Commit Graph

1290 Commits

Author SHA1 Message Date
Mark Olesen
13967565a6 ENH: stringOps removeComments and inplaceRemoveComments
- useful for manual handling of string with comments
2019-09-24 08:25:32 +02:00
sergio
e3b05494f7 COMP: relocate regionProperties to meshTools 2019-09-20 14:06:30 -07:00
Mark Olesen
79dff5d8fe ENH: add col/row access methods for Tensor2D (#1430) 2019-09-23 14:40:47 +02:00
Mark Olesen
07fb19e9d8 ENH: add construct dimensionedType from primitiveEntry
- allows direct reading of a single entry with token checking
2019-08-28 21:16:19 +02:00
Mark Olesen
c9cb4ce34f ENH: minor improvements, cleanup of token class
- relax casting rules
  * down-cast of labelToken to boolToken
  * up-cast of wordToken to stringToken.
    Can use isStringType() test for word or string types

- simplify constructors, move construct etc.

- expose reset() method as public, which resets to UNDEFINED and
  clears allocated storage etc.

DEFEATURE: remove assign from word or string pointer.

- This was deprecated 2017-11 and now removed.
  For this type of content transfer, move assignment should be used
  instead of stealing pointers.
2019-08-20 17:48:31 +02:00
Mark Olesen
b5342c166c ENH: handle keyType type (literal/regex) as enum instead of bool
- makes its use somewhat clearer and allows more future options
2019-08-20 13:48:05 +02:00
Mark Olesen
ba69505225 ENH: add ITstream::toString() method
- creates a std::string with space-delimited tokens, which can be sent
  to another application or even re-parsed into tokens
2019-08-14 19:29:02 +02:00
Mark Olesen
1d79c0452c ENH: additional contiguous traits (#1378)
- change contiguous from a series of global functions to separate
  templated traits classes:

    - is_contiguous
    - is_contiguous_label
    - is_contiguous_scalar

  The static constexpr 'value' and a constexpr conversion operator
  allow use in template expressions.  The change also makes it much
  easier to define general traits and to inherit from them.

  The is_contiguous_label and is_contiguous_scalar are special traits
  for handling data of homogeneous components of the respective types.
2019-07-29 11:36:30 +02:00
Mark Olesen
3c07a1bb6f ENH: Foam::name() of memory address
- returns the memory address formatted in hexadecimal, which can be
  useful for detailed information
2019-08-12 10:46:29 +02:00
Mark Olesen
1dde76c8dd ENH: add bitSet::begin(pos) to provide alternative start for indexing 2019-08-07 13:49:48 +02:00
Mark Olesen
0cfd019b92 STYLE: add data/cdata to VectorSpace for consistency with FixedList etc 2019-08-06 12:00:56 +02:00
Mark Olesen
c28d785a73 STYLE: adjust name, default count for readRawLabel/readRawScalar (#1378) 2019-08-06 11:54:14 +02:00
Mark Olesen
ef9bb4ae16 ENH: add low-level readRawLabels, readRawScalars (#1378)
- these use the additional byte-size checks in IOstream to handle
  native vs non-native sizes
2019-07-29 16:01:34 +02:00
Mark Olesen
8b3d77badc ENH: make OSstream indentation adjustable
- this is principally for cases where reduced indentation is desired,
  such as when streaming to a memory location. If the indentation size
  is zero or one, only a single space will be used to separate the
  key/value.

  This change does not affect the stream allocation size, since the
  extra data falls within the padding.

ENH: relocate label/scalar sizes from Istream to IOstream.

- could allow future use for output streams as well?

  Due to padding, reorganization has no effect on allocated size
  of output streams.

STYLE: add read/write name qualifier to beginRaw, endRaw

- removes ambiguity for bi-directional streams

STYLE: fix inconsistent 'const' qualifier on std::streamsize

- base Ostream was without const, some derived streams with const
2019-07-31 12:51:54 +02:00
Mark Olesen
6f8da834a9 ENH: add OListStream::swap(DynamicList<char>&)
- allows full recovery of allocated space, not just addressable range.

  This can be particularly useful for code patterns that repeatedly
  reuse the same buffer space. For example,

      DynamicList<char> buf(1024);

      // some loop
      {
          OListStream os(std::move(buf));
          os << ...

          os.swap(buf);
      }

   Can read back from this buffer as a second operation:

      {
          UIListStream is(buf);
          is >> ...
      }
2019-07-31 11:31:40 +02:00
Mark Olesen
78ce269a52 ENH: add field operations for complex (#1365) 2019-07-28 21:19:43 +02:00
Mark Olesen
1d86fc4f6b ENH: add single-parameter sortedOrder() function 2019-07-17 11:08:40 +02:00
Mark Olesen
e03c0977f5 ENH: support Foam::mv overwrite of existing files on windows (#1238)
- the behaviour of std::rename with overwriting an existing file is
  implementation dependent:
    - POSIX: it overwrites.
    - Windows: it does not overwrite.

- for Windows need to use the ::MoveFileEx() routine for overwriting.

  More investigation is needed for proper handling of very long names.
2019-07-09 18:52:06 +02:00
Mark Olesen
bbc2d4a8b0 ENH: HashTable and HashSet improvements
- unfriend HashSet, HashTable IO operators

- global min(), max(), minMax() functions taking a labelHashSet and an
  optional limit. For example,

      labelHashSet set = ...;

      Info<< "min is " << min(set) << nl;
      Info<< "max (non-negative) " << max(set, 0) << nl;

- make HashTable iterator '->' dereferencing more consistent by also
  supporting non-pointer types as well.

