Commit Graph

260 Commits

Author SHA1 Message Date
Mark Olesen
19c3875a14 CONFIG: update tcsh completion_cache to include finiteArea and cfmesh
- include bash completion for paraFoam, and provision for using
  foamEtcFile as well.
2017-12-18 14:26:49 +01:00
Andrew Heather
50d1ac15ef INT: Integration updates in preparation for merge into the develop branch 2017-09-27 09:30:59 +01:00
Hrvoje Jasak
0c64622341 Finite area port, Hrvoje Jasak
- with sphereSurfactantFoam and sphereTransport test case
2017-09-15 12:02:25 +01:00
Mark Olesen
22775693d5 STYLE: adjust comments, indentation 2017-12-17 13:14:05 +01:00
Mark Olesen
1f9bdb4b4f CONFIG: add foamConfigurePaths -kahip* options (closes #666) 2017-12-15 18:04:11 +01:00
Mark Olesen
bc8420e14f STYLE: trailing whitespace, doxygen, error messages from fileOperation 2017-12-13 17:56:34 +01:00
Mark Olesen
5947f9a337 ENH: more succinct output from command-line errors.
- unknown options or missing option values now emit a shorter message
  without the entire usage. This makes it easier to identify the errors
  and is better aligned with the behaviour of GNU system tools.

  ====
     $ simpleFoam -case
     Using: OpenFOAM-plus (see www.OpenFOAM.com)
     Build: plus-01234

     Error: option '-case' requires an argument

     See 'simpleFoam -help' for usage
  ====

- provide for reduced (-help) and full (-help-full) usage information.
  In many cases the reduced usage provided sufficient and easier
  to find the information.

- make -srcDoc an alias for -doc-source

- no warnings about option aliases for future dates.
2017-11-24 10:27:11 +01:00
Andrew Heather
6fd27353e4 STYLE: improve formatting of doxygen filter output 2017-11-10 14:53:18 +01:00
Mark Olesen
24d8c891d7 ENH: add bin/tools/foamCreateModuleInclude
- support when creating modules for OpenFOAM.
  Original source from Ivan Spisso (CINECA) modified by OpenCFD
2017-11-13 07:46:17 +01:00
Mark Olesen
590b319a78 TUT: 'restore0Dir -processors' with filtering of #include files 2017-11-04 14:59:59 +01:00
Mark Olesen
ebd922a32e ENH: support longer doxygen brief descriptions. 2017-11-04 14:26:38 +01:00
Mark Olesen
c792a9d7df TUT: script cleanup, provide cleanCase0 for commonly used operation 2017-10-12 19:20:56 +02:00
Mark Olesen
ce0868106a ENH: use bash associative array for on-the-fly completion (issue #551)
- this reduces the number of functions and allows lazy loading of
  completion options, which makes it easy to quickly add any other
  OpenFOAM application in completion.

  The generic '_of_complete_' function handles (bash) completion for
  any OpenFOAM application. On the first call for any particular
  application, it retrieves the available options from the application
  help output and adds this information to its environmental cache for
  subsequent use.

- Tcsh completion uses the same function via a bash wrapper.
  But since its wrapper is transient, the on-the-fly generation would
  be less efficient. For this case, a pre-generated completion_cache
  can be used, which is generated with

      bin/tools/foamCreateCompletionCache
2017-08-08 13:17:36 +02:00
Mark Olesen
78da7dbd7a CONFIG: additional filenames completion for bash_completion
- handles the case where we are currently completing something that
  does not appear to be an option. For example,

      foamDictionary -expanded someD[TAB]

  should complete the filename, not present more options.
2017-08-03 10:47:42 +02:00
Mark Olesen
c614110d46 ENH: improve bash completion functionality (issue #551)
- use complete -o filenames, dropped -o nospace to make it more responsive.

- restructure completion code to use a unified backend, which makes it easier
  understand, maintain and re-use.

