Commit Graph

392 Commits

Author SHA1 Message Date
Mark Olesen
9c7aa9727a ENH: add UPstream::parRun(const bool)
- slightly neater code when disabling/restoring parallel state

  New
      const bool oldParRun = Pstream::parRun(false);
      ...
      Pstream::parRun(oldParRun);

  Old
      const bool oldParRun = Pstream::parRun();
      Pstream::parRun() = false;
      ...
      Pstream::parRun() = oldParRun;
2020-10-12 12:51:22 +02:00
Mark Olesen
1e95af4d57 STYLE: use more generic terms allow/deny for selections 2020-09-09 13:54:34 +02:00
Mark Olesen
12c91b9472 STYLE: check autoPtr as plain bool instead of valid()
- cleaner code, more similarity with unique_ptr

  Now
      if (ptr)
      if (!ptr)

  instead
      if (ptr.valid())
      if (!ptr.valid())
2020-07-16 11:39:24 +02:00
Mark Olesen
9af3f85cf9 STYLE: simplify short-circuit involving autoPtr (#1775)
- with '&&' conditions, often better to check for non-null autoPtr
  first (it is cheap)

- check as bool instead of valid() method for cleaner code, especially
  when the wrapped item itself has a valid/empty or good.
  Also when handling multiple checks.

  Now
      if (ptr && ptr->valid())
      if (ptr1 || ptr2)

  instead
      if (ptr.valid() && ptr->valid())
      if (ptr1.valid() || ptr2.valid())
2020-07-16 10:17:25 +02:00
Mark Olesen
676a904c99 BUG: flipped cellZones compat setting for foamToEnsight (#1579)
STYLE: reword text for -excludePatches
2020-06-22 11:19:34 +02:00
OpenFOAM bot
01ec92fd35 GIT: remove leading/trailing blank lines, trailing whitespace 2020-06-17 10:46:26 +02:00
Mark Olesen
31b172217c ENH: support predicate checks for argList (similar to dictionary methods)
- Favour use of argList methods that are more similar to dictionary
  method names with the aim of reducing the cognitive load.

  * Silently deprecate two-parameter get() method in favour of the
    more familiar getOrDefault.
  * Silently deprecate opt() method in favour of get()

  These may be verbosely deprecated in future versions.
2020-06-02 13:51:18 +02:00
Mark Olesen
fc26fb758d ENH: add stringListOps with whitelist/blacklist matching
- refactored from ensightMesh, foamToVTK, surfaceMeshExtract

STYLE: use wordRes matching() method instead of findString() function
2020-02-26 21:40:09 +01:00
Mark Olesen
a97628121c ENH: overhaul ensight handling (#1579)
- includes restructuring and simplification of low-level ensight part
  handling and refactor of backends to improve code reuse.

foamToEnsight
-------------

  * new cellZone support.
    This was previously only possible via a separate foamToEnsightParts
    utility that was not parallelized.

  * support for point fields.

  * `-nearCellValue` option (as per foamToVTK)

  * data indexing now uses values from the time index.
    This is consistent with the ensightWrite function object and
    can help with restarts.

  * existing ensight directories are removed, unless the -no-overwrite
    option is supplied

foamToEnsightParts
------------------
  * now redundant and removed.

ensightOutputSurface (new class)
--------------------------------
  * a lightweight wrapper for point/face references that is tailored
    for the ensightSurfaceWriter. It uses compact face/point information
    and is serial only, since this is the format requirements from the
    surfaceWriter class.

ensightMesh (revised class)
---------------------------
  * now only holds a polyMesh reference, which removes its dependency
    on finiteVolume and allows it to be relocated under fileFormats
    instead of conversion.

Removed classes: ensightParts, ensighPartFaces, ensightPartCells

- these were used by foamToEnsightParts, but not needed anymore.
2020-02-18 11:09:43 +00:00
Mark Olesen
ec3de7128c STYLE: adjust logic names for point-values in foamToVTK 2020-02-12 18:03:50 +01:00
Mark Olesen
1310e85225 ENH: support 'get()' for retrieving argList options
- previously only had 'opt<..>()' for options, but 'get<..>()'
  provides more similarity with dictionary methods.
  The 'opt<..>()' method is retained.
2019-11-26 21:07:11 +01:00
Andrew Heather
fdf8d10ab4 Merge commit 'e9219558d7' into develop-v1906 2019-12-05 11:47:19 +00:00
OpenFOAM bot
e9219558d7 GIT: Header file updates 2019-10-31 14:48:44 +00:00
sergio
e3b05494f7 COMP: relocate regionProperties to meshTools 2019-09-20 14:06:30 -07:00
Andrew Heather
15a763b931 COMP: Resolved some name clashes for #ifdef statements 2019-06-26 11:52:15 +01:00
Mark Olesen
beefee48d4 COMP: adjust compilation order with updated interdependencies
- Eg, with surface writers now in surfMesh, there are fewer libraries
  depending on conversion and sampling.