- read HashTable values in-situ to avoid copying
2019-07-12 18:00:00 +02:00
Mark Olesen
488f8938b2 ENH: add invert (inverse mappings) for bitSet 2019-07-12 12:00:00 +02:00
Mark Olesen
4b8fabaa4b STYLE: relocate Allwmake-scan to src/
- reduced clutter. Mostly only need to scan source tree.

- 00-dummy: use wmake/src/Allmake to get native (not cross-compiled)
  wmake toolchain binaries
2019-06-28 09:55:25 +02:00
Mark Olesen
10a03ceba2 STYLE: relocate Allwmake-scan to src/
- reduced clutter. Mostly only need to scan source tree.

- 00-dummy: use wmake/src/Allmake to get native (not cross-compiled)
  wmake toolchain binaries
2019-06-28 09:55:25 +02:00
Andrew Heather
be44dcaf1f RELEASE: Version clean-up for release 2019-06-25 11:51:19 +01:00
Mark Olesen
fa8ab2d5b4 STYLE: add Test-copyFile 2019-06-24 14:46:38 +02:00
Mark Olesen
f863925112 STYLE: use uintptr_t instead of long 2019-06-13 19:37:27 +02:00
Mark Olesen
03de501310 STYLE: fix file permissions, inconsistent Test files 2019-06-04 17:50:18 +02:00
kuti
e42cc287de BUG: incorrect scalar/complex division (#1331)
ENH: define addition/subtraction operations for scalar and complex

- required since construct complex from scalar is explicit
- additional tests in Test-complex
2019-06-04 09:08:42 +01:00
Mark Olesen
fc11c40841 ENH: add wmake -debug option
- forces c++DBUG='-DFULLDEBUG -g -O0' for the compilation, to allow
  localized debugging during development without file editing and
  while retaining the WM_COMPILE_OPTION (eg, Opt)

  Note that switching between 'wmake' and 'wmake -debug' will not
  cause existing targets to be rebuilt. As before, these are driven by
  the dependencies. An intermediate wclean may thus be required.
2019-06-03 10:16:31 +02:00
kuti
745624c024 ENH: partial overhaul of Matrix type (#1220)
- additional operators:
  + compound assignment
  + inner product: operator&
  + outer product: operator^

- additional functions:
   - MatrixBlock methods: subColumn, subRow, subMatrix
   - L2 norms for matrix or column
   - trace, diag, round, transpose

- MatrixBlock methods: col(), block() are deprecated since their
  access patterns with (size, offset) are unnatural/unwieldy.

- verifications by test/Matrix/Test-Matrix
2019-05-23 11:32:45 +01:00
Mark Olesen
db0678bf0e TUT: incorrect regex escaping in fvSchemes
- error trapped by C++11 regex
2019-05-30 14:26:15 +02:00
Mark Olesen
96d0a8f2af ENH: harmonize matrix constructors (#1220)
- generalize identity matrix constructors for non-scalar types

- add constructors using labelPair for the row/column sizing information.
  For a SquareMatrix, this provides an unambiguous parameter resolution.

- reuse assignment operators

STYLE: adjust matrix comments
2019-05-29 09:50:46 +02:00
mattijs
7945ca739c ENH: correct sumProd return type (#1086)
- previously returned scalar, but now return pTraits cmptType
  which is the same as scalarProduct / outerProduct type.
2019-02-10 14:31:35 +00:00
Mark Olesen
aab644a3fc STYLE: eliminate complex constants that are duplications of pTraits
- eg pTraits<complex>::zero, pTraits<complex>::one instead.
  This is consistent with other primitives such as scalar, label etc.
2019-05-27 18:09:43 +02:00
Mark Olesen
b8dc024444 BUG: incorrect IOobject instance for absolute windows path (#1238)
STYLE: remove unused local variables in edgeMeshFormat
2019-05-23 10:27:06 +01:00
Mark Olesen
061eb53fb5 ENH: improvements, modernization of matrix containers (#1220)
- add iterators, begin/end, empty() methods for STL behaviour.
  Use standard algorithms where possible
     * std::fill, std::copy
     * std::min_element, std::max_element

- access methods consistent with other OpenFOAM containers:
     * data(), cdata(), uniform()

- Use ListPolicy to impose output line breaks

- Can recover matrix storage for re-use elsewhere.
  For example, to populate values with 2D i-j addressing and later
  release it as flat linear storage.

- construct/assign moveable

- added minMax() function for Matrix

- additional inplace +=, -=, *=, /= operations

- add named methods at() and rowData() to Matrix.
  Allows a better distinction between linear and row-based addressing

- low-level matrix solve on List/UList instead of Field
2019-05-22 12:18:31 +01:00
kuti
f8a70115fd ENH: add sign(), csign() methods for complex
- use std::hypot for complex mag() instead of long-hand version

- Detail::conj() function for complex or non-complex
2019-05-21 11:18:12 +01:00
Mark Olesen
32916fa845 ENH: dictionary checking methods with predicates on the input values
- can be used to check the validity of input values.

Example:

    dict.getCheck<label>("nIters", greaterOp1<label>(0));
    dict.getCheck<scalar>("relax", scalarMinMax::zero_one());

- use 'get' prefix for more regular dictionary methods.
  Eg, getOrDefault() as alternative to lookupOrDefault()

- additional ops for convenient construction of predicates

ENH: make dictionary writeOptionalEntries integer

- allow triggering of Fatal if default values are used

ENH: additional scalarRange static methods: ge0, gt0, zero_one

- use GREAT instead of VGREAT for internal placeholders

- additional MinMax static methods: gt, le
2019-05-21 19:10:14 +01:00
Mark Olesen
3a00dd9b9a CONFIG: use C++11 regex instead of POSIX for newer compilers
BUG: The ok_ flag was not being updated in the regExpCxx::set() method
2019-05-21 12:29:52 +01:00
Mark Olesen
6c8f6a2f50 ENH: support all 12 Euler rotation orders (#1292)
- adjust naming of quaternion 'rotationSequence' to be 'eulerOrder'
  to reflect its purpose.

