -> returns a const-ref to the value if within the range, or else
          returns the appropriate lower/upper limit

    limiter.inplaceClip(value)

       -> Modifies the value if necessary to be within lower/upper limit

  Function calls

    clip(value, limiter)

       -> returns a copy after applying lower/upper limit

    clip(values, limiter)

       -> returns a tmp<Field> of clipped values
2019-01-10 09:43:23 +01:00
Mark Olesen
3316055267 ENH: minor adjustments to Switch
- assignment operators return a value, for consistency with bool.

- partial revert of DEFAULT_TRUE, DEFAULT_FALSE, to reduce complexity.
2019-01-29 09:38:09 +01:00
Mark Olesen
a3f960e36f ENH: add 'default' as possible Switch state, but not as input/output
- in some circumstances we need to pass a bool value upwards to the
  caller and know if the true/false value was set based on real input
  or is a default value.

  Eg, in the object::read() we might normally have

     enabled_(dict.readIfPresent(key, true));

  but would lose information about why the value is true/false.

  We can change that by using

     enabled_(dict.readIfPresent<Switch>(key, Switch::DEFAULT_ON));

  After which we can use this information is testing.

      if
      (
          child.enabled().nonDefault()
        ? child.enabled()
        : parent.enabled()
      )
      { ... }

   And thus enable output if the parent requested it explicitly or by
   default and it has not been explicitly disabled in the child.

  No difference when testing as a bool and the text representation
  of DEFAULT_ON / DEFAULT_OFF will simply be "true" / "false".

ENH: add construction of Switch from dictionary (similar to Enum)
2019-01-28 23:18:21 +01:00
Mark Olesen
87523acad3 ENH: add ListOps find/found accepting a unary predicate (#1182)
- can also be used for other purposes.
  Eg,

      if (ListOps::found(list, matcher))
      {
         ...
      }

  vs.

      if (!findStrings(matcher, list).empty())
      {
         ...
      }
2019-01-25 11:45:03 +01:00
Mark Olesen
5ec44cd51f ENH: add range check on findIndices (#1182)
- add compile-time detection of deprecated findIndex() function

- replace occurrences of findIndex() with the equivalent container
  method
2019-01-25 10:47:34 +01:00
Mark Olesen
856f45a910 Merge remote-tracking branch 'origin/master' into develop 2019-01-23 21:27:03 +01:00
Mark Olesen
a5cc0ffcad STYLE: use const reference for caught exceptions 2019-01-23 09:03:06 +01:00
Mark Olesen
8f8a4dc682 ENH: add foamDictionary -precision option (issue #1177)
- since foamDictionary doesn't use system/controlDict it will use the
  standard default precision. The '-precision' option allows adjusting
  that value.
2019-01-22 15:11:28 +01:00
Mark Olesen
73e89f9332 ENH: add UPtrList method to squeeze out (remove) null pointers
- moves any nullptr to the end of the list where they can be
  eliminated in a second step with resize()
2019-01-21 09:51:02 +01:00
Mark Olesen
ed94a2714d STYLE: use HashTable iterator 'val()' method instead of 'object()' 2019-01-18 16:26:50 +01:00
Mark Olesen
8a391b79b5 ENH: MinMax class for handling value ranges 2019-01-14 10:00:32 +01:00
Mark Olesen
00cbf5564b STYLE: add deprecated message to NamedEnum constructor
- this class really should not be used at all anymore.
  Add a message so people recognize can find any occurrences.
2019-01-10 14:49:18 +01:00
Mark Olesen
8071020518 ENH: make List output compile-time configurable (#1160)
- introduced a ListPolicy details to make the transition between
  a short list (space separated) and a long list (newline separated)
  more configurable.

  We suppress line breaks for commonly used types that often have
  short content: (word, wordRes, keyType).
2019-01-10 14:24:11 +01:00
Andrew Heather
29315f4644 DEP: Deprecated the ensightFoamReader 2019-01-17 09:35:04 +00:00
Mark Olesen
000f704e08 ENH: FixedList empty(), size(), max_size() now constexpr static (#1160)
- this allows their use as templates parameters
2019-01-10 09:35:41 +01:00
Mark Olesen
7720b59066 ENH: add dimensionSet provisioning for a dimensioned clip() method
- use file-local function to reduce some code clutter
2019-01-09 23:44:17 +01:00
Mark Olesen
cf8d500f8c ENH: export FOAM_API in dictionary (issue #1158)
- uses the value of foamVersion::api, which should be reliable.
2019-01-07 19:04:50 +01:00
Mark Olesen
2067014079 ENH: minor consistency improvements for bounding box
- a valid() method (same as !empty() call) for consistency with other
  containers and data types

- a centre() method (same as midpoint() method) for consistency with
  other OpenFOAM geometric entities
2019-01-09 09:32:23 +01:00
Mark Olesen
a0a7da2edd ENH: Pair, Tuple2 improvements (#1160)
- move constructors, construct from std::pair
- input/output of std::pair

Makes it easier when using data structures for other codes.
2019-01-08 22:16:41 +01:00
Mark Olesen
907dd6d49f STYLE: consistent indentation and template parameters for FixedList 2019-01-08 21:50:12 +01:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
Mark Olesen
22b659d7c0 ENH: export FOAM_API in dictionary (issue #1158)
- uses the value of foamVersion::api, which should be reliable.
2019-01-07 19:04:50 +01:00
Mark Olesen
0dbd05daa4 STYLE: minor adjustment of test case 2019-01-03 19:16:13 +01:00
Mark Olesen
6a448016aa ENH: additional read guards for dimensionedType. input consistency (#762, #1148)
- provide a lookupOrDefault constructor form, since this is a fairly
  commonly used requirement and simplifies the calling sequence.