COMP: regularize linkage ordering and avoid some implicit linkage (#1238)
2019-04-28 14:44:33 +02:00
Mark Olesen
f0f4af16d2 Merge remote-tracking branch 'origin/master' into develop 2019-04-08 12:05:24 +02:00
Mark Olesen
8ab09daad0 BUG: foamToVTK writes to undecomposed case (closes #1271)
- when running in serial but within a processor directory,
  argList::globalPath() is to be used instead of Time.globalPath()
  For other cases there is no difference.
2019-04-08 11:53:50 +02:00
Mark Olesen
5d445f4ed6 ENH: suppress cell/patch/proc ids for foamToVTK (#1230)
- reduces output size, consistent with vtkWrite function object

STYLE: mark some foamToVTK options as advanced (ie, visible with -help-full)
2019-03-11 11:02:58 +01:00
Mark Olesen
fe445ac516 ENH: support VTK output of point ids
- can be useful for diagnosing mesh internals and the locations of
  decomposed cells.
2019-02-17 15:09:36 +01:00
Mark Olesen
9b8ac57e98 BUG: foamToEnsightParts reports the time value twice in log output 2019-01-30 15:41:06 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
Andrew Heather
cab94a5d0a Merge remote-tracking branch 'origin/master' into develop 2019-02-04 10:55:34 +00:00
Mark Olesen
b7fb6116c3 ENH: restructuring of ensight output files
- changed ensightOutput from a class solely comprising static methods to
  a namespace and added in sub-namespaces Detail and Serial.

  This makes it easier to "mix-in" functions at different levels.
  Refactored and combined some serial/parallel code where possible.

  The general ensightOutput namespace has now shifted to be in the
  fileFormats lib, while leaving volField outputs in the conversion lib
  and cloud outputs in the lagrangian-intermediate lib.

  The ensightCloud namespace is now simply folded into the new
  ensightOutput namespace.

  These changes clean up some code, reduce fragmentation and
  duplication and removes the previous libconversion dependency for
  sampling.

- use int for ensight nTypes constexpr

Note: issue #1176 is unaffected except for the change in file name:

   ensightOutputTemplates.C -> ensightOutputVolFieldTemplates.C
2019-01-29 15:18:17 +01:00
Mark Olesen
3b91160027 STYLE: centralize example dictionaries under etc/ (issue #1074)
- as well as being more convenient to find, this is necessary when the
  OpenFOAM installation is without sources or tutorials
2019-01-26 17:46:08 +01:00
Mark Olesen
a5cc0ffcad STYLE: use const reference for caught exceptions 2019-01-23 09:03:06 +01:00
Mark Olesen
2a1d0f36ec ENH: new foamToVTK output option -processor-fields
- write values of processor boundaries only, for diagnostic purposes.

- parallel only, and non-legacy format only
2019-01-14 17:32:07 +01:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
Andrew Heather
9231534efa STYLE: Updating version to v1812 2018-12-19 18:07:52 +00:00
Mark Olesen
e8f25b1385 BUG: foamToVTK, vtkWrite stopped by processorCyclic (closes #1135)
- they had an isType<> instead of isA<>() check
2018-12-19 13:56:20 +01:00
Mark Olesen
455c8ef540 ENH: simplify use of case-relative paths
- provide relativePath() for argList and for Time.
  These are relative to the case globalPath().
  Eg,

     Info<< "output: " << runTime.relativePath(outputFile) << nl;
2018-12-15 13:26:55 +01:00
Mark Olesen
78fd05051b STYLE: juggle some advanced/non-advanced options (foamToVTK, foamToEnsight) 2018-12-13 02:39:41 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
68ec561df8 STYLE: add usage notes to more utilities and solvers 2018-12-11 15:25:27 +01:00
Mark Olesen
51a3f4e6e4 ENH: make foamToVTK faceZone writing explicit (closes #1117)
- change previous default (convert all faceZones unless -noFaceZones
  specified) with the default behaviour to only convert face zones on
  request.

- uses the '-faceZones' option as per foamToEnsight
2018-12-10 14:35:44 +01:00
Mark Olesen
7477459186 STYLE: const-correctness on IOobject* access
- foamToEnsight, foamToEnsightParts, profiling
2018-11-28 08:00:53 +01:00
Mark Olesen
d8a55e46b6 ENH: align foamToEnsightParts internals with foamToEnsight
- add -region option and -fields filtering
2018-11-25 12:12:19 +01:00
Mark Olesen
b5432011fa ENH: improve option naming consistency in
- foamToVTK, foamToEnsight, foamToEnsightParts
2018-11-25 10:47:00 +01:00
Mark Olesen
05353da5f4 BUG: errors found in feature-vtm merge !213
- vtkWrite with moving mesh was not updated the subsets properly,
  which caused it to crash.