- provide rotation matrices directly for these rotation orders in
  coordinateRotations::euler for case in which the rotation tensor
  is required but not a quaternion.
2019-05-10 11:20:21 +02:00
Mark Olesen
0f1fcb97b5 ENH: additional MinMax span() and zero_one() methods 2019-05-08 12:12:00 +02:00
Mark Olesen
ac317699d8 ENH: additional HashTable emplace/insert/set methods (#1286)
- support move insert/set and emplace insertion.

  These adjustments can be used for improved memory efficiency, and
  allow hash tables of non-copyable objects (eg, std::unique_ptr).

- extend special HashTable output treatment to include pointer-like
  objects such as autoPtr and unique_ptr.

ENH: HashTable::at() method with checking. Fatal if entry does not exist.
2019-05-06 08:34:39 +02:00
Mark Olesen
23e5d43e4e ENH: add colour for x3d surface writer (#1057)
- can be used for outputing sampled surfaces in x3d format for direct
  import in other rendering tools.
2019-05-06 17:13:22 +02:00
Mark Olesen
3089a11647 STYLE: comments and parameter names for coordinateRotations::euler 2019-05-03 13:31:00 +02:00
Mark Olesen
675aa8053a ENH: support pointer cast from autoPtr 2019-05-03 09:59:53 +02:00
mattijs
912009c458 ENH: overset: insert remote interpolation into lduMatrix
All remote contributions to interpolation stencils now
get added as 'processor' type lduInterfaces. This guarantees
a consistent matrix, e.g. initial residual is normalised to 1.

Second change is the normalisation of the interpolation discretisation
which uses the diagonal from the unmodified equation. This helps
GAMG.
2019-05-02 16:49:48 +01:00
Mark Olesen
26a391b1e9 ENH: no string quotes when using OSHA1stream (#1301)
- previously would have different SHA1 depending on whether the
  string was a C-string, a C++-string or if the SHA1 was calculated
  directly or via the OSHA1stream.

    - SHA1("string")
    - OSHA1stream << "string";
    - OSHA1stream << string("string");

  By avoiding string quoting on output, they now all deliver the same
  result. This also means that the following will no longer change the SHA1
  content, since it does not add anything:

    osha<< string() << string() << string() << string();

  This would have previously add a pair of double quotes each time!
2019-04-30 12:43:59 +02:00
Mark Olesen
4a51239820 STYLE: restrict posix and ieee754 random tests (non-portable) to linux 2019-04-30 10:05:53 +02:00
mattijs
25e0182fca COMP: label64: fixes #1297. 2019-04-29 14:23:05 +01:00
Mark Olesen
beefee48d4 COMP: adjust compilation order with updated interdependencies
- Eg, with surface writers now in surfMesh, there are fewer libraries
  depending on conversion and sampling.

COMP: regularize linkage ordering and avoid some implicit linkage (#1238)
2019-04-28 14:44:33 +02:00
Mark Olesen
59da4cf56d STYLE: use uintptr_t cast instead of long when reporting addresses 2019-04-29 08:15:48 +02:00
Andrew Heather
6146667284 Merge branch 'feature-indirect-lists' into 'develop'
Feature indirect lists

See merge request Development/OpenFOAM-plus!253
2019-04-29 10:48:17 +01:00
Mark Olesen
180a284814 ENH: add '==' and '!=' operators for PackedList/bitSet
- also available as equal() member function
2019-04-26 13:01:39 +02:00
Mark Olesen
e1609d16d1 STYLE: use degToRad() instead of pi/180 2019-04-26 11:48:27 +02:00
Mark Olesen
661d1f53df ENH: additional rotation tests (#1292) 2019-04-25 20:22:06 +02:00
Mark Olesen
bf30779b64 ENH: add partial sorting to SortableList 2019-04-24 19:03:00 +02:00
Mark Olesen
b3fa961991 ENH: add Ostream output for std::vector
- convenient when using data structures from other codes
2019-04-16 18:00:20 +02:00
Mark Olesen
d14f181529 ENH: add tracking of label/scalar size when reading IOobject header
- extracts values from the arch "LSB;label=32;scalar=64" header entry
  to provision for managing dissimilar primitive sizes.

  Compensate for the additional IOobject members by narrowing the types
  for the (objectState, readOption, writeOption) enumerations
2019-04-16 12:23:01 +02:00
Mark Olesen
765493b69f ENH: generalize indirect lists and support new types
- use an IndirectListBase class for various indirect list types.

- new SortList type

  In some places the SortList can be used as a lightweight alternative
  to SortableList to have the convenience of bundling data and sort
  indices together, but while operating on existing data lists.
  In other situations, it can be useful as an alternative to
  sortedOrder.  For example,

        pointField points = ...;

        labelList order;
        sortedOrder(points, order);

        forAll(order, i)
        {
            points[order[i]] = ...;
        }

   Can be replaced with the following (with the same memory overhead)

        pointField points = ...;