  Before

      dimensionedScalar rhoMax
      (
          dimensionedScalar::lookupOrDefault
          (
              "rhoMax",
              pimple.dict(),
              dimDensity,
              GREAT
          )
     );

  After

      dimensionedScalar rhoMax("rhoMax", dimDensity, GREAT, pimple.dict());

- read, readIfPresent methods with alternative lookup names.

- Mark the Istream related constructors with compile-time deprecated
  warnings.

BUG: read, readIfPresent methods not handling optional dimensions (#1148)
2019-01-03 13:34:11 +01:00
Mark Olesen
af310075a0 ENH: handle dimensions in dimensioned<Type>::lookupOrAddToDict (#1116) 2019-01-03 01:30:27 +01:00
Mark Olesen
3560884abe ENH: allow direct testing of HashTable iterator as a bool
- can be used as a more natural test on the iterator.
  For example, with

     HashTable<..> table;
     auto iter = table.find(...);

  Following are now all equivalent:

    1.  if (iter != table.end()) ...
    2.  if (iter.found()) ...
    3.  if (iter) ...
2018-12-20 18:03:16 +01:00
Mark Olesen
08335beb6f ENH: add get() accessor to tmp classes
- similar to autoPtr and unique_ptr. Returns the pointer value without
  any checks. This provides a simple way for use to use either
  an autoPtr or a tmp for local memory management without accidentally
  stealing the pointer.

  Eg,

     volVectorField* ptr;
     tmp<volVectorField> tempField;

     if (someField.valid())
     {
         ptr = someField.get();
     }
     else
     {
         tempField.reset(new volVectorField(....));
         ptr = tmpField.get();
     }

     const volVectorField& withField = *ptr;

STYLE: make more tmp methods noexcept
2018-12-20 17:29:51 +01:00
Andrew Heather
9231534efa STYLE: Updating version to v1812 2018-12-19 18:07:52 +00:00
Mark Olesen
455c8ef540 ENH: simplify use of case-relative paths
- provide relativePath() for argList and for Time.
  These are relative to the case globalPath().
  Eg,

     Info<< "output: " << runTime.relativePath(outputFile) << nl;
2018-12-15 13:26:55 +01:00
Mark Olesen
2617c326d8 ENH: extend fileName::relative() method
- optionally replace stripped parent directory with the \<case\> shortcut

    "/this/path/and/subdirs/name"

    relative("/this/path")        -> "and/subdirs/name"
    relative("/this/path", true)  -> "\<case\>/and/subdirs/name"
2018-12-14 17:44:07 +01:00
Mark Olesen
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
Mark Olesen
5d9e278e92 ENH: consolidate handling of mandatory/optional command arguments
- for some special cases we wish to mark command-line arguments as
  being optional, in order to do our own treatment. For example,
  when an arbitrary number of arguments should be allowed.

  Now tag this situation with argList::noMandatoryArgs().
  The argList::argsMandatory() query can then be used in any further
  logic, including the standard default argument checking.

- with the new default check, can consolidate the special-purpose

      "setRootCaseNonMandatoryArgs.H"

  into the regular

      "setRootCase.H"

- revert to a simple "setRootCase.H" and move all the listing related
  bits to a "setRootCaseLists.H" file. This leaves the information
  available for solvers, or whoever else wishes, without being
  introduced everywhere.

- add include guards and scoping to the listing files and rename to
  something less generic.

     listOptions.H -> setRootCaseListOptions.H
     listOutput.H  -> setRootCaseListOutput.H
2018-12-13 01:45:09 +01:00
Mark Olesen
172c36c29a ENH: support search modes for etcFiles()
- similar to the foamEtcFile script -mode=... option, the specific
  search location (user/group/other) can now also specified for
  string expansions and as a numerical value for etcFile()

  For example, if searching for group or other (project) controlDict,
  but not wishing to see the user controlDict:

    1.  foamEtcFile -mode=go controlDict

    2.  fileName dictFile("<etc:go>/controlDict");
        dictFile.expand();

    3.  etcFile(controlDict, false, 0077);

  The default behaviour for searching all contexts is unchanged.

    1.  foamEtcFile controlDict

    2.  fileName dictFile("<etc>/controlDict");
        dictFile.expand();

    3.  etcFile(controlDict);
2018-12-12 13:45:32 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
5e4d7386ec ENH: use foamVersion::api internally in etcFiles searching (#1010)
- prefer this to using the OPENFOAM define since this improves the
  internal consistency with the build information.

  The API information could change between builds without the
  etcFiles.C being recompiled whereas the value of
  Foam::foamVersion::api is force updated during the build (triggers
  recompilation of globals.Cver)
2018-12-08 17:42:31 +01:00
Mark Olesen
bff16a0ddc STYLE: additional comments in Test-decomposePar 2018-12-05 08:42:55 +01:00
Mark Olesen
b8c257d6ad CONFIG: adjustments to environment
- provide default WM_DIR if not already set, to improve robustness if a
  reduced environment is used

- add etc/ to WM_PROJECT_SITE search. This makes the site directory
  structure consistent with the OpenFOAM structure.
  Eg,

      WM_PROJECT_SITE/etc/..
      WM_PROJECT_SITE/bin/..
      WM_PROJECT_SITE/platforms/..

- Don't set/export WM_OSTYPE.  The default is POSIX and is properly
  defaulted throughout, including in CMakeLists-OpenFOAM.txt (also for
  Catalyst)
2018-12-03 09:50:48 +01:00
Mark Olesen
4b7e11fc8b COMP: adjust headers for more detailed build info in the future (issue #1010)
- this splits a larger changeset for a gradual implementation
2018-11-29 21:01:01 +01:00
Mark Olesen
b81420e524 ENH: additional variants of IOobjectList findObject()
- cfindObject() for const pointer access.

- getObject() for mutable non-const pointer access, similar to the
     objectRegistry::getObjectPtr()

- cfindObject(), findObject(), getObject() with template type access
  to also check the headerClassName.

  For example,

      cfindObject("U")  ->  good
      cfindObject<volVectorField>("U") -> good
      cfindObject<volScalarField>("U") -> nullptr

  This allows inversion of looping logic.

