Commit Graph

883 Commits

Author SHA1 Message Date
Mark Olesen
a7e8a43f4a ENH: add writeContents() static methods for IOList etc.
- encapsulates IOListRef etc into a simpler syntax

ENH: use UList instead of refPtr for IOListRef (avoids List cast etc)
2025-04-09 15:58:29 +02:00
Mark Olesen
eb56c75c4b ENH: provide edge::sorted() static constructor
- avoids min(a,b), max(a,b) free functions (#3348)
2025-04-07 18:28:46 +02:00
Mark Olesen
e720f823d3 ENH: simplify SubStrings class/handling (remove template parameters)
- previous code used derived string iterators, but these would
  be largely ignored anyhow since the underlying std::sub_match
  str() method would just yields a std::string anyhow.

  The SubStrings::str(size_t) method wasn't used in any code, so now
  just use std::string iterators only.

  This change simplfies overall handling, since it removes an unneeded
  template dependency.
2025-03-31 16:00:07 +02:00
Mark Olesen
20b2f46315 STYLE: prefer listReduce() to using listCombineReduce() when possible
- potentially allows access into the builtin MPI operations
2025-03-06 16:54:31 +01:00
Mark Olesen
14b2302b38 COMP: remove 'special purpose' minMaxOp (#3326)
- replace with plusOp for reductions. The old use didn't necessarily work
  well with compiler resolution in all cases.
  Simplify to use plusOp (and removed the old version).
  [Does not affect very much code...]

COMP: incorrect include ordering for GeometricFieldFunctions

- header was included after the template code

REGRESSION: combineAllGather mapped to incorrect method (81fa7d08ee)

STYLE: use UPstream::commWarn(...) setter method
2025-02-24 08:57:36 +01:00
Mattijs Janssens
de5d34787c ENH: snappyHexMesh: add buffer layers before snapping 2024-12-12 16:13:32 +00:00
mattijs
ceb2151094 ENH: createPatch: allow duplicating face (for ACMI) 2024-10-24 14:04:55 +00:00
mattijs
aacd99c030 ENH: transformPoints: added comment. See #3206 2024-07-31 14:40:01 +01:00
Haakan Nilsson
a87763f6a6 ENH: transformPoints: added cylindrical to Cartesian transform 2024-06-03 17:23:37 +01:00
Mark Olesen
dbfd1f90b1 ENH: add single-time handling to timeSelector
- the timeSelector is often used to select single or multiple times
  (eg, for post-processing). However, there are a few applications
  where only a *single* time should be selected and set.

  These are now covered by this type of use:

      timeSelector::addOptions_singleTime();  // Single-time options
      ...
      // Allow override of time from specified time options, or no-op
      timeSelector::setTimeIfPresent(runTime, args);

   In some cases, if can be desirable to force starting from the
   initial Time=0 when no time options have been specified:

      // Set time from specified time options, or force start from Time=0
      timeSelector::setTimeIfPresent(runTime, args, true);

   These changes make a number of includes redundant:

     * addTimeOptions.H
     * checkConstantOption.H
     * checkTimeOption.H
     * checkTimeOptions.H
     * checkTimeOptionsNoConstant.H

ENH: add time handling to setFields, setAlphaField (#3143)

    Co-authored-by: Johan Roenby <>

STYLE: replace instant("constant") with instant(0, "constant")

- avoids relying on atof parse behaviour returning zero
2024-05-06 22:22:42 +02:00
Mark Olesen
7f355ba343 STYLE: communication name "buffered" instead of "blocking"
- "buffered" corresponds to MPI_Bsend (buffered send),
  whereas the old name "blocking" is misleading since the
  regular MPI_Send also blocks until completion
  (ie, buffer can be reused).

ENH: IPstream::read() returns std::streamsize instead of label (#3152)

- previously returned a 'label' but std::streamsize is consistent with
  the input parameter and will help with later adjustments.

- use <label> instead of <int> for internal accounting of the message
  size, for consistency with the underyling List<char> buffers used.