        SortList<point> sortedPoints(points);

        for (point& pt : sortedPoints)
        {
            pt = ...;
        }

- new SliceList type (#1220), which can be used for stride-based
  addressing into existing lists
2019-04-11 15:24:33 +02:00
Mark Olesen
b56fbc4377 ENH: replace OSspecific clockValue with std::chrono version (#1278)
- aids with portability and maintenance (#1238)
2019-04-11 10:07:54 +02:00
Mark Olesen
d5c01f1aa4 ENH: support external MPI initialize / finalize (#1266) 2019-04-01 18:44:23 +02:00
Mark Olesen
39c91d8440 ENH: support HashTable iterator pointer dereference 2019-04-06 16:00:21 +02:00
Mark Olesen
d4eb17a9ff ENH: new sliceRange class
- this is somewhat like labelRange, but with a stride.
  Can be used to define slices (of lists, fields, ..) or as a range specifier
  for a for-loop. For example,

      for (label i : sliceRange(0, 10, 3))
      {
          ...
      }
2019-04-06 15:07:53 +02:00
Mark Olesen
06e709c26f ENH: added labelRange += and -= operators
- removed unused decrement() and increment() methods, which provided
  identical functionality as the ++, +=, --, -= operators.
2019-04-06 15:07:53 +02:00
Mark Olesen
ae94509f42 ENH: wrap internal POSIX directory reading as an iterator class 2019-04-03 17:34:56 +02:00
Mark Olesen
567fced30b ENH: add pTraits<complex> (#1247) 2019-04-04 19:00:29 +02:00
Mark Olesen
1c4e32fb6a ENH: add iterators to VectorSpace (#1265)
- this adds support for various STL operations including

    * sorting, filling, find min/max element etc.
    * for-range iteration

STYLE: use constexpr for VectorSpace rank
2019-04-04 17:14:27 +02:00
Mark Olesen
f3670521cd STYLE: use std:: qualifier on ::abort, ::exit
- consistent with use of <cstdlib> and makes for a stronger distinct
  from Foam::abort etc.
2019-04-03 20:24:30 +02:00
Mark Olesen
939144233c STYLE: adjusted wording and messages for wmake
- add an additional test for wmake pre-processing
2019-04-03 08:57:01 +02:00
Mark Olesen
89245fa796 ENH: allow space char in fileName is now configurable (#1008)
- having whitespace in fileName can be somewhat fragile since it means
  that the fileName components do not necessarily correspond to a
  'Foam::word'. But in many cases it will work provided that spaces
  are not present in the final portion of the simulation directory
  itself.

    InfoSwitches
    {
        // Allow space character in fileName (use with caution)
        allowSpaceInFileName    0;
    }

- now use doClean=true as default for fileName::validate(). Was false.

  Unlike fileName::clean() this requires no internal string rewrite
  since the characters are being copied.  Also handle any path
  separator transformations (ie, backslash => forward slash) at the
  same time. This makes it resemble the std::filesystem a bit more.
2019-04-01 16:40:22 +02:00
Mark Olesen
37819905c2 ENH: add some function support for complexField (#1247)
- operators are still incomplete, as are dimensioned fields,
  field-fields etc.

- split complexFields into separate complexField, complexVectorField files
2019-03-29 11:57:02 +01:00
Mark Olesen
fcba64913a ENH: conversion and function improvements for complex (#1247)
- add construction from and conversion to std::complex, which allows
  easier wrapping of functions

- add Foam:: functions for complex versions of sin, cos, ...
2019-03-29 11:03:48 +01:00
Mark Olesen
1788bce0a2 ENH: changed definition of complex::one (#1247)
- was historically defined as (1 1), but it is more consistent with
  the concept of one to have a real component only.

  Now defined as (1 0):  1+0i

STYLE: remove obscure '!' operator for complex conjugate

- either use the member function or the '~' operator
2019-03-27 08:24:03 +01:00
Mark Olesen
a1999bc92c ENH: additional construct/assignment methods for complex (#1247)
- construct/assign from Zero
2019-03-25 15:17:58 +01:00
mattijs
a33f1787b7 ENH: globalIndex: helper function to get remote values 2019-03-21 17:55:05 +00:00
Mark Olesen
4995fc5997 ENH: add findCell for PDRblockMesh 2019-03-14 16:24:20 +01:00
Mark Olesen
cdb36e08e9 COMP: provision for non-existence of bessel functions
- These are not defined in the C++ standard for cmath, so allow for
  compilation without them. Will need to provide replacements in the
  future or rework.
2019-03-15 11:19:15 +01:00
Mark Olesen
487877377d ENH: reorganize regular expressions and add C++11 regex support
- new regExpCxx wrapper for C++11 regex support with drop-in
  compatibility with existing code.

- regExpPosix (was regExp), for future phase out in favour of regExpCxx.

- The regExp header will continue to be used for defining an
  appropriate typedef corresponding to the preferred implementation.
2019-03-14 13:24:23 +01:00
Mark Olesen
9149b3579a ENH: PtrList and PtrListOps improvements
- PtrDynList support for move append list:
  can be used to concatenate pointer lists into a single one

- include resize in PtrDynList squeezeNull as being a natural
  combination

- support sorting operations for pointer lists (PtrListOps)
2019-03-13 10:53:28 +01:00
Mark Olesen
773ec00d4b ENH: improved consistency of surface writers (#1232)
- remove writeGeometry() in favour of write() and make it pure virtual
  so that all writers must explicitly deal with it.

- establish proxy extension at construction time and treated as an
  invariant thereafter. This avoids potentially surprising changes in
  behaviour when writing.
2019-03-11 15:09:03 +01:00
Mark Olesen
97be0673dc ENH: additional constructors for IjkField 2019-02-27 08:01:19 +01:00
Mark Olesen
4d499d3c20 ENH: basic i-j-k Field container (#1216)
- this is a simple container for fields with i-j-k addressing.

  It does not support field operations directly, but is primarily
  intended to be used when assembling field information with i-j-k
  logic. After assembly, the field can be transferred to a regular
  field for normal operations.  Eg,

      IjkField<scalar> assemble({15, 16, 200});

      // .. fill in i-j-k fields

      Field<scalar> final(std::move(assemble));
      assemble.clear();   // be pedantic
      ...
2019-02-24 18:16:17 +01:00
Mark Olesen
e9323ecbbb STYLE: use finiteVolume in Make/options placeholder 2019-02-24 17:32:13 +01:00
Mark Olesen
84270ed667 ENH: new PDRblockMesh mesh generation utility (issue #1216)
- While a rectilinear mesh can be created with blockMesh, not every mesh
  created with blockMesh will satisfy the requirements for being a
  rectilinear mesh.