- foamToVTK -overwrite ignored for single region cases,
  was working for multi-region cases

- minor documentation changes
2018-11-23 14:04:07 +01:00
Mark Olesen
2b42076d58 ENH: restructuring of foamToEnsight code
- align with foamToVTK code base
2018-10-09 21:28:53 +02:00
Mark Olesen
89cca8578c ENH: rewrite of foamToVTK to include parallel output (#926)
- Default format is now XML binary (base64) instead of legacy format.
  The old -xml option is redundant and ignored.
  The new -legacy option can be used to force legacy output instead.

- Polyhedral decomposition is now off by default (old -poly is ignored).
  The option -poly-decomp forces decomposition of polyhedrals into
  primitive shapes.

- reduced memory footprint by reading and converting fields
  successively.

- Creation of symlinks to processor files is no longer required or
  desired. The old -noLinks option is ignored.

- Ignore -useTimeName option. Always number according to timeIndex.
2018-10-09 20:00:55 +02:00
Mark Olesen
4f2ec88d24 ENH: improvements to the parallelization of ensightCloud output
- communication mode is now selectable (default is blocking)

- eliminate serial-only version as being redundant
2018-10-10 10:32:14 +02:00
Mark Olesen
e4fac35d60 ENH: cleanup ensightMesh method names and handling of internal vs boundary
- this removes the old 'magically' means of suppressing the internal
  mesh in favour of specifying it directly.
2018-10-09 17:49:15 +02:00
Mark Olesen
6f06ce6e02 ENH: parallel and xml output for vtk::lagrangianWriter (issue #926) 2018-09-17 11:35:17 +02:00
Mark Olesen
0d2dbaf61b ENH: parallel and xml output for vtk topoSet writers (issue #926)
- introduce lower-level vtk::indirectPatchWriter class
2018-09-17 15:41:58 +02:00
Mark Olesen
05427217a0 ENH: improvements for foamVtkOutput, foamVtkFormatter (issue #926)
- parallel list output for foamVtkOutput

- simplified '.series' file output

- beginDataArray() method instead of openDataArray() + closeTag()
  since this seems to be the most common use anyhow.
  With an optional argument for leaving the tag open, this works the
  same as openDataArray() which may be deprecated in the future.

- begin/end methods for CellData, PointData, FieldData (commonly used)

- templating parameters for file headers, content version,
  legacy fields. This improves coding robustness and convenience of use.

- use formatter and higher-level methods for legacy output

- attribute quoting character now part of the formatter itself
  instead of as an argument for xmlAttr().
  Toggle with quoting() method.

- pair-wise processing of xml attributes, which also allows them to be
  passed as optional entries when creating an xml tag.

- xmlComment with multiple arguments
2018-09-17 08:59:03 +02:00
Mark Olesen
faaa93fdb5 ENH: add IOobjectList::findObject() method
- naming similar to objectRegistry, with unambiguous resolution.
  The lookup() methods have different return types depending on the
  calling parameter.

STYLE: use IOobjectListTemplates.C for implementations

- previously included as local definition within IOobjectList.C,
  but will be adding more templated methods soon.

- adjust parameters (eg, matchName instead of matcher) to show their
  function

ENH: handle objectRegistry::names<void>(...)

- this is equivalent to no Type restriction, and can be used when
  filtering names. Eg,

     obr.names<void>(wordRe..);
2018-11-09 21:57:55 +01:00
Mark Olesen
2fb382bf8a ENH: multiple zone selection for fvMeshSubsetProxy (#973)
- handle tmp fields in interpolate methods

- special method interpolateInternal() for creating a volume field
  with zero-gradient treatment for patches from an internal field.

  This method was previously also called interpolate(), but that
  masked the ability to subset the internal field only.

  Ensight output needs the volume field:
      uses interpolateInternal().

  VTK output has separate handling of internal and patch fields:
      uses interpolate().

ENH: added fvMeshSubset mesh() method for baseMesh or subMesh.

- simplies coding when the fvMeshSubset may or may not be in active use.

ENH: update foamToEnsight to use newer methods in wrapped form

- static interpolate functions with renaming for manual use with
  fvMeshSubset (when fvMeshSubsetProxy may be too limiting in
  functionality)
2018-10-02 17:06:44 +02:00
Mark Olesen
50baac3c45 ENH: construct string types from Istream now explicit (#1033)
- this helps for trapping unguarded dictionary lookups.
2018-11-03 20:24:34 +01:00
Mark Olesen
13778f7647 ENH: use dictionary::readEntry for detection of input errors (#762, #1033)
- instead of   dict.lookup(name) >> val;
  can use      dict.readEntry(name, val);

  for checking of input token sizes.
  This helps catch certain types of input errors:

  {

      key1 ;                // <- Missing value
      key2 1234             // <- Missing ';' terminator
      key3 val;
  }

STYLE: readIfPresent() instead of 'if found ...' in a few more places.
2018-10-05 10:15:13 +02:00