- improve handling for corner case of IPstream receive with
  non-blocking, although this combination is not used anywhere
2024-04-29 10:19:40 +02:00
Mark Olesen
46e1b00c34 ENH: handle sub-mesh connectivity by subsetting of adjacency matrix
- in renumberMesh replace calculation of a subMesh connectivity
  with calculation of the full mesh connectivity followed by subsetting
  of the full adjacency matrix. This should reduce the overall number of
  operations. (MR !669)
2024-03-19 14:09:22 +01:00
Mark Olesen
0c84e50583 ENH: refine renumberMesh and renumberMethod (addenda to !669)
- provide no_topology() characteristic to avoid triggering potentially
  expensive mesh connectivity calculations when they are not required.

- remove/deprecate unused pointField references from the renumber
  methods. These appear to have crept in from outer similarities
  with decompositionMethod, but have no meaning for renumbering.

- remove/deprecate various unused aggregation renumberings since these
  have been previously replaced by pre-calling calcCellCells, or
  using bandCompression directly.

- make regionFaceOrder for block-wise renumbering optional and
  treat as experimental (ie, default is now disabled).

  The original idea was to sort the intra-region and inter-region faces
  separately. However, this will mostly lead to non-upper triangular
  ordering between regions, which checkMesh and others don't really like.

ENH: add timing information for various renumberMesh stages

ENH: add reset of clockTime and cpuTime increment

- simplifies section-wise timings

ENH: add globalIndex::null() and fieldTypes::processorType conveniences

- provides more central management of these characteristics
2024-03-10 17:45:44 +01:00
Mark Olesen
5680ce1ee2 STYLE: use spanstream instead of stringstream in more places
- particularly useful in these combinations:

  1.
      OCharStream buf;
      // populate

      ISpanStream is(buf.view());
      // parse

  2.
      // read from file
      ifile.getLine(str);

      ISpanStream is(str);
      // parse

  These avoid making a copy of the character content, compared to
  versions with stringstream:

      OStringStream buf;
      IStringStream is(buf.str());
2024-03-07 15:04:54 +01:00
Mark Olesen
61aaacd088 ENH: adjust renumbering methods, extend renumberMesh options
- renumberMesh now has -dry-run, -write-maps, -no-fields,
  -renumber-method, -renumber-coeffs options.

  * Use -dry-run with -write-maps to visualize the before/after
    effects of renumbering (creates a VTK file).

  * -no-fields to renumber the mesh only.
    This is useful and faster when the input fields are uniform
    and the -overwrite option is specified.

  * -renumber-method allows a quick means of specifying a different
    default renumber method (instead of Cuthill-McKee).

    The -renumber-coeffs option allows passing of dictionary content
    for the method.

    Examples,

       // Different ways to specify reverse Cuthill-McKee

       *  -renumber-method RCM
       *  -renumber-coeffs 'reverse true;'
       *  -renumber-method CuthillMcKee
       *  -renumber-coeffs 'reverse true;'
       *  -renumber-coeffs 'method CuthillMcKee; reverse true;'

       // Other (without dictionary coefficients)
       *  renumberMesh -renumber-method random

       // Other (with dictionary coefficients)
       renumberMesh \
           -renumber-method spring \
           -renumber-coeffs 'maxCo 0.1; maxIter 1000; freezeFraction 0.99;'

       // Other (with additional libraries)
       renumberMesh -renumber-method zoltan -lib zoltanRenumber

COMP: build zoltan renumbering to MPI-specific location

- zoltan and Sloan renumbering are now longer automatically linked to
  the renumberMesh utility but must be separately loaded by a
  command-line option or through a dictionary "libs" entry.