  This alternative to blockMesh uses a single block that is aligned
  with the xy-z directions and specifications of the control points,
  mesh divisions and expansion ratios. For example,

    x
    {
        points  ( -13.28 -0.10 6.0 19.19 );
        nCells  (  10  12 10 );
        ratios  ( 0.2   1  5 );
    }

    y { ... }
    z { ... }

  With only one block, the boundary patch definition is simple and the
  canonical face number is used directly. For example,

    inlet
    {
        type    patch;
        faces   ( 0 );
    }
    outlet
    {
        type    patch;
        faces   ( 1 );
    }

    sides
    {
        type    patch;
        faces   ( 2 3 );
    }

    ...

- After a mesh is defined, it is trivial to retrieve mesh-related
  information such as cell-volume, cell-centres for any i-j-k location
  without an actual polyMesh.

STYLE: remove -noFunctionObjects from blockMesh

- no time loop, so function objects cannot be triggered anyhow.
2019-02-23 15:45:32 +01:00
Mark Olesen
7795adfcb4 ENH: additional PtrList constructor and memory management method
- PtrList::release() method.

  Similar to autoPtr and unique_ptr and clearer in purpose than
  using set(i,nullptr)

- Construct from List of pointers, taking ownership.

  Useful when upgrading code. Eg,

     List<polyPatch*> oldList = ...;
     PtrList<polyPatch> newList(oldList);
     ...

BUG: incorrect resizing method names (PtrDynList) in previously unused code
2019-02-22 15:55:17 +01:00
Mark Olesen
95a33c2f68 ENH: wordRes::uniq() removes all duplicates
- previously just removed duplicate literals, but now remove any
  duplicates.

- Replace previous wordHashSet implementation with a linear search
  instead. The lists are normally fairly small and mostly just have
  unique entries anyhow. This reduces the overall overhead.
2019-02-14 11:03:04 +01:00
Mark Olesen
e3e0d7c8b9 ENH: add possibility to change const reference in tmp.
- previously it was only possible to reset a pointer, but not to
  change a const-reference directly (needed a swap() to do this).
2019-02-11 18:23:06 +01:00
Mark Olesen
eaa3da72c5 ENH: extend size of NullObject for safer reinterpret cast
- previously had a single pointer/value zeros (8 bytes), this meant
  that the reinterpret cast to a List would yield a reference that
  could be unsafe under certain conditions.

  Eg,
     const labelList& myList = labelList::null();

     Info<< myList.size() << nl; // OK since size is the first parameter

     SubList<label>(myList, 0);  // Unsafe

  The SubList usage is unsafe since it passes in pointer and size into
  the underlying UList. However, the pointer from the labelList::null()
  will be whatever happens to be around in memory immediately after the
  NullObject singleton. This is mostly not a problem if the List size
  is always checked, but does mean that the data pointer is rather
  dubious.

- Increase the size of the nullObject singleton to 32 bytes of zeros
  to ensure that most reinterpret casting will not result in objects
  that reference arbitrary memory.

  The 32-byte data size is rather arbitrary, but covers most basic
  containers.
2019-02-07 11:13:13 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
Mark Olesen
9a7029004c ENH: minMax, minMaxMag as functions and field functions
- Global functions are unary or combining binary functions, which are
  defined in MinMax.H (MinMaxOps.H).

  There are also global reduction functions (gMinMax, gMinMaxMag)
  as well as supporting 'Op' classes:

  - minMaxOp, minMaxEqOp, minMaxMagOp, minMaxMagEqOp

  Since the result of the functions represents a content reduction
  into a single MinMax<T> value (a min/max pair), field operations
  returning a field simply do not make sense.

- Implemented for lists, fields, field-fields, DimensionedField,
  GeometricField (parallel reducing, with boundaries).

- Since the minMax evaluates during its operation, this makes it more
  efficient for cases where both min/max values are required since it
  avoids looping twice through the data.

  * Changed GeometricField writeMinMax accordingly.

ENH: clip as field function

- clipping provides a more efficient, single-pass operation to apply
  lower/upper limits on single or multiple values.

  Examples,

    scalarMinMax limiter(0, 1);

    limiter.clip(value)

       -> returns a const-ref to the value if within the range, or else
          returns the appropriate lower/upper limit

    limiter.inplaceClip(value)

       -> Modifies the value if necessary to be within lower/upper limit

  Function calls

    clip(value, limiter)

       -> returns a copy after applying lower/upper limit

    clip(values, limiter)

       -> returns a tmp<Field> of clipped values
2019-01-10 09:43:23 +01:00
Mark Olesen
3316055267 ENH: minor adjustments to Switch
- assignment operators return a value, for consistency with bool.

- partial revert of DEFAULT_TRUE, DEFAULT_FALSE, to reduce complexity.
2019-01-29 09:38:09 +01:00
Mark Olesen
a3f960e36f ENH: add 'default' as possible Switch state, but not as input/output
- in some circumstances we need to pass a bool value upwards to the
  caller and know if the true/false value was set based on real input
  or is a default value.

  Eg, in the object::read() we might normally have

     enabled_(dict.readIfPresent(key, true));

  but would lose information about why the value is true/false.