- foamCreateBashCompletions now simply outputs to a stdout, and allows
  quick generation of completion of single applications.

- add -fileHandler completion in anticipation of future changes there.

- relocated as etc/config.s/bash_completion to prevent inadvertently
  having two versions (.com, .org) installed at the same time.
2017-07-31 15:35:40 +02:00
Mark Olesen
c50368ecc6 ENH: add trapFpe and setNaN optimisationSwitch (issue #517)
- allows configuration without an environment variable.
  For compatibility still respect FOAM_SIGFPE and FOAM_SETNAN
  env-variables

- The env-variables are now treated as true/false switch values.
  Previously there was just a check for env exists or not, but this
  can be fairly fragile for a user's environment.
2017-07-05 17:49:37 +02:00
Mark Olesen
02edc5b206 STYLE: tabs and line length in files, very dubious NULL in ensight reader.
- disable automatically upgrading copyrights in files since changes to
  not automatically imply a change in copyright. Eg, fixing a typo in
  comments, or changing a variable from 'loopI' to 'loopi' etc.
2017-06-26 13:43:05 +02:00
Mark Olesen
4971cedc2a CONFIG: cleanup bash completions in unset 2017-06-26 11:09:05 +02:00
Mark Olesen
8005e2b4a2 ENH: add cloneParallelCase function into bin/tools/RunFunctions 2017-06-22 14:45:53 +01:00
Mark Olesen
feab8e94a8 ENH: restrict aliases, completions to interactive shells
- minor cleanup of bash completion script
2017-06-21 08:09:15 +01:00
Mark Olesen
d794f599d8 ENH: added bin/tools/ change-sitedir.sh, change-userdir.sh
- can be useful with compiling additional OpenFOAM programs
  that use FOAM_USER_APPBIN, FOAM_USER_LIBBIN for their build,
  to avoid conflicts with the normal user bin/lib files.

- or to force relocation of FOAM_SITE_APPBIN, FOAM_SITE_LIBBIN
  during packaging of OpenFOAM
2017-04-07 09:10:06 +02:00
Mark Olesen
b970ba0901 ENH: minor improvements to environment
- handle sourcing bashrc with a relative path (issue #383)
- handle sourcing from bash and zsh.
  Still need manual intervention when sourcing dash, sh, or ksh.
- replace grep in etc/cshrc with sed only
- logical instead of physical path for WM_PROJECT_DIR (issue #431).
  Doesn't seem to be possible for csh/tcsh.

  * Continue using physical locations when comparing directories,
    but not for the top-level FOAM_INST_DIR, WM_PROJECT_DIR.

- relocate WM_CC, WM_CXX overrides from etc/config.*/compiler
  to etc/config.*/settings to ensure that they are left untouched
  when etc/config.sh/compiler is sourced while making third-party
  packages (eg, gcc, llvm, CGAL).

- provide fallback FOAM_TUTORIALS setting in RunFunctions

STYLE: remove "~OpenFOAM" fallback as being too rare, non-obvious
2017-03-20 08:57:12 +01:00
Mark Olesen
31555346cc Merge remote-tracking branch 'origin/master' into develop 2017-03-10 13:30:39 +01:00
Mark Olesen
973cf0397d CONFIG: provide foamConfigurePaths -mpi option
- makes it easier to switch between mpi implementations (eg, openmpi, intelmpi etc)

- add comment about compiler setting for KNL
2017-02-16 09:14:17 +01:00
Mark Olesen
957635200a ENH: build into build/ directory instead of platforms/ (issue #312)
- makes it slightly easier when packaging various binaries, or when
  building packages for installation via modules etc.
2017-02-10 20:30:15 +01:00
Mark Olesen
0067c9e369 STYLE: avoid spurious messages when cloning cases
- either (or both) of 0/, 0.orig/ may exist, so error messages about
  one of them being missing is a bit misleading
2017-02-09 13:41:48 +01:00
Andrew Heather
9e8031f285 BUG: RunFunctions - updated retrieval of nProcs to suppress warning when no system/deomposeParDict 2017-02-03 12:27:50 +00:00
Mark Olesen
b04305bb43 ENH: add small tool for listing the available EXE targets (based on git grep)
Example use