    1) Obtain the names for a particular Type

       for (const word& objName : objs.sortedNames<Type>())
       {
           const IOobject* io = objs[objName];
           ...
       }

    2) Use previously obtained names and apply to a particular Type

       for (const word& objName : someListOfNames)
       {
           const IOobject* io = objs.cfindObject<Type>(objName);
           if (io)
           {
               ...
           }
       }
2018-11-28 11:28:38 +01:00
Mark Olesen
f78aa8e342 ENH: added Ostream fill() methods and corresponding IOmanip setfill()
- useful when generating formatted output such as tables.
2018-11-25 14:17:55 +01:00
Mark Olesen
0e47b0717d ENH: vtk::seriesWriter to encapsulate writing file series (issue #926) 2018-10-02 14:06:34 +02:00
Mark Olesen
42009c168e ENH: vtk::vtmWriter for generating vtkMultiBlockDataSet (.vtm) (issue #926)
- Provides a means of accumulating file entries for generating vtm
  by accumulate blocks, datasets and writing them later.

  Only a single block depth is currently supported and the methods
  are kept fairly simple.
2018-10-02 12:53:01 +02:00
Mark Olesen
1456a8ca1d STYLE: emit warning about using deprecated "~OpenFOAM" expansion
- Within strings it is preferable to use the "<etc>" instead.
  Most use cases for the old "~OpenFOAM" expansion have been obsoleted
  by the #includeEtc directive.
2018-11-23 13:12:33 +01:00
Mark Olesen
ac03307258 ENH: improve consistency in version handling (issue #1010)
- use std::string instead of c-string for the string constants

- centralize some definitions of resources into foamVersion.H

  Now expose some of the hard-coded values used in foamEtcFiles()
  so that they can be known or even overridden as required.

  Relocate to src/OpenFOAM/include as a constant location.
2018-11-23 11:08:36 +01:00
Mark Olesen
45d5d7bbc1 COMP: add minimal test application
- uses wmake, without OpenFOAM libraries.

  The application and libray serve as a minimal test case for wmake,
  but can also be used to generate a minimal library/executable pair
  target for testing of packaging etc.
2018-11-23 00:21:10 +01:00
Mark Olesen
083e9e9665 ENH: isolate version information in foamVersion names instead of globals
- For compatibility, access to the old global names is provided via
  macros
        #define FOAMversion     foamVersion::version
        #define FOAMbuild       foamVersion::build
        #define FOAMbuildArch   foamVersion::buildArch

- this isolation makes it easier to provide additional scoped methods
  for dealing with version related information.  Eg, printBuildInfo()
2018-11-22 11:50:24 +01:00
Mark Olesen
5a9a2935ad ENH: modernize code in dimensionSet, dimensionSets
- 'unfriend' operators on dimensionSet, since they operate without
  requiring access to non-public members.

- add missing invTransform() function for dimensionSet.

- make inv(const dimensionSet&) available as
  operator~(const dimensionSet&), which can be used instead
  of (dimless/ds).
2018-11-20 18:16:17 +01:00
Mark Olesen
72c4b3186b ENH: added dimensionedType::writeEntry method
- writing of dictionary entry with the name of the dimensionedType
  suppressed if it is identical to the keyword.
  This corresponds to the input requirements.
2018-11-20 16:26:44 +01:00
Mark Olesen
dd87c98393 ENH: add read guard for dimensionedType constructors (#762)
- deprecate dimensionedType constructors using an Istream in favour of
  versions accepting a keyword and a dictionary.

  Dictionary entries are almost the exclusive means of read
  constructing a dimensionedType. By construct from the dictionary
  entry instead of doing a lookup() first, we can detect possible
  input errors such as too many tokens as a result of a input syntax
  error.

  Constructing a dimensionedType from a dictionary entry now has
  two forms.

  1.  dimensionedType(key, dims, dict);

      This is the constructor that will normally be used.

      It accepts entries with optional leading names and/or
      dimensions. If the entry contains dimensions, they are
      verified against the expected dimensions and an IOError is
      raised if they do not correspond. On conclusion, checks the
      token stream for any trailing rubbish.

  2.  dimensionedType(key, dict);

      This constructor is used less frequently.

      Similar to the previous description, except that it is initially
      dimensionless. If entry contains dimensions, they are used
      without further verification. The constructor also includes a
      token stream check.

      This constructor is useful when the dimensions are entirely
      defined from the dictionary input, but also when handling
      transition code where the input dimensions are not obvious from
      the source.

      This constructor can also be handy when obtaining values from
      a dictionary without needing to worry about the input dimensions.
      For example,

         Info<< "rho: " << dimensionedScalar("rho", dict).value() << nl;

      This will accept a large range of inputs without hassle.

ENH: consistent handling of dimensionedType for inputs (#1083)

BUG: incorrect Omega dimensions (fixes #2084)
2018-11-20 15:14:10 +01:00
Mark Olesen
4bf4b89af4 ENH: support scalar predicates and lists of scalar predicates (#1056) 2018-11-13 14:12:53 +01:00
Mark Olesen
1883a872a1 STYLE: adds comments in empty Make/options files
- easier when making modifications

STYLE: spelling in topoSetSource comments
2018-11-13 15:21:13 +01:00
Mark Olesen
8752120ad5 COMP: use hard-coded values for fieldTypes (issue #1068)
- this seems to be the only reliable means of obtaining the values.

  Using typeName_() yields the wrong value.