  We can change that by using

     enabled_(dict.readIfPresent<Switch>(key, Switch::DEFAULT_ON));

  After which we can use this information is testing.

      if
      (
          child.enabled().nonDefault()
        ? child.enabled()
        : parent.enabled()
      )
      { ... }

   And thus enable output if the parent requested it explicitly or by
   default and it has not been explicitly disabled in the child.

  No difference when testing as a bool and the text representation
  of DEFAULT_ON / DEFAULT_OFF will simply be "true" / "false".

ENH: add construction of Switch from dictionary (similar to Enum)
2019-01-28 23:18:21 +01:00
Mark Olesen
87523acad3 ENH: add ListOps find/found accepting a unary predicate (#1182)
- can also be used for other purposes.
  Eg,

      if (ListOps::found(list, matcher))
      {
         ...
      }

  vs.

      if (!findStrings(matcher, list).empty())
      {
         ...
      }
2019-01-25 11:45:03 +01:00
Mark Olesen
5ec44cd51f ENH: add range check on findIndices (#1182)
- add compile-time detection of deprecated findIndex() function

- replace occurrences of findIndex() with the equivalent container
  method
2019-01-25 10:47:34 +01:00
Mark Olesen
856f45a910 Merge remote-tracking branch 'origin/master' into develop 2019-01-23 21:27:03 +01:00
Mark Olesen
a5cc0ffcad STYLE: use const reference for caught exceptions 2019-01-23 09:03:06 +01:00
Mark Olesen
8f8a4dc682 ENH: add foamDictionary -precision option (issue #1177)
- since foamDictionary doesn't use system/controlDict it will use the
  standard default precision. The '-precision' option allows adjusting
  that value.
2019-01-22 15:11:28 +01:00
Mark Olesen
73e89f9332 ENH: add UPtrList method to squeeze out (remove) null pointers
- moves any nullptr to the end of the list where they can be
  eliminated in a second step with resize()
2019-01-21 09:51:02 +01:00
Mark Olesen
ed94a2714d STYLE: use HashTable iterator 'val()' method instead of 'object()' 2019-01-18 16:26:50 +01:00
Mark Olesen
8a391b79b5 ENH: MinMax class for handling value ranges 2019-01-14 10:00:32 +01:00
Mark Olesen
00cbf5564b STYLE: add deprecated message to NamedEnum constructor
- this class really should not be used at all anymore.
  Add a message so people recognize can find any occurrences.
2019-01-10 14:49:18 +01:00
Mark Olesen
8071020518 ENH: make List output compile-time configurable (#1160)
- introduced a ListPolicy details to make the transition between
  a short list (space separated) and a long list (newline separated)
  more configurable.

  We suppress line breaks for commonly used types that often have
  short content: (word, wordRes, keyType).
2019-01-10 14:24:11 +01:00
Andrew Heather
29315f4644 DEP: Deprecated the ensightFoamReader 2019-01-17 09:35:04 +00:00
Mark Olesen
000f704e08 ENH: FixedList empty(), size(), max_size() now constexpr static (#1160)
- this allows their use as templates parameters
2019-01-10 09:35:41 +01:00
Mark Olesen
7720b59066 ENH: add dimensionSet provisioning for a dimensioned clip() method
- use file-local function to reduce some code clutter
2019-01-09 23:44:17 +01:00
Mark Olesen
cf8d500f8c ENH: export FOAM_API in dictionary (issue #1158)
- uses the value of foamVersion::api, which should be reliable.
2019-01-07 19:04:50 +01:00
Mark Olesen
2067014079 ENH: minor consistency improvements for bounding box
- a valid() method (same as !empty() call) for consistency with other
  containers and data types

- a centre() method (same as midpoint() method) for consistency with
  other OpenFOAM geometric entities
2019-01-09 09:32:23 +01:00
Mark Olesen
a0a7da2edd ENH: Pair, Tuple2 improvements (#1160)
- move constructors, construct from std::pair
- input/output of std::pair

Makes it easier when using data structures for other codes.
2019-01-08 22:16:41 +01:00
Mark Olesen
907dd6d49f STYLE: consistent indentation and template parameters for FixedList 2019-01-08 21:50:12 +01:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
Mark Olesen
22b659d7c0 ENH: export FOAM_API in dictionary (issue #1158)
- uses the value of foamVersion::api, which should be reliable.
2019-01-07 19:04:50 +01:00
Mark Olesen
0dbd05daa4 STYLE: minor adjustment of test case 2019-01-03 19:16:13 +01:00
Mark Olesen
6a448016aa ENH: additional read guards for dimensionedType. input consistency (#762, #1148)
- provide a lookupOrDefault constructor form, since this is a fairly
  commonly used requirement and simplifies the calling sequence.

  Before

      dimensionedScalar rhoMax
      (
          dimensionedScalar::lookupOrDefault
          (
              "rhoMax",
              pimple.dict(),
              dimDensity,
              GREAT
          )
     );

  After

      dimensionedScalar rhoMax("rhoMax", dimDensity, GREAT, pimple.dict());

- read, readIfPresent methods with alternative lookup names.

- Mark the Istream related constructors with compile-time deprecated
  warnings.

BUG: read, readIfPresent methods not handling optional dimensions (#1148)
2019-01-03 13:34:11 +01:00
Mark Olesen
af310075a0 ENH: handle dimensions in dimensioned<Type>::lookupOrAddToDict (#1116) 2019-01-03 01:30:27 +01:00
Mark Olesen
3560884abe ENH: allow direct testing of HashTable iterator as a bool
- can be used as a more natural test on the iterator.
  For example, with

     HashTable<..> table;
     auto iter = table.find(...);

  Following are now all equivalent:

    1.  if (iter != table.end()) ...
    2.  if (iter.found()) ...
    3.  if (iter) ...
2018-12-20 18:03:16 +01:00
Mark Olesen
08335beb6f ENH: add get() accessor to tmp classes
- similar to autoPtr and unique_ptr. Returns the pointer value without
  any checks. This provides a simple way for use to use either
  an autoPtr or a tmp for local memory management without accidentally
  stealing the pointer.

