Commit Graph

100 Commits

Author SHA1 Message Date
Mark Olesen
1310e85225 ENH: support 'get()' for retrieving argList options
- previously only had 'opt<..>()' for options, but 'get<..>()'
  provides more similarity with dictionary methods.
  The 'opt<..>()' method is retained.
2019-11-26 21:07:11 +01:00
Andrew Heather
fdf8d10ab4 Merge commit 'e9219558d7' into develop-v1906 2019-12-05 11:47:19 +00:00
OpenFOAM bot
e9219558d7 GIT: Header file updates 2019-10-31 14:48:44 +00:00
mattijs
f64125c6d9 ENH: redistributePar: handle -overwrite. Fixes #1450. 2019-10-17 13:27:55 +01:00
sergio
e3b05494f7 COMP: relocate regionProperties to meshTools 2019-09-20 14:06:30 -07:00
Mark Olesen
1d8ea9182b ENH: add basic zero-initialized constructors for particle classes
- for the most basic level construction with mesh and position only.
2019-08-02 17:23:00 +02:00
Mark Olesen
037be8dbb0 STYLE: use default constructors/destructors for base cloud classes
- use cloud::defaultName instead of "defaultCloud" string literal
2019-08-02 17:22:00 +02:00
Mark Olesen
66a100997f COMP: force dlOpen for windows application binaries (#1238)
- when windows portable executables (.exe or .dll) files are loaded,
  their dependent libraries not fully loaded. For OpenFOAM this means
  that the static constructors which are responsible for populating
  run-time selection tables are not triggered, and most of the run-time
  selectable models will simply not be available.

Possible Solution
=================

  Avoid this problem by defining an additional library symbol such as
  the following:

      extern "C" void libName_Load() {}

  in the respective library, and tag this symbol as 'unresolved' for
  the linker so that it will attempt to resolve it at run-time by
  loading the known libraries until it finds it. The link line would
  resemble the following:

      -L/some/path -llibName -ulibName_Load

  Pros:
    - Allows precise control of forced library loading

  Cons:
    - Moderately verbose adjustment of some source files (even with macro
      wrapping for the declaration).
    - Adjustment of numerous Make/options files and somewhat ad hoc
      in nature.
    - Requires additional care when implementing future libraries and/or
      applications.

  - This is the solution taken by the symscape patches (Richard Smith)

Possible Solution
=================

  Avoid this problem by simply force loading all linked libraries.
  This is done by "scraping" the information out of the respective
  Make/options file (after pre-processing) and using that to define
  the library list that will be passed to Foam::dlOpen() at run-time.

  Pros:
    - One-time (very) minimal adjustment of the sources and wmake toolchain
    - Automatically applies to future applications

  Cons:
    - Possibly larger memory footprint of application (since all dependent
      libraries are loaded).
    - Possible impact on startup time (while loading libraries)
    - More sensitive to build failures. Since the options files are
      read and modified based on the existence of the dependent
      libraries as a preprocessor step, if the libraries are initially
      unavailable for the first attempt at building the application,
      the dependencies will be inaccurate for later (successful) builds.

  - This is solution taken by the bluecape patches (Bruno Santos)

Adopted Solution
================

  The approach taken by Bruno was adopted in a modified form since
  this appears to be the most easily maintained.

Additional Notes
================

  It is always possible to solve this problem by defining a corresponding
  'libs (...)' entry in the case system/controlDict, which forces a dlOpen
  of the listed libraries. This is obviously less than ideal for large-scale
  changes, but can work to resolve an individual problem.

  The peldd utility (https://github.com/gsauthof/pe-util), which is
  also packaged as part of MXE could provide yet another alternative.
  Like ldd it can be used to determine the library dependencies of
  binaries or libraries. This information could be used to define an
  additional load layer for Windows.
2019-05-25 19:10:14 +02:00
Mark Olesen
beefee48d4 COMP: adjust compilation order with updated interdependencies
- Eg, with surface writers now in surfMesh, there are fewer libraries
  depending on conversion and sampling.

COMP: regularize linkage ordering and avoid some implicit linkage (#1238)
2019-04-28 14:44:33 +02:00
Mark Olesen
078e34746e ENH: code adjustments for updated NullObject
- can now safely use labelList::null() instead of emptyLabelList for
  return values. No special treatment required for lists.