  Using the typeName causes initialization issues
  (segfault when executing on some systems).
2018-11-12 16:39:55 +01:00
Mark Olesen
90dd4b30cd TUT: syntax typo (#1059) 2018-11-12 13:59:38 +01:00
Mark Olesen
9bc61e5f41 ENH: improve IOobjectList name filtering
- support name filtering by class based on <Type> or predicates.
  Eg,

      objects.sortedNames<volScalarField>(namePattern);
  vs  objects.sortedNames(volScalarField::typeName, namePattern);

  These can also be used directly for untyped name matching.
  Eg,
      objects.sortedNames<void>(namePattern);

  Can also use a predicate:

      objects.sortedNames(wordRe("vol.*Field"), namePattern);
      objects.sortedNames
      (
          [](const word& clsName){ return clsName.startsWith("vol"); },
          namePattern
      );
2018-11-12 08:55:45 +01:00
Mark Olesen
f94d724a93 ENH: add objectRegistry::count() methods
- can be useful for obtaining information about number of fields.
  Eg,

       nScalar = mesh.count<volScalarField>(wordre);
2018-11-11 19:00:54 +01:00
Mark Olesen
4965ea4988 ENH: simplify/extend objectRegistry code with templated predicates
- replace explicit use of wordRe, wordRes, wordHashSet as filters
  with a MatchPredicate.

- support filtering by class based on <Type> or predicates
2018-11-10 17:20:32 +01:00
Mark Olesen
faaa93fdb5 ENH: add IOobjectList::findObject() method
- naming similar to objectRegistry, with unambiguous resolution.
  The lookup() methods have different return types depending on the
  calling parameter.

STYLE: use IOobjectListTemplates.C for implementations

- previously included as local definition within IOobjectList.C,
  but will be adding more templated methods soon.

- adjust parameters (eg, matchName instead of matcher) to show their
  function

ENH: handle objectRegistry::names<void>(...)

- this is equivalent to no Type restriction, and can be used when
  filtering names. Eg,

     obr.names<void>(wordRe..);
2018-11-09 21:57:55 +01:00
Mark Olesen
91cfe4c271 ENH: add wordRes::matching() method
- returns indices of matching entries.
2018-11-09 21:21:15 +01:00
Mark Olesen
6f3471d5fb STYLE: protect and comment test of illegal access (#1066) 2018-11-08 14:46:35 +01:00
Mattijs Janssens
c20b12b62f Feature patch function1 2018-10-29 09:44:31 +00:00
Mark Olesen
07dafe7b0b STYLE: use range-for when looping dictionary entries.
- as part of the cleanup of dictionary access methods (c6520033c9)
  made the dictionary class single inheritance from IDLList<entry>.

  This eliminates any ambiguities for iterators and allows
  for simple use of range-for looping.

  Eg,
      for (const entry& e : topDict))
      {
          Info<< "entry:" << e.keyword() << " is dict:" << e.isDict() << nl;
      }

   vs

      forAllConstIter(dictionary, topDict, iter))
      {
          Info<< "entry:" << iter().keyword()
              << " is dict:" << iter().isDict() << nl;
      }
2018-10-19 13:08:24 +02:00
Mark Olesen
3b74512231 ENH: cleanup of Enum class
- more dictionary-like methods, enforce keyType::LITERAL for all
  lookups to avoid any spurious keyword matching.

- new readEntry, readIfPresent methods

- The get() method replaces the now deprecate lookup() method.

- Deprecate lookupOrFailsafe()
  Failsafe behaviour is now an optional parameter for lookupOrDefault,
  which makes it easier to tailor behaviour at runtime.

- output of the names is now always flatted without line-breaks.
  Thus,

     os << flatOutput(someEnumNames.names()) << nl;
     os << someEnumNames << nl;

  both generate the same output.

- Constructor now uses C-string (const char*) directly instead of
  Foam::word in its initializer_list.

- Remove special enum + initializer_list constructor form since
  it can create unbounded lookup indices.

- Removd old hasEnum, hasName forms that were provided during initial
  transition from NamedEnum.

- Added static_assert on Enum contents to restrict to enum or
  integral values.  Should not likely be using this class to enumerate
  other things since it internally uses an 'int' for its values.

  Changed volumeType accordingly to enumerate on its type (enum),
  not the class itself.
2018-10-18 12:57:32 +02:00
Mark Olesen
e0255cfff2 ENH: add compareOp for three-way comparison
- similar to the \c <=> operator in C++20.
  Primarily for use when defining cascaded sort function objects.
2018-10-17 09:29:28 +02:00
Mark Olesen
8b569b16d1 STYLE: logical ops return bool (issue #1043)
- these currently only with bool parameters, but the return value should
  nonetheless always be a bool value:

      andOp(), orOp(), lessOp(), lessEqOp(), greaterOp(), greaterEqOp()

- renamed the unused eqEqOp() to equalOp() for naming consistency with
  the equal() global function.

ENH: equalOp() specialization for scalars

- function object version of the equal() function.
  The default constructor uses the same tolerance (VSMALL),
  but can also supply an alternative tolerance on construction.
2018-10-17 07:59:26 +02:00
Mark Olesen
0a0fee88a0 STYLE: update fileName docs and minor code cleanup 2018-10-16 23:03:38 +02:00
Mark Olesen
77017e58f4 ENH: support token stream checking to entry (issue #762)
- Eg,
    scalar val(-GREAT);

    const entry* eptr = dict.findEntry(k);

    if (eptr)
    {
        val = eptr.get<scalar>();

        // Or
        eptr.readEntry(val);
    }
2018-10-16 11:13:35 +02:00
Mark Olesen
7864672c78 ENH: make cwd() behaviour user-adjustable (issue #1007)
- with the 'cwd' optimization switch it is possible to select the
  preferred behaviour for the cwd() function.

  A value of 0 causes cwd() to return the physical directory,
  which is what getcwd() and `pwd -P` return.
  Until now, this was always the standard behaviour.

  With a value of 1, cwd() instead returns the logical directory,
  which what $PWD contains and `pwd -L` returns.
  If any of the sanity checks fail (eg, PWD points to something other
  than ".", etc), a warning is emitted and the physical cwd() is
  returned instead.

  Apart from the optical difference in the output, this additional
  control helps workaround file systems with whitespace or other
  characters in the directory that normally cause OpenFOAM to balk.
  Using a cleaner symlink elsewhere should skirt this issue.