ENH: add output cellID for decomposePar -dry-run -cellDist
2024-03-06 17:58:47 +01:00
Mark Olesen
7006056eae ENH: remove blocking communication for gather patterns
ENH: eliminate unnecessary duplicate communicator

- in globalMeshData previously had a comm_dup hack to avoid clashes
  with deltaCoeffs calculations. However, this was largely due to a
  manual implementation of reduce() that used point-to-point
  communication. This has since been updated to use an MPI_Allreduce
  and now an MPI_Allgather, neither of which need this hack.
2024-03-06 11:10:54 +01:00
Mark Olesen
b98f53ceca ENH: make ITstream positioning methods noexcept
ENH: add rank() method for compound tokens

ENH: add IOstream::minPrecision(unsigned)

- reduced typing, more expressive, no namespace ambiguity with max()

    new: IOstream::minPrecision(10);
    old: IOstream::defaultPrecision(max(10u, IOstream::defaultPrecision()));

STYLE: namespace qualify min/max for some buffer sizing [clang/hipp]
2024-03-06 11:01:57 +01:00
Mark Olesen
5a70be0846 ENH: use SubList for CompactListList access
- this was previously a UList instead of SubList,
  but SubList supports better assignment of values

ENH: add invertOneToManyCompact

- returns a CompactListList<label> instead of labelListList, which
  allows for reuse as partitioning table etc and/or slightly reduced
  memory overhead
2024-03-06 09:14:42 +01:00
Mark Olesen
04d880e2ce STYLE: use send/recv serializers for globalIndex and mapDistribute etc 2024-02-24 19:51:24 +01:00
Mark Olesen
4f43f0302d ENH: additional Map/HashTable constructors and ListOp functions
- construct Map/HashTable from key/value lists.

- invertToMap() : like invert() but returns a Map<label>,
  which is useful for sparse numbering

- inplaceRenumber() : taking a Map<label> for the mapper

ENH: construct/reset CStringList for list of C-strings
2024-02-23 18:10:48 +01:00
Mark Olesen
7b7dde0a6d BUG: memory leak and interpolated fields not updated (fixes #3089)
- in singleCellMesh application:
  also remove the interpolated fields from the registry,
  which ensures they are correctly updated between time steps
2024-01-17 17:31:35 +01:00
Mark Olesen
032a4519ff COMP: adjust link parameters (mingw)
- adjointOptimisation : missing link to fileFormats

- snappyHexMesh : add fvMotionSolvers link (#3058)

STYLE: remove remnant -DFULLDEBUG hints

- now more easily covered with wmake -debug ...
2023-12-20 19:22:19 +01:00
Andrew Heather
af43f9aa24 ENH: caseInfo - use OF dictionary as default writeFormat
STYLE: checkMesh - removed writeChecks uppercase JSON option
2023-12-19 20:31:08 +00:00
Mark Olesen
0352a224b7 COMP: access transformedElements by reference, not copy
- better code style and seems to avoid triggering a gcc warning about
  possibly uninitialized values

COMP: JSONformatter writeEntry missing a return value

STYLE: accept 'json' for checkMesh write format

- consistent with caseInfo functionObject
2023-12-15 16:17:15 +01:00
Mark Olesen
ca25929372 ENH: minor simplifications for handling region meshes
- static version of polyMesh::meshDir(), which takes a region name

      polyMesh::meshDir(regionName)
  vs
      polyMesh::regionName(regionName)/polyMesh::meshSubDir

STYLE: use polyMesh::regionName(..) instead of comparing to defaultRegion

STYLE: use getOrDefault when retrieving various -region options

FIX: polyMesh::dbDir() now checks registry name, not full path (#3033)
2023-12-07 17:42:24 +01:00
Andrew Heather
f8742146a7 ENH: checkMesh - added -writeChecks option
Added -writeChecks <format> option

- writes computed mesh metrics to file in using <format>
- currently supported formats are OpenFOAM dictionary and JSON
2023-12-01 15:04:41 +00:00
Mark Olesen
2ab3490552 STYLE: invert ASCII/BINARY checks. Helps if adding other formats
STYLE: use globalIndex::totalSize()
2023-11-23 22:42:20 +01:00
Mark Olesen
d9f0587416 ENH: promote ListOps::identity to Foam::identity
- becoming more frequently used and there is no ambiguity in calling
  parameters either - identity(label) vs identity(labelUList&).