  Possible replacements:

      if (notNull(list) && list.size())  ->  if (list.size())
      if (isNull(list) || list.empty())  ->  if (list.empty())

  The receiver may still wish to handle differently to distinguish
  between a null list and an empty list, but no additional special
  protection is required when obtaining sizes, traversing, outputting
  etc.
2019-02-07 13:04:24 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
mattijs
a6a46d23b8 BUG: polyMesh: set AUTO_WRITE flag. See #1147. 2019-01-07 17:51:47 +00:00
Mark Olesen
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
68ec561df8 STYLE: add usage notes to more utilities and solvers 2018-12-11 15:25:27 +01:00
Mark Olesen
41a03f3790 ENH: add regular expressions for reconstructPar, mapFieldsPar -fields option
- improved flexibility

- reconstruction of Lagrangian positions/fields now handled as a class
  for better modularity
2018-11-28 08:36:17 +01:00
mattijs
f4ae4f7b2c ENH: snappyHexMesh. Added leak-path detection.
Detects connections (during refinement) between
locationsInsideMesh and locationsOutsideMesh and
writes a sampledSet for postprocessing.
2018-08-02 16:39:06 +01:00
Mark Olesen
4e04c1966f ENH: use dictionary::get<word>() instead of lookup() in a few places 2018-10-19 09:11:31 +02:00
Mark Olesen
a77ab5d4eb STYLE: relocate distributed flag into ParRunControl
- adjust member order in TimePaths to better packing
2018-10-11 09:12:01 +02:00
Mark Olesen
501326b27a ENH: additional constructor and methods for regionProperties
- can now construct with READ_IF_PRESENT and use count() to determine
  if it was loaded. names() and sortedNames() for a collected overview.
2018-10-01 16:01:02 +02:00
Mark Olesen
69f6f63810 ENH: add globalPath() to argList and TimePaths
- simply combines (rootPath()/globalCaseName())
2018-09-28 15:24:59 +02:00
Mark Olesen
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
mattijs
4637e4582c ENH: redistributePar: allow nDomains 1 in decomposeParDict. Fixes #924.
Note: this removes the option to reconstruct by setting nDomains to 1.
      You now have to explicitly use -reconstruct to reconstruct.
2018-08-09 15:17:21 +01:00
Mark Olesen
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
Mark Olesen
cb919a6c41 ENH: tag some options as 'advanced' (only shown with -help-full)
General:
    * -roots, -hostRoots, -fileHandler

Specific:
    * -to <coordinateSystem> -from <coordinateSystem>

- Display -help-compat when compatibility or ignored options are available

STYLE: capitalization of options text
2018-07-31 11:54:15 +02:00
Mark Olesen
ff26b96a80 STYLE: use 'cloudObjects' instead of 'sprayObjects' 2018-07-30 13:15:38 +02:00
Mark Olesen
02ad76df4f ENH: allow wordHashSet filter for IOobjectList::names
- simplifies usage.
  Support syncPar check on names() to detect inconsistencies.

- simplify readFields, ReadFields and other routines by using these
  new methods.
2018-07-26 14:56:52 +02:00
Mark Olesen
dbe0db1d9a ENH: fvMeshSubset improvements (issue #951)
- what was previously termed 'setLargeCellSubset()' is now simply
  'setCellSubset()' and supports memory efficient interfaces.

  The new parameter ordering avoids ambiguities caused by default
  parameters.

  Old parameter order:

      setLargeCellSubset
      (
          const labelList& region,
          const label currentRegion,
          const label patchID = -1,
          const bool syncCouples = true
      );

  New parameter order:

      setCellSubset
      (
          const label regioni,
          const labelUList& regions,
          const label patchID = -1,
          const bool syncCouples = true
      );

   And without ambiguity:

      setCellSubset
      (
          const labelUList& selectedCells,
          const label patchID = -1,
          const bool syncCouples = true
      );

- support bitSet directly for specifying the selectedCells for
  memory efficiency and ease of use.

- Additional constructors to perform setCellSubset() immediately,
  which simplifies coding.

  For example,

      meshParts.set
      (
          zonei,
          new fvMeshSubset(mesh, selectedCells)
      );

  Or even

      return autoPtr<fvMeshSubset>::New(mesh, selectedCells);
2018-07-25 18:58:00 +02:00
Mark Olesen
d58c142404 ENH: use restricted dictionary lookup for utilities (issue #762)
- get<label>, get<scalar> instead of readLabel, readScalar, etc.
2018-07-24 08:08:30 +02:00
Mark Olesen
0304911921 STYLE: more consistent use of dimensioned Zero, scalar decimal points
- use scalar(0) instead of scalar(0.0) etc
2018-07-13 10:28:48 +02:00
Mark Olesen
2662042d49 ENH: improve controls for Time (issue #910)
- relocate some standard functionality to TimePaths to allow a lighter
  means of managing time directories without using the entire Time
  mechanism.

