Commit Graph

310 Commits

Author SHA1 Message Date
Andrew Heather
5d7d24df94 GIT: Housekeeping 2019-12-06 17:43:08 +00:00
Mark Olesen
1310e85225 ENH: support 'get()' for retrieving argList options
- previously only had 'opt<..>()' for options, but 'get<..>()'
  provides more similarity with dictionary methods.
  The 'opt<..>()' method is retained.
2019-11-26 21:07:11 +01:00
Mark Olesen
98467036b3 STYLE: regularize quoting and exit on failed 'cd' 2019-11-13 13:19:16 +01:00
Mark Olesen
7c1190f0b1 ENH: rationalize some string methods.
- silently deprecate 'startsWith', 'endsWith' methods
  (added in 2016: 2b14360662), in favour of
  'starts_with', 'ends_with' methods, corresponding to C++20 and
  allowing us to cull then in a few years.

- handle single character versions of starts_with, ends_with.

- add single character version of removeEnd and silently deprecate
  removeTrailing which did the same thing.

- drop the const versions of removeRepeated, removeTrailing.
  Unused and with potential confusion.

STYLE: use shrink_to_fit(), erase()
2019-11-11 18:50:00 +01:00
Mark Olesen
ec7e3c88e4 ENH: test for WM_PROJECT_DIR being set/unset in scripts 2019-11-06 09:18:51 +01:00
OpenFOAM bot
e9219558d7 GIT: Header file updates 2019-10-31 14:48:44 +00:00
Andrew Heather
96e7dd8da6 Merge branch 'develop' 2019-06-27 13:27:57 +01:00
Mark Olesen
897528da1a ENH: streamline handling of static/dynamic libs in detection scripts 2019-04-29 10:04:44 +02:00
mattijs
bc53e50c90 CONTRIBUTION: gmshToFoam: support version 4 mesh format. Fixes #1155.
Patch contributed by Gavin Ridley.
2019-04-25 16:33:17 +01:00
mattijs
64ed81b78f BUG: gmsh: skip empty lines. See #1155.
Fix provided by Gavin Ridley.
2019-04-11 11:07:28 +01:00
mattijs
7cc9961ff2 BUG: gmsh: skip empty lines. See #1155.
Fix provided by Gavin Ridley.
2019-04-11 11:07:28 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
Mark Olesen
567ae55e8e STYLE: improve input check on gmshToFoam 2019-01-23 22:45:00 +01:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
Mark Olesen
74d9dc3f50 BUG: polyMesh constructor AUTO_WRITE flag, ignored readOpt (#1147)
- fixed some more places with an explicit AUTO_WRITE.

BUG: revert handling of the readOption. It should not be NO_READ.

  In cases where the user a IOobject without specifying read/write, it
  defaults to NO_READ anyhow. However, the move constructor can also
  be called with empty lists and a read option. This has the same
  signature, but obviously will not work with NO_READ.
2019-01-07 22:23:19 +01:00
Mark Olesen
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
f38190213c ENH: support usage descriptions for command arguments 2018-12-12 11:58:56 +01:00
Mark Olesen
68ec561df8 STYLE: add usage notes to more utilities and solvers 2018-12-11 15:25:27 +01:00
Mark Olesen
1883a872a1 STYLE: adds comments in empty Make/options files
- easier when making modifications

STYLE: spelling in topoSetSource comments
2018-11-13 15:21:13 +01:00
Mark Olesen
a7a346b206 STYLE: indentation for FatalIOErrorInFunction calls 2018-11-06 09:49:22 +01:00
Mark Olesen
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
Mark Olesen
c1964d7807 ENH: distinguish between face areaNormal/unitNormal in the code 2018-08-10 15:43:06 +02:00
Mark Olesen
ae36f5f504 ENH: change argList get<> and getList<> from read<>, readList<>
- more consistent with dictionary method naming. The get<> or
  getList<> returns a value, doesn't read into a existing location.
2018-08-09 11:27:36 +02:00
Mark Olesen
ca5d91239d STYLE: use edgeHashes include
STYLE: use initial hash size 128 instead of 100 in a few places
2018-08-08 23:54:27 +02:00
Mark Olesen
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
Mark Olesen
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
Mark Olesen
319e09e32f ENH: avoid blockMesh removal of files for special cases (issue #963)
- do not remove if the dictionary failed to load.
- do not remove if -blockTopology was used.
2018-08-03 14:30:41 +02:00
Mark Olesen
cb919a6c41 ENH: tag some options as 'advanced' (only shown with -help-full)
General:
    * -roots, -hostRoots, -fileHandler

Specific:
    * -to <coordinateSystem> -from <coordinateSystem>

- Display -help-compat when compatibility or ignored options are available

STYLE: capitalization of options text
2018-07-31 11:54:15 +02:00
Mark Olesen
96b65a781d STYLE: remove spacing around forAll macros and template '> >' closing 2018-07-06 11:03:28 +02:00
Mark Olesen
a592ebc073 STYLE: avoid unrestricted dictionary lookup in conversion, sampling, surfMesh
- aids with detection of excess tokens (issue #762)