  Eg,
      cd $HOME
      ln -s "/mounted volume/user/workdir"  workdir
      cd workdir
      # start working with OpenFOAM
2018-10-16 01:30:44 +02:00
Mark Olesen
c6520033c9 ENH: rationalize dictionary access methods
- use keyType::option enum to consolidate searching options.
  These enumeration names should be more intuitive to use
  and improve code readability.

    Eg,   lookupEntry(key, keyType::REGEX);
    vs    lookupEntry(key, false, true);

  or

    Eg,   lookupEntry(key, keyType::LITERAL_RECURSIVE);
    vs    lookupEntry(key, true, false);

- new findEntry(), findDict(), findScoped() methods with consolidated
  search options for shorter naming and access names more closely
  aligned with other components. Behave simliarly to the
  methods lookupEntryPtr(), subDictPtr(), lookupScopedEntryPtr(),
  respectively. Default search parameters consistent with lookupEntry().

    Eg, const entry* e = dict.findEntry(key);
    vs  const entry* e = dict.lookupEntryPtr(key, false, true);

- added '*' and '->' dereference operators to dictionary searchers.
2018-10-15 16:16:12 +02:00
Mark Olesen
8eddcc072a ENH: avoid readScalar, readLabel etc from dictionary (#762, #1033)
- use the dictionary 'get' methods instead of readScalar for
  additional checking

     Unchecked:  readScalar(dict.lookup("key"));
     Checked:    dict.get<scalar>("key");

- In templated classes that also inherit from a dictionary, an additional
  'template' keyword will be required. Eg,

     this->coeffsDict().template get<scalar>("key");

  For this common use case, the predefined getXXX shortcuts may be
  useful. Eg,

     this->coeffsDict().getScalar("key");
2018-10-12 08:14:47 +02:00
Mattijs Janssens
fdf19d67a4 Merge branch 'feature-coordinateSystem' into 'develop'
coordinate system improvements

See merge request Development/OpenFOAM-plus!211
2018-10-11 16:32:03 +01:00
Mark Olesen
a77ab5d4eb STYLE: relocate distributed flag into ParRunControl
- adjust member order in TimePaths to better packing
2018-10-11 09:12:01 +02:00
Mark Olesen
f7c85b034b STYLE: clearer handling of argList -case internals (issue #1037) 2018-10-11 08:32:43 +02:00
Mark Olesen
2cd2732fed ENH: avoid change when setting UPtrList twice (issue #1035)
UPtrList::set(const label i, T* ptr);

No-op if the new pointer value is identical to the current content.
This avoid memory management issues.
2018-10-09 08:27:50 +02:00
Mark Olesen
3b77493abc ENH: wordRes matcher method that distinguishes literal vs. regex
- useful for customizing the behaviour of white/black lists depending
  on the type of the match.
2018-10-07 18:30:33 +02:00
Mark Olesen
501326b27a ENH: additional constructor and methods for regionProperties
- can now construct with READ_IF_PRESENT and use count() to determine
  if it was loaded. names() and sortedNames() for a collected overview.
2018-10-01 16:01:02 +02:00
Mark Olesen
8548009eee ENH: generalize instant to be templated, movable, etc
- allows reuse for other purposes
2018-10-03 14:05:45 +02:00
Mark Olesen
6c91048e8b ENH: fileName hasPath(), removePath() methods
- improved move constructors/assignments for fileName, string, etc
2018-10-03 14:05:45 +02:00
Mark Olesen
6697bb4735 ENH: improve, simplify, rationalize coordinate system handling (issue #863)
Previously the coordinate system functionality was split between
coordinateSystem and coordinateRotation. The coordinateRotation stored
the rotation tensor and handled all tensor transformations.

The functionality has now been revised and consolidated into the
coordinateSystem classes. The sole purpose of coordinateRotation
is now just to provide a selectable mechanism of how to define the
rotation tensor (eg, axis-angle, euler angles, local axes) for user
input, but after providing the appropriate rotation tensor it has
no further influence on the transformations.

--

The coordinateSystem class now contains an origin and a base rotation
tensor directly and various transformation methods.

  - The origin represents the "shift" for a local coordinate system.

  - The base rotation tensor represents the "tilt" or orientation
    of the local coordinate system in general (eg, for mapping
    positions), but may require position-dependent tensors when
    transforming vectors and tensors.

For some coordinate systems (currently the cylindrical coordinate system),
the rotation tensor required for rotating a vector or tensor is
position-dependent.

The new coordinateSystem and its derivates (cartesian, cylindrical,
indirect) now provide a uniform() method to define if the rotation
tensor is position dependent/independent.

The coordinateSystem transform and invTransform methods are now
available in two-parameter forms for obtaining position-dependent
rotation tensors. Eg,

      ... = cs.transform(globalPt, someVector);

In some cases it can be useful to use query uniform() to avoid
storage of redundant values.

      if (cs.uniform())
      {
          vector xx = cs.transform(someVector);
      }
      else
      {
          List<vector> xx = cs.transform(manyPoints, someVector);
      }

Support transform/invTransform for common data types:
   (scalar, vector, sphericalTensor, symmTensor, tensor).

====================
  Breaking Changes
====================

- These changes to coordinate systems and rotations may represent
  a breaking change for existing user coding.

- Relocating the rotation tensor into coordinateSystem itself means
  that the coordinate system 'R()' method now returns the rotation
  directly instead of the coordinateRotation. The method name 'R()'
  was chosen for consistency with other low-level entities (eg,
  quaternion).

  The following changes will be needed in coding:

      Old:  tensor rot = cs.R().R();
      New:  tensor rot = cs.R();

      Old:  cs.R().transform(...);
      New:  cs.transform(...);

  Accessing the runTime selectable coordinateRotation
  has moved to the rotation() method:

      Old:  Info<< "Rotation input: " << cs.R() << nl;
      New:  Info<< "Rotation input: " << cs.rotation() << nl;

- Naming consistency changes may also cause code to break.