- optional enableLibs for Time construction (default is on)
  and a corresponding argList::noLibs() and "-no-libs" option

STYLE:

- mark Time::outputTime() as deprecated MAY-2016

- use pre-increment for runTime, although there is no difference in
  behaviour or performance.
2018-07-02 10:20:01 +02:00
mattijs
f51ee9a0e2 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-31 17:34:16 +01:00
Mark Olesen
f9fe71815a STYLE: consistent use of '= delete' for removed constructors/assignments
- make the purpose more explicit, and reduces some work for the
  compiler as well.
2018-05-30 12:03:17 +02:00
mattijs
d703f09d11 BUG: fileOperation: avoid par syn in uncollated. Fixes #846. 2018-05-29 12:13:13 +01:00
Mark Olesen
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
15f7260884 ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList.
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
  and ListOps::UniqueEqOp, respectively for better code isolation and
  documentation of purpose.

- relocated setValues to ListOps::setValue() with many more
  alternative selectors possible

- relocated createWithValues to ListOps::createWithValue
  for better code isolation. The default initialization value is itself
  now a default parameter, which allow for less typing.

  Negative indices in the locations to set are now silently ignored,
  which makes it possible to use an oldToNew mapping that includes
  negative indices.

- additional ListOps::createWithValue taking a single position to set,
  available both in copy assign and move assign versions.
  Since a negative index is ignored, it is possible to combine with
  the output of List::find() etc.

STYLE: changes for PackedList

- code simplication in the PackedList iterators, including dropping
  the unused operator() on iterators, which is not available in plain
  list versions either.

- improved sizing for PackedBoolList creation from a labelUList.

ENH: additional List constructors, for handling single element list.

- can assist in reducing constructor ambiguity, but can also helps
  memory optimization when creating a single element list.
  For example,

    labelListList labels(one(), identity(mesh.nFaces()));
2018-03-01 14:12:51 +01:00
Mark Olesen
87b1bbacd8 ENH: support writeLagrangianPositions in redistributePar (issue #702) 2018-02-20 15:22:47 +01:00
Mark Olesen
cbbb9753eb STYLE: consolidate positionsCompat1706 structure (issue #721) 2018-02-19 11:57:57 +01:00
Mark Olesen
345a2a42f1 ENH: simplify method names for reading argList options and arguments
- use succincter method names that more closely resemble dictionary
  and HashTable method names. This improves method name consistency
  between classes and also requires less typing effort:

    args.found(optName)        vs.  args.optionFound(optName)
    args.readIfPresent(..)     vs.  args.optionReadIfPresent(..)
    ...
    args.opt<scalar>(optName)  vs.  args.optionRead<scalar>(optName)
    args.read<scalar>(index)   vs.  args.argRead<scalar>(index)

- the older method names forms have been retained for code compatibility,
  but are now deprecated
2018-01-08 15:35:18 +01:00
Mark Olesen
e60a77442c STYLE: less verbose output of available procs in redistributePar 2017-12-22 12:50:55 +01:00
Mark Olesen
fd4782f754 COMP: adjustments for 64-bit label-size 2017-12-11 10:22:06 +01:00
Mark Olesen
cf15d299cc ENH: remove old proc-addressing when redistributing (issue #656)
- after redistribution, the old cellProcAddressing etc files are incorrect
  and potentially troublesome.
2017-12-08 12:02:09 +00:00
Mark Olesen
a59c87d5ac ENH: improved zone constructors
- constructor for empty cell/face/point Zones, with contents to be
  transferred in later.

- ZoneMesh::operator(const word&) to return existing zone or a new empty one.
2017-11-10 02:09:37 +01:00
Mark Olesen
7d7b0bfe84 STYLE: use list methods find/found instead of findIndex function 2017-10-24 19:07:34 +02:00
mattijs
6fd6610b57 ENH: redistributePar: create dummy sets on non-existing processors 2017-10-26 09:10:21 +01:00
Mark Olesen
b29f2a61b6 BUG: missing parallel-aware for metis-like decomposition 2017-10-13 12:45:28 +02:00
mattijs
dfe464dd5b BUG: redistributePar: transfer particles correctly. Fixes #605. 2017-09-28 12:36:25 +01:00
Andrew Heather
2defba00a9 ENH: Lagrangian - provided backwards compatibility for cases using the
old "positions" file form

The change to barycentric-based tracking changed the contents of the
cloud "positions" file to a new format comprising the barycentric
co-ordinates and other cell position-based info.  This broke
backwards compatibility, providing no option to restart old cases
(v1706 and earlier), and caused difficulties for dependent code, e.g.
for post-processing utilities that could only infer the contents only
after reading.

The barycentric position info is now written to a file called
"coordinates" with provision to restart old cases for which only the
"positions" file is available. Related utilities, e.g. for parallel
running and data conversion have been updated to be able to support both
file types.

To write the "positions" file by default, use set the following option
in the InfoSwitches section of the controlDict:

    writeLagrangianPositions 1;
2017-09-13 13:13:36 +01:00