- deprecated dictionary::operator[] in favour of the lookup() method
  which offers more flexibilty and clarity of purpose.
  Additionally, the read<> and get<> forms should generally be used
  instead anyhow.
2018-07-18 13:33:00 +02:00
Andrew Heather
853b9abb79 ENH: Utilities - add -region option when creating meshes 2018-01-16 12:10:20 +00:00
mattijs
f51ee9a0e2 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-31 17:34:16 +01:00
Mark Olesen
f9fe71815a STYLE: consistent use of '= delete' for removed constructors/assignments
- make the purpose more explicit, and reduces some work for the
  compiler as well.
2018-05-30 12:03:17 +02:00
Mark Olesen
6b6b36afd3 STYLE: revert bitSet/HashSet setMany() to set() method (issue #837)
- improves backward compatibility and more naming consistency.
  Retain setMany(iter1, iter2) to avoid ambiguity with the
  PackedList::set(index, value) method.
2018-05-29 17:38:02 +02:00
Mark Olesen
b4a2876c56 ENH: use move construct for cellZone/faceZone 2018-03-07 11:28:05 +01:00
Mark Olesen
4fe8ed8245 STYLE: use direct iteration for HashSet
- The iterator for a HashSet dereferences directly to its key.

- Eg,

      for (const label patchi : patchSet)
      {
          ...
      }
  vs.
      forAllConstIter(labelHashSet, patchSet, iter)
      {
          const label patchi = iter.key();
          ...
      }
2018-03-06 00:29:03 +01:00
Mark Olesen
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
Mark Olesen
b4d38ab468 ENH: improve handling of ThirdParty packages
- generalize some of the library extensions (.so vs .dylib).
  Provide as wmake 'sysFunctions'

- added note about unsupported/incomplete system support

- centralize detection of ThirdParty packages into wmake/ subdirectory
  by providing a series of scripts in the spirit of GNU autoconfig.
  For example,

      have_boost, have_readline, have_scotch, ...

  Each of the `have_<package>` scripts will generally provide the
  following type of functions:

      have_<package>          # detection
      no_<package>            # reset
      echo_<package>          # echoing

  and the following type of variables:

      HAVE_<package>          # unset or 'true'
      <package>_ARCH_PATH     # root for <package>
      <package>_INC_DIR       # include directory for <package>
      <package>_LIB_DIR       # library directory for <package>

  This simplifies the calling scripts:

      if have_metis
      then
          wmake metisDecomp
      fi

  As well as reducing clutter in the corresponding Make/options:

      EXE_INC = \
          -I$(METIS_INC_DIR) \
          -I../decompositionMethods/lnInclude

      LIB_LIBS = \
          -L$(METIS_LIB_DIR) -lmetis

  Any additional modifications (platform-specific or for an external build
  system) can now be made centrally.
2018-04-24 14:51:19 +02:00
Andrew Heather
a230e8d408 STYLE: Correcting typos 2018-03-28 17:14:16 +01:00
Mark Olesen
5d008f7a18 ENH: improvements for PtrList, UPtrList and new PtrDynList container
- improve internal handling to permit deriving resizable containers
  (eg, PtrDynList).

- include '->' iterator dereferencing

- Only append/set non-const autoPtr references. This doesn't break
  existing code, but makes the intention more transparent.
2018-03-22 01:13:38 +01:00
Mark Olesen
d17bc72585 ENH: consistency of HashSet setMany(), insertMany() with packed-list version
- this also provides a better separation of the intent
  (ie, inserting a single value, or inserting multiply values)
2018-03-14 21:08:29 +01:00
Mark Olesen
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
37e248c74b STYLE: consistent use of wordHashSet instead of HashSet<word>
- the wordHashSet typedef is always available when HashSet has been
  included.

- use default HashTable key (word) instead of explicitly mentioning it
2018-02-22 11:19:47 +01:00
Mark Olesen
09a6e94073 BUG: incorrect HashTable / HashSet instances
- Eg instead of using labelHashSet, used HashSet<label> which uses
  the string::hash for hashing. Other places inadvertently using the
  string::hash instead of Hash<label> for hashing.

STYLE: use Map<..> instead of HashTable<.., label, Hash<label>>

- reduces clutter
2018-02-09 09:30:02 +01:00
Mark Olesen
1b9aec2a3d CONP: suppress register warnings for clang only 2018-01-30 06:49:32 +01:00
Mark Olesen
e13f8a38a9 COMP: suppress warning about deprecated register keyword (Flex) 2018-01-29 09:13:28 +01:00
Mark Olesen
345a2a42f1 ENH: simplify method names for reading argList options and arguments
- use succincter method names that more closely resemble dictionary
  and HashTable method names. This improves method name consistency
  between classes and also requires less typing effort:

    args.found(optName)        vs.  args.optionFound(optName)
    args.readIfPresent(..)     vs.  args.optionReadIfPresent(..)
    ...
    args.opt<scalar>(optName)  vs.  args.optionRead<scalar>(optName)
    args.read<scalar>(index)   vs.  args.argRead<scalar>(index)

- the older method names forms have been retained for code compatibility,
  but are now deprecated
2018-01-08 15:35:18 +01:00
Mark Olesen
16db44b67d STYLE: add flex major version in '#if' conditional 2017-12-17 16:22:39 +01:00