      Old:  transformVector()
      New:  transformPrincipal()

  The old method name transformTensor() now simply becomes transform().

====================
  New methods
====================

For operations requiring caching of the coordinate rotations, the
'R()' method can be used with multiple input points:

       tensorField rots(cs.R(somePoints));

   and later

       Foam::transformList(rots, someVectors);

The rotation() method can also be used to change the rotation tensor
via a new coordinateRotation definition (issue #879).

The new methods transformPoint/invTransformPoint provide
transformations with an origin offset using Cartesian for both local
and global points. These can be used to determine the local position
based on the origin/rotation without interpreting it as a r-theta-z
value, for example.

================
  Input format
================

- Streamline dictionary input requirements

  * The default type is cartesian.
  * The default rotation type is the commonly used axes rotation
    specification (with e1/e2/3), which is assumed if the 'rotation'
    sub-dictionary does not exist.

    Example,

    Compact specification:

        coordinateSystem
        {
            origin  (0 0 0);
            e2      (0 1 0);
            e3      (0.5 0 0.866025);
        }

    Full specification (also accepts the longer 'coordinateRotation'
    sub-dictionary name):

        coordinateSystem
        {
            type    cartesian;
            origin  (0 0 0);

            rotation
            {
                type    axes;
                e2      (0 1 0);
                e3      (0.5 0 0.866025);
            }
        }

   This simplifies the input for many cases.

- Additional rotation specification 'none' (an identity rotation):

      coordinateSystem
      {
          origin  (0 0 0);
          rotation { type none; }
      }

- Additional rotation specification 'axisAngle', which is similar
  to the -rotate-angle option for transforming points (issue #660).
  For some cases this can be more intuitive.

  For example,

      rotation
      {
          type    axisAngle;
          axis    (0 1 0);
          angle   30;
      }
  vs.
      rotation
      {
          type    axes;
          e2      (0 1 0);
          e3      (0.5 0 0.866025);
      }

- shorter names (or older longer names) for the coordinate rotation
  specification.

     euler         EulerRotation
     starcd        STARCDRotation
     axes          axesRotation

================
  Coding Style
================
- use Foam::coordSystem namespace for categories of coordinate systems
  (cartesian, cylindrical, indirect). This reduces potential name
  clashes and makes a clearer declaration. Eg,

      coordSystem::cartesian csys_;

  The older names (eg, cartesianCS, etc) remain available via typedefs.

- added coordinateRotations namespace for better organization and
  reduce potential name clashes.
2018-10-01 13:54:10 +02:00
Mark Olesen
7d88075842 ENH: dictionary lookup with detection of zero tokens (#1033)
- the opposite problem from issue #762. Now we also test if the input
  token stream had any tokens at all.

- called by the dictionary get<> and readEntry() methods.
2018-10-05 09:56:17 +02:00
Mark Olesen
4a61042f3f ENH: add column access and other methods for Tensor
- Can now retrieve or set a column/row of a tensor.
  Either compile-time or run-time checks.

  Get
     t.col<1>();   t.col(1);
     t.row<1>();   t.row(1);

  Set
     t.col<1>(vec);   t.col(1,vec);
     t.row<1>(vec);   t.row(1,vec);

  The templated versions are compile-time checked

     t.col<3>();
     t.col<3>(vec);

  The parameter versions are run-time checked

     t.col(3);
     t.col(3,vec);

ENH: provide named access to tensor/tensor inner product as inner()
2018-09-28 11:20:31 +02:00
Mark Olesen
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
Mark Olesen
12c903bba8 ENH: define nameOp<>, typeOp<>, sizeOp<> functors (issue #1013) 2018-09-19 15:32:04 +02:00
Andrew Heather
d3812b9b69 Merge remote-tracking branch 'origin/master' into develop 2018-08-29 13:51:40 +01:00
Will Bainbridge
5e7a766159 BUG: cubicEqn, quadraticEqn: Correction to repeated roots
Also extended the cubic equation test routine and modified the error
methods so that they more accurately generate the round of error of
evaluation.

This resolves bug report https://bugs.openfoam.org/view.php?id=3015
2018-07-24 15:54:32 +01:00
Andrew Heather
6e35bcda70 ENH: Updated config for release v1806 2018-06-28 12:56:00 +01:00
Mark Olesen
be07fc9bbe STYLE: some test apps compiling into wrong location (issue #876) 2018-06-27 10:31:35 +02:00
Mark Olesen
30b4eda7a4 TUT: update some old keywords found in tutorials
- functionObjectLibs -> libs
- redirectType -> name
- change deprecated writeCompression flags types to Switch.

- cleanup some trailing ';;' from some dictionaries
2018-06-26 14:18:52 +02:00
Mark Olesen
62b83a76a4 ENH: face, triFace sign() method analogous to plane
- a quick test for which side of the face a point is located
2018-08-14 10:08:22 +02:00
Mark Olesen
b41d5ed523 STYLE: remove deprecated constraints format from tutorials 2018-07-11 17:02:40 +02:00
Mark Olesen
ae36f5f504 ENH: change argList get<> and getList<> from read<>, readList<>
- more consistent with dictionary method naming. The get<> or
  getList<> returns a value, doesn't read into a existing location.
2018-08-09 11:27:36 +02:00
Mark Olesen
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
Mark Olesen
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
Mark Olesen
822acaf6ef ENH: make indices for boundBox::add() a templated parameter
- allows use with any container with begin(), end() and where the
  "*iterator" dereference returns a label, which is used for indexing
  into the list of points.
  This container could be labelUList, bitSet, labelHashSet, etc
2018-08-07 22:23:16 +02:00
Mark Olesen
0e996431b7 STYLE: relocate STRING_QUOTE macro to macros.H 2018-08-02 16:26:25 +02:00
Mark Olesen
9be9f02a12 ENH: bitSet, PackedList copy construct a subset
Eg,
    processorPolyPatch pp = ...;

    UOPstream toNbr(pp.neighbProcNo(), pBufs);
    toNbr << PackedList<Width>(faceValues, pp.range());
2018-08-01 17:54:53 +02:00
Mark Olesen
80f4ff87dd ENH: allow use of FixedList<label,N> for bitSet construct/set/unset
- allows direct 'hashing' of fixed lists. Eg, triFace
2018-08-01 13:01:43 +02:00
Mark Olesen
35facb8208 ENH: add PackedList::unpack() method
- allows for simpler unpacking of a full list, or list range into any
  sufficiently large integral type.