    foamGrepExeTargets           > targets-available
    foamGrepExeTargets -appbin   > targets-created

    diff -uw targets-available targets-created
2016-12-23 09:13:44 +01:00
Mark Olesen
9b1fcb0f73 ENH: increase coverage for foamConfigurePaths script
- can adjust many more values
2016-12-16 08:17:38 +01:00
Mark Olesen
3f362fd7ec CONFIG: add config files for VTK, MESA
- sometimes used for off-screen rendering.
  Only add to library-path when they are actually available
2016-12-16 08:17:29 +01:00
Andrew Heather
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
Mark Olesen
58fad3ab79 BUG: snappyHexMesh with -decomposeParDict option (issue #265)
- only occurs in combination with distributedTriSurfaceMesh in snappy.

- workaround similar to that previously used for surfaceRedistributePar
  (issue #60).

Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
2016-11-24 12:02:11 +01:00
Henry Weller
985abe023e wmake: Declare all makefiles to be specifically GNU make files 2016-11-13 15:18:09 +00:00
Mark Olesen
c7d7cbca28 BUG: foamConfigurePaths -foamInstall fails (related to issue #280)
- relied on 'export' keyword, which was removed in commit b844867112

--
ENH: foamConfigurePaths support for additional items:

    -label 32|64            specify label size
    -system name            specify 'system' compiler to be used
    -thirdParty name        specify 'ThirdParty' compiler to be used

    -boost ver              specify boost_version
    -boostArchPath dir      specify BOOST_ARCH_PATH
    -cgal ver               specify cgal_version
    -cgalArchPath dir       specify CGAL_ARCH_PATH
    -clang ver              specify clang_version for ThirdParty Clang
    -cmake ver              specify cmake_version
    -fftw ver               specify fffw_version
    -fftwArchPath dir       specify FFTW_ARCH_PATH
    -metis ver              specify METIS_VERSION
    -metisArchPath dir      specify METIS_ARCH_PATH
2016-11-09 14:38:15 +01:00
Henry Weller
9efe94407f foamLog: Added clockTime
Patch contributed by Paul Edwards, Intel
2016-11-04 14:33:47 +00:00
Mark Olesen
be2a4319bd STYLE: rationalize tutorial CleanFunctions (related to issue #279)
- include cleanup of other postProcessing directories:
  * Ensight, EnSight, ensightWrite

- don't need to remove files that cleanSnappyFiles already removed:
  * 0/cellLevel 0/pointLevel

- bundle removal of constant/ items together:
  * constant/cellDecomposition constant/polyMesh constant/tetDualMesh
2016-10-28 13:23:13 +02:00
Mark Olesen
9ab0406b47 BUG: tutorial RunFunctions ignore non-standard decomposeParDict (issue #279) 2016-10-28 13:22:19 +02:00
Andrew Heather
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
Andrew Heather
4408d47075 MRG: Merged develop branch and resolved conflicts 2016-10-19 13:33:00 +01:00
Mark Olesen
03b5d5c108 BUG: foamCleanPath problem if path contains @ (closes #264)
- Can occur with some user names, or mounted paths.
  Resolve by using '?' for the separation character.