  Eg,

     volVectorField* ptr;
     tmp<volVectorField> tempField;

     if (someField.valid())
     {
         ptr = someField.get();
     }
     else
     {
         tempField.reset(new volVectorField(....));
         ptr = tmpField.get();
     }

     const volVectorField& withField = *ptr;

STYLE: make more tmp methods noexcept
2018-12-20 17:29:51 +01:00
Andrew Heather
9231534efa STYLE: Updating version to v1812 2018-12-19 18:07:52 +00:00
Mark Olesen
455c8ef540 ENH: simplify use of case-relative paths
- provide relativePath() for argList and for Time.
  These are relative to the case globalPath().
  Eg,

     Info<< "output: " << runTime.relativePath(outputFile) << nl;
2018-12-15 13:26:55 +01:00
Mark Olesen
2617c326d8 ENH: extend fileName::relative() method
- optionally replace stripped parent directory with the \<case\> shortcut

    "/this/path/and/subdirs/name"

    relative("/this/path")        -> "and/subdirs/name"
    relative("/this/path", true)  -> "\<case\>/and/subdirs/name"
2018-12-14 17:44:07 +01:00
Mark Olesen
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
Mark Olesen
5d9e278e92 ENH: consolidate handling of mandatory/optional command arguments
- for some special cases we wish to mark command-line arguments as
  being optional, in order to do our own treatment. For example,
  when an arbitrary number of arguments should be allowed.

  Now tag this situation with argList::noMandatoryArgs().
  The argList::argsMandatory() query can then be used in any further
  logic, including the standard default argument checking.

- with the new default check, can consolidate the special-purpose

      "setRootCaseNonMandatoryArgs.H"

  into the regular

      "setRootCase.H"

- revert to a simple "setRootCase.H" and move all the listing related
  bits to a "setRootCaseLists.H" file. This leaves the information
  available for solvers, or whoever else wishes, without being
  introduced everywhere.

- add include guards and scoping to the listing files and rename to
  something less generic.

     listOptions.H -> setRootCaseListOptions.H
     listOutput.H  -> setRootCaseListOutput.H
2018-12-13 01:45:09 +01:00
Mark Olesen
172c36c29a ENH: support search modes for etcFiles()
- similar to the foamEtcFile script -mode=... option, the specific
  search location (user/group/other) can now also specified for
  string expansions and as a numerical value for etcFile()

  For example, if searching for group or other (project) controlDict,
  but not wishing to see the user controlDict:

    1.  foamEtcFile -mode=go controlDict

    2.  fileName dictFile("<etc:go>/controlDict");
        dictFile.expand();

    3.  etcFile(controlDict, false, 0077);

  The default behaviour for searching all contexts is unchanged.

    1.  foamEtcFile controlDict

    2.  fileName dictFile("<etc>/controlDict");
        dictFile.expand();

    3.  etcFile(controlDict);
2018-12-12 13:45:32 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
5e4d7386ec ENH: use foamVersion::api internally in etcFiles searching (#1010)
- prefer this to using the OPENFOAM define since this improves the
  internal consistency with the build information.

  The API information could change between builds without the
  etcFiles.C being recompiled whereas the value of
  Foam::foamVersion::api is force updated during the build (triggers
  recompilation of globals.Cver)
2018-12-08 17:42:31 +01:00
Mark Olesen
bff16a0ddc STYLE: additional comments in Test-decomposePar 2018-12-05 08:42:55 +01:00
Mark Olesen
b8c257d6ad CONFIG: adjustments to environment
- provide default WM_DIR if not already set, to improve robustness if a
  reduced environment is used

- add etc/ to WM_PROJECT_SITE search. This makes the site directory
  structure consistent with the OpenFOAM structure.
  Eg,

      WM_PROJECT_SITE/etc/..
      WM_PROJECT_SITE/bin/..
      WM_PROJECT_SITE/platforms/..

- Don't set/export WM_OSTYPE.  The default is POSIX and is properly
  defaulted throughout, including in CMakeLists-OpenFOAM.txt (also for
  Catalyst)
2018-12-03 09:50:48 +01:00
Mark Olesen
4b7e11fc8b COMP: adjust headers for more detailed build info in the future (issue #1010)
- this splits a larger changeset for a gradual implementation
2018-11-29 21:01:01 +01:00
Mark Olesen
b81420e524 ENH: additional variants of IOobjectList findObject()
- cfindObject() for const pointer access.

- getObject() for mutable non-const pointer access, similar to the
     objectRegistry::getObjectPtr()

- cfindObject(), findObject(), getObject() with template type access
  to also check the headerClassName.

  For example,

      cfindObject("U")  ->  good
      cfindObject<volVectorField>("U") -> good
      cfindObject<volScalarField>("U") -> nullptr

  This allows inversion of looping logic.

    1) Obtain the names for a particular Type

       for (const word& objName : objs.sortedNames<Type>())
       {
           const IOobject* io = objs[objName];
           ...
       }

    2) Use previously obtained names and apply to a particular Type

       for (const word& objName : someListOfNames)
       {
           const IOobject* io = objs.cfindObject<Type>(objName);
           if (io)
           {
               ...
           }
       }
2018-11-28 11:28:38 +01:00
Mark Olesen
f78aa8e342 ENH: added Ostream fill() methods and corresponding IOmanip setfill()
- useful when generating formatted output such as tables.
2018-11-25 14:17:55 +01:00
Mark Olesen
0e47b0717d ENH: vtk::seriesWriter to encapsulate writing file series (issue #926) 2018-10-02 14:06:34 +02:00
Mark Olesen
42009c168e ENH: vtk::vtmWriter for generating vtkMultiBlockDataSet (.vtm) (issue #926)
- Provides a means of accumulating file entries for generating vtm
  by accumulate blocks, datasets and writing them later.