  For example,
    processorPolyPatch pp = ...;

    UOPstream toNbr(pp.neighbProcNo(), pBufs);
    toNbr << faceValues.unpack<char>(pp.range());
2018-08-01 12:48:35 +02:00
Mark Olesen
215570915e ENH: explicit convert to bool operator for autoPtr
- behaves the same as the valid() method, but can be queried directly
  like a normal raw pointer and as per std::unique_ptr.
  Eg,

      autoPtr<T> ptr = ...

      if (ptr) ...
2018-07-30 14:33:22 +02:00
Bernhard Gschaider
b5f093076b STYLE: add sigFpe test 2018-07-30 12:13:42 +02:00
Mark Olesen
a5e5ba3179 ENH: add bitSet-type of methods for boolList
- test(), get(), set(), unset() with behaviour as per bitSet,
  to allow easier swapping out of boolList <-> bitSet.
2018-07-27 15:51:19 +02:00
Mark Olesen
db9cd2bc85 ENH: add IOobjectList append() method for building larger lists
- supports copy append and move append
2018-07-27 15:38:32 +02:00
Mark Olesen
fe808e24e7 ENH: add rpmToRads() convenience functions
- simplifies conversion of RPM to radians/sec for const variables
2018-07-23 22:20:26 +02:00
mattijs
423ed38986 COMP: rigidBodyDynamics: add Time& argument to make them compile 2018-07-19 18:03:10 +01:00
Mark Olesen
ca2a83d532 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-06-20 01:56:41 +02:00
Mark Olesen
8295d398aa BUG: accessing invalid coordinateRotation after move assignment (fixes #884)
- incorrect coordinateSystem clear() after the move

- add Test-coordinateSystem
2018-06-19 21:24:38 +02:00
Mark Olesen
f9fe71815a STYLE: consistent use of '= delete' for removed constructors/assignments
- make the purpose more explicit, and reduces some work for the
  compiler as well.
2018-05-30 12:03:17 +02:00
Mark Olesen
6b6b36afd3 STYLE: revert bitSet/HashSet setMany() to set() method (issue #837)
- improves backward compatibility and more naming consistency.
  Retain setMany(iter1, iter2) to avoid ambiguity with the
  PackedList::set(index, value) method.
2018-05-29 17:38:02 +02:00
Mark Olesen
d318a630b6 ENH: add directive '#sinclude' (or '#includeIfPresent' as long name)
- consistency with make and more succinct.

- reduce code duplication in findEtcFiles.
2018-05-28 13:38:03 +02:00
Mark Olesen
48d654cf19 ENH: avoid memory leaks for HashPtrTable, PtrMap insertion (issue #749)
- disallow insert() of raw pointers, since a failed insertion
  (ie, entry already existed) results in an unmanaged pointer.

  Either insert using an autoPtr, or set() with raw pointers or autoPtr.

- IOobjectList::add() now takes an autoPtr instead of an object reference

- IOobjectList::remove() now returns an autoPtr instead of a raw pointer
2018-05-17 09:56:36 +01:00
Mark Olesen
0ea44eda59 ENH: bitSet::find_first_not() method (issue #751)
- find the position of the first bit off - symmetrical with find_first()
2018-05-02 08:33:49 +02:00
Mark Olesen
dd8341f659 ENH: make format of ExecutionTime = ... output configurable (issue #788)
- controlled by the the 'printExecutionFormat' InfoSwitch in
  etc/controlDict

      // Style for "ExecutionTime = " output
      // - 0 = seconds (with trailing 's')
      // - 1 = day-hh:mm:ss

   ExecutionTime = 112135.2 s  ClockTime = 113017 s

   ExecutionTime = 1-07:08:55.20  ClockTime = 1-07:23:37

- Callable via the new Time::printExecutionTime() method,
  which also helps to reduce clutter in the applications.
  Eg,

     runTime.printExecutionTime(Info);

  vs

     Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
         << "  ClockTime = " << runTime.elapsedClockTime() << " s"
         << nl << endl;

--

ENH: return elapsedClockTime() and clockTimeIncrement as double

- previously returned as time_t, which is less portable.
2018-04-27 15:00:34 +02:00
Mark Olesen
10b69fa2b4 ENH: ListOp::inplaceMapValue using a Map<label> for the mapping.
For example, with some HashTable or Map container of models

    { model0 => 1, model1 => 4, model2 => 5, model3 => 12, model4 => 15, }

specify the remapping

    Map<label> mapper({{1, 3}, {2, 6}, {3, 12}, {5, 8}});

inplaceMapValue(mapper, models) then yields

    { model0 => 3, model1 => 4, model2 => 8, model3 => 12, model4 => 15, }

--

ENH: extend bitSet::count() to optionally count unset bits instead.

--

ENH: BitOps compatibility methods for boolList.

- These ease coding that uses a boolList instead of bitSet and use
  short-circuit logic when possible.