  Since '?' is a shell-glob, it is highly unlikely to occur appear in
  filenames.  Additionally, it is not a meta-character in standard sed,
  nor in the GNU extension (which uses '\?').
2016-10-18 09:52:37 +02:00
Henry Weller
12d0707b84 foamCleanTutorials: Simplified cleaning the mesh by removing the constant/polyMesh directory 2016-10-13 15:02:32 +01:00
Mark Olesen
ba6f59a79e ENH: provide isParallel test in RunFunctions
- allows writing Allrun scripts that can be easily tested in
  serial or parallel
2016-10-07 18:00:00 +02:00
Andrew Heather
bd0e982d99 MRG: Initial commit after latest Foundation merge 2016-09-30 11:16:28 +01:00
Henry Weller
abb4d67134 pre-commit-hook: Added checks for multi-level template parameters and 'NULL'
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2267

   1. Spaced ending of multi-level template parameters are not allowed, such as:

       List<List<scalar> >

     which instead should be:

       List<List<scalar>>

   2. The use of the 'NULL' macro should be replaced by 'nullptr'
2016-09-25 18:43:50 +01:00
Andrew Heather
1fbcb686ff STYLE: Consistency updates 2016-09-23 16:52:46 +01:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
Henry Weller
0a2c2d76de RunFunctions: corrected typo $SUFFIX -> $LOG_SUFFIX
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2176
2016-08-02 21:32:38 +01:00
Mark Olesen
a95ca8293a BUG: runParallel ignores presence of log file (closes #203)
- was a small typo
2016-08-02 18:31:50 +02:00
Henry Weller
1d57269680 TDACChemistryModel: New chemistry model providing Tabulation of Dynamic Adaptive Chemistry
Provides efficient integration of complex laminar reaction chemistry,
combining the advantages of automatic dynamic specie and reaction
reduction with ISAT (in situ adaptive tabulation).  The advantages grow
as the complexity of the chemistry increases.

References:
    Contino, F., Jeanmart, H., Lucchini, T., & D’Errico, G. (2011).
    Coupling of in situ adaptive tabulation and dynamic adaptive chemistry:
    An effective method for solving combustion in engine simulations.
    Proceedings of the Combustion Institute, 33(2), 3057-3064.

    Contino, F., Lucchini, T., D'Errico, G., Duynslaegher, C.,
    Dias, V., & Jeanmart, H. (2012).
    Simulations of advanced combustion modes using detailed chemistry
    combined with tabulation and mechanism reduction techniques.
    SAE International Journal of Engines,
    5(2012-01-0145), 185-196.

    Contino, F., Foucher, F., Dagaut, P., Lucchini, T., D’Errico, G., &
    Mounaïm-Rousselle, C. (2013).
    Experimental and numerical analysis of nitric oxide effect on the
    ignition of iso-octane in a single cylinder HCCI engine.
    Combustion and Flame, 160(8), 1476-1483.

    Contino, F., Masurier, J. B., Foucher, F., Lucchini, T., D’Errico, G., &
    Dagaut, P. (2014).
    CFD simulations using the TDAC method to model iso-octane combustion
    for a large range of ozone seeding and temperature conditions
    in a single cylinder HCCI engine.
    Fuel, 137, 179-184.

Two tutorial cases are currently provided:
    + tutorials/combustion/chemFoam/ic8h18_TDAC
    + tutorials/combustion/reactingFoam/laminar/counterFlowFlame2D_GRI_TDAC

the first of which clearly demonstrates the advantage of dynamic
adaptive chemistry providing ~10x speedup,

the second demonstrates ISAT on the modest complex GRI mechanisms for
methane combustion, providing a speedup of ~4x.

More tutorials demonstrating TDAC on more complex mechanisms and cases
will be provided soon in addition to documentation for the operation and
settings of TDAC.  Also further updates to the TDAC code to improve
consistency and integration with the rest of OpenFOAM and further
optimize operation can be expected.

Original code providing all algorithms for chemistry reduction and
tabulation contributed by Francesco Contino, Tommaso Lucchini, Gianluca
D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane Backaert.

Implementation updated, optimized and integrated into OpenFOAM-dev by
Henry G. Weller, CFD Direct Ltd with the help of Francesco Contino.
2016-07-17 15:13:54 +01:00
Henry Weller
6a2a5cbd24 foamListSourceFiles: keep .orig files 2016-06-24 22:32:22 +01:00