  Provide both int32 and int64 versions.
2023-10-26 11:24:57 +02:00
Mark Olesen
d9727fad1c ENH: use updated HashTable methods 2023-10-11 18:11:37 +00:00
Mark Olesen
0e11f47f74 STYLE: prefer emplace_back() to append() + last() 2023-08-29 11:24:16 +02:00
Mark Olesen
698e05eeb3 STYLE: prefer push_uniq() to appendUniq
- more consistency with push_back etc.
2023-08-29 11:24:16 +02:00
Mark Olesen
2395e493d1 ENH: simplify add/remove patch/zone groups
STYLE: reuse polyBoundaryMesh patchSizes(), patchStarts()
2023-08-29 11:24:16 +02:00
Mark Olesen
aad4c2222e ENH: subsetMesh -exclude-patches (#2947)
STYLE: use -exclude-patches instead of -excludePatch for other utilities

- avoids inconsistencies with utilities like foamToVTK etc.
2023-08-02 12:35:10 +02:00
Mark Olesen
14f7d44ca0 ENH: patch/zone indices with select/ignore combination
STYLE: prefer indices() to patchSet() with warn=false
2023-08-02 12:34:41 +02:00
Mark Olesen
db16d80840 ENH: use objectRegistry/IOobjectList sorted instead of lookupClass
- in most cases a parallel-consistent order is required.
  Even when the order is not important, it will generally require
  fewer allocations to create a UPtrList of entries instead of a
  HashTable or even a wordList.
2023-07-31 20:11:32 +02:00
Mark Olesen
5397c9ac04 COMP: use csorted() instead of sorted() 2023-07-31 20:11:32 +02:00
Mark Olesen
f18a29a742 ENH: subsetMesh suppress wildcard selection of processor patches (#2947) 2023-07-31 14:07:17 +02:00
mattijs
a8df552998 ENH: checkMesh: use built-in merging 2023-07-18 12:03:58 +01:00
mattijs
4d7c827bd7 ENH: checkMesh: report on processor patch if non-parallel. Fixes #698 2023-06-26 12:14:30 +01:00
Mark Olesen
1cdba9b269 ENH: make checkMesh writing of bad edges optional (#2771)
- primarily relevant for finite-area meshes, in which case they can be
  considered to be an additional, detailed diagnositic that is
  normally not needed (clutters the file system).

  Writing can be enabled with the `-write-edges` option.
2023-06-13 20:41:53 +02:00
mattijs
fcbfa40b0b ENH: checkMesh: small message change 2023-05-30 10:41:15 +01:00
Mark Olesen
302eb7b560 REGRESSION: createBaffles : incorrect dictionary lookup
- was introduced with f7a7f1c14c, only affected very recent develop
2023-05-20 18:59:20 +02:00
Mark Olesen
f7a7f1c14c ENH: reduced warnings about createBaffles on processor patches (#2781)
- coupled patches are treated distinctly and independently of
  internalFacesOnly, it makes little sense to report them with a
  warning about turning off boundary faces (which would not work
  anyhow).

STYLE: update code style for createBaffles
2023-05-17 11:46:57 +02:00
Mark Olesen
783934ccad ENH: add global topology check in checkMesh and makeFaMesh (#2771)
- detect when boundary patches are multiply connected across edges

STYLE: initialize some faMesh values
2023-05-09 19:30:58 +02:00
Mark Olesen
e967305ef2 STYLE: use calculatedType() and zeroGradientType() methods 2023-05-02 13:34:12 +02:00
Mark Olesen
2b1061420c STYLE: remove trailing space, tabs 2023-04-24 15:37:33 +02:00
Mark Olesen
25bc7d65f7 STYLE: prefer REGISTER/NO_REGISTER instead of true/false for IOobject
- self-documenting
2023-03-10 14:16:32 +00:00
Mark Olesen
d597b3f959 STYLE: check iterator validity with good() instead of found()
- aligns better with other container checks
2023-02-10 17:12:48 +01:00
Mark Olesen
5672bb296f ENH: use cmptMag, cmptMultiply instead of replacing field components 2023-01-31 12:36:41 +01:00
mattijs
fa7f0e1b67 ENH: pureZoneMixture: different mixture properties according to cellZone 2022-12-14 15:07:00 +00:00