  Eg, when 'bitset' and 'bools' contain the same information

      bitset.count()  <->  BitOps::count(bools)
      bitset.all()    <->  BitOps::all(bools)
      bitset.any()    <->  BitOps::any(bools)
      bitset.none()   <->  BitOps::none(bools)

  These methods can then be used directly in parameters or in logic.
  Eg,

      returnReduce(bitset.any(), orOp<bool>());
      returnReduce(BitOps::any(bools), orOp<bool>());

      if (BitOps::any(bools)) ...
2018-04-27 10:43:32 +02:00
Mark Olesen
c0766ce8ea STYLE: consistent '// End namespace' markers 2018-04-27 09:51:35 +02:00
Andrew Heather
e6787bfa9a Merge branch 'feature-bitset' into 'develop'
ENH: new bitSet class and improved PackedList class (closes #751)

See merge request Development/OpenFOAM-plus!200
2018-04-25 11:39:59 +01:00
Mark Olesen
2fde6c3ab0 ENH: improve handling of mismatched brackets, forgotten ';' (issue #762)
- flags the following type of problems:

  * mismatches:

        keyword  mismatch ( set of { brackets ) in the } entry;

  * underflow (too many closing brackets:

        keyword  too many ( set of ) brackets ) in ) entry;

- a missing semi-colon

        dict
        {
           keyword  entry with missing semi-colon
        }

  will be flagged as 'underflow', since it parses through the '}' but
  did not open with it.

Max monitoring depth is 60 levels of nesting, to avoid incurring any
memory allocation.
2018-04-25 09:55:00 +02:00
Mark Olesen
672f0574e2 COMP: resolve signed/unsigned long ambiguity on Darwin 2018-04-24 13:17:22 +02:00
Andrew Heather
a230e8d408 STYLE: Correcting typos 2018-03-28 17:14:16 +01:00
Mark Olesen
ea71484efa ENH: add alternative STL ASCII parsers
- In addition to the traditional Flex-based parser, added a Ragel-based
  parser and a handwritten one.

  Some representative timings for reading 5874387 points (1958129 tris):

      Flex   Ragel   Manual
      5.2s   4.8s    6.7s         total reading time
      3.8s   3.4s    5.3s         without point merging
2018-04-16 10:20:45 +02:00
Mark Olesen
a8da75d27e STYLE: support wordRe ICASE enum
- better naming consistency with std::regex_constants::icase

- deprecate older NOCASE, but leave supported
2018-04-13 10:42:42 +02:00
Mark Olesen
5f88e4271e ENH: allow "<case>", "<system>" ... in the string expansions (issue #792)
- the expansions were previously required as slash to follow, but
  now either are possible.

    "<case>", "<case>/" both yield the same as "$FOAM_CASE" and
    will not have a trailing slash in the result. The expansion of
    "$FOAM_CASE/" will however have a trailing slash.

- adjust additional files using these expansions
2018-04-11 23:10:49 +02:00
Mark Olesen
fc5895f1df STYLE: rename toLabel, toLabelRange classes -> labelOp, labelRangeOp
- make purpose as functors _slightly_ clearer.

- base definition removed for stricter enforcement of the specialization
  requirement.
2018-04-11 22:48:03 +02:00
Mark Olesen
a9741cea79 ENH: additional text expansion shortcuts (issue #792)
Support the following expansions when they occur at the start of a
string:

    Short-form       Equivalent
    =========       ===========
      <etc>/          ~OpenFOAM/   (as per foamEtcFile)
      <case>/         $FOAM_CASE/
      <constant>/     $FOAM_CASE/constant/
      <system>/       $FOAM_CASE/system/

These can be used in fileName expansions to improve clarity and reduce
some typing

     "<constant>/reactions"   vs  "$FOAM_CASE/constant/reactions"
2018-04-10 13:41:41 +02:00
Mark Olesen
b85d0b5cb7 ENH: provide Rand48 as generator in the expected C++11 form
- this removes an OS-specific dependency (eg, drand48_r is not POSIX)
  and allows easier use of other random number generators.

  The Rand48 generator has identical behaviour and period as the
  lrand48() library routine, but holds its own seed and state
  (which makes it re-entrant) and can be combined with other
  random distributions.

  However, when using the modified form to obtain scalar values
  they will not be identical to what drand48() yields.

  This is because drand48() uses the raw 48-bit values to directly
  set the mantissa of an IEEE double where as the newer distribution
  normalizes based on the 32-bit value.

STYLE: simplify code in Random::shuffle and use Swap
2018-04-09 11:08:34 +02:00
Mark Olesen
2f86cdc712 STYLE: more consistent use of dimensioned Zero
- when constructing dimensioned fields that are to be zero-initialized,
  it is preferrable to use a form such as

      dimensionedScalar(dims, Zero)
      dimensionedVector(dims, Zero)

  rather than

      dimensionedScalar("0", dims, 0)
      dimensionedVector("zero", dims, vector::zero)

  This reduces clutter and also avoids any suggestion that the name of
  the dimensioned quantity has any influence on the field's name.

  An even shorter version is possible. Eg,

      dimensionedScalar(dims)

  but reduces the clarity of meaning.

- NB: UniformDimensionedField is an exception to these style changes
  since it does use the name of the dimensioned type (instead of the
  regIOobject).
2018-03-16 10:24:03 +01:00
Mark Olesen
5d008f7a18 ENH: improvements for PtrList, UPtrList and new PtrDynList container
- improve internal handling to permit deriving resizable containers
  (eg, PtrDynList).

- include '->' iterator dereferencing

- Only append/set non-const autoPtr references. This doesn't break
  existing code, but makes the intention more transparent.
2018-03-22 01:13:38 +01:00
Mark Olesen
6a541ccc92 COMP: avoid attempted auto-vivify with PackedBoolList []
- also ensure fewer side-effects from inplaceReorder

- provide ListOps::reorder especially for PackedList and PackedBoolList
  since they behave differently from regular lists.
2018-03-15 15:20:00 +01:00
Mark Olesen
d17bc72585 ENH: consistency of HashSet setMany(), insertMany() with packed-list version
- this also provides a better separation of the intent
  (ie, inserting a single value, or inserting multiply values)
2018-03-14 21:08:29 +01:00