  Only a single block depth is currently supported and the methods
  are kept fairly simple.
2018-10-02 12:53:01 +02:00
Mark Olesen
1456a8ca1d STYLE: emit warning about using deprecated "~OpenFOAM" expansion
- Within strings it is preferable to use the "<etc>" instead.
  Most use cases for the old "~OpenFOAM" expansion have been obsoleted
  by the #includeEtc directive.
2018-11-23 13:12:33 +01:00
Mark Olesen
ac03307258 ENH: improve consistency in version handling (issue #1010)
- use std::string instead of c-string for the string constants

- centralize some definitions of resources into foamVersion.H

  Now expose some of the hard-coded values used in foamEtcFiles()
  so that they can be known or even overridden as required.

  Relocate to src/OpenFOAM/include as a constant location.
2018-11-23 11:08:36 +01:00
Mark Olesen
45d5d7bbc1 COMP: add minimal test application
- uses wmake, without OpenFOAM libraries.

  The application and libray serve as a minimal test case for wmake,
  but can also be used to generate a minimal library/executable pair
  target for testing of packaging etc.
2018-11-23 00:21:10 +01:00
Mark Olesen
083e9e9665 ENH: isolate version information in foamVersion names instead of globals
- For compatibility, access to the old global names is provided via
  macros
        #define FOAMversion     foamVersion::version
        #define FOAMbuild       foamVersion::build
        #define FOAMbuildArch   foamVersion::buildArch

- this isolation makes it easier to provide additional scoped methods
  for dealing with version related information.  Eg, printBuildInfo()
2018-11-22 11:50:24 +01:00
Mark Olesen
5a9a2935ad ENH: modernize code in dimensionSet, dimensionSets
- 'unfriend' operators on dimensionSet, since they operate without
  requiring access to non-public members.

- add missing invTransform() function for dimensionSet.

- make inv(const dimensionSet&) available as
  operator~(const dimensionSet&), which can be used instead
  of (dimless/ds).
2018-11-20 18:16:17 +01:00
Mark Olesen
72c4b3186b ENH: added dimensionedType::writeEntry method
- writing of dictionary entry with the name of the dimensionedType
  suppressed if it is identical to the keyword.
  This corresponds to the input requirements.
2018-11-20 16:26:44 +01:00
Mark Olesen
dd87c98393 ENH: add read guard for dimensionedType constructors (#762)
- deprecate dimensionedType constructors using an Istream in favour of
  versions accepting a keyword and a dictionary.

  Dictionary entries are almost the exclusive means of read
  constructing a dimensionedType. By construct from the dictionary
  entry instead of doing a lookup() first, we can detect possible
  input errors such as too many tokens as a result of a input syntax
  error.

  Constructing a dimensionedType from a dictionary entry now has
  two forms.

  1.  dimensionedType(key, dims, dict);

      This is the constructor that will normally be used.

      It accepts entries with optional leading names and/or
      dimensions. If the entry contains dimensions, they are
      verified against the expected dimensions and an IOError is
      raised if they do not correspond. On conclusion, checks the
      token stream for any trailing rubbish.

  2.  dimensionedType(key, dict);

      This constructor is used less frequently.

      Similar to the previous description, except that it is initially
      dimensionless. If entry contains dimensions, they are used
      without further verification. The constructor also includes a
      token stream check.

      This constructor is useful when the dimensions are entirely
      defined from the dictionary input, but also when handling
      transition code where the input dimensions are not obvious from
      the source.

      This constructor can also be handy when obtaining values from
      a dictionary without needing to worry about the input dimensions.
      For example,

         Info<< "rho: " << dimensionedScalar("rho", dict).value() << nl;

      This will accept a large range of inputs without hassle.

ENH: consistent handling of dimensionedType for inputs (#1083)

BUG: incorrect Omega dimensions (fixes #2084)
2018-11-20 15:14:10 +01:00
Mark Olesen
4bf4b89af4 ENH: support scalar predicates and lists of scalar predicates (#1056) 2018-11-13 14:12:53 +01:00
Mark Olesen
1883a872a1 STYLE: adds comments in empty Make/options files
- easier when making modifications

STYLE: spelling in topoSetSource comments
2018-11-13 15:21:13 +01:00
Mark Olesen
8752120ad5 COMP: use hard-coded values for fieldTypes (issue #1068)
- this seems to be the only reliable means of obtaining the values.

  Using typeName_() yields the wrong value.

  Using the typeName causes initialization issues
  (segfault when executing on some systems).
2018-11-12 16:39:55 +01:00
Mark Olesen
90dd4b30cd TUT: syntax typo (#1059) 2018-11-12 13:59:38 +01:00
Mark Olesen
9bc61e5f41 ENH: improve IOobjectList name filtering
- support name filtering by class based on <Type> or predicates.
  Eg,

      objects.sortedNames<volScalarField>(namePattern);
  vs  objects.sortedNames(volScalarField::typeName, namePattern);

  These can also be used directly for untyped name matching.
  Eg,
      objects.sortedNames<void>(namePattern);

  Can also use a predicate:

      objects.sortedNames(wordRe("vol.*Field"), namePattern);
      objects.sortedNames
      (
          [](const word& clsName){ return clsName.startsWith("vol"); },
          namePattern
      );
2018-11-12 08:55:45 +01:00
Mark Olesen
f94d724a93 ENH: add objectRegistry::count() methods
- can be useful for obtaining information about number of fields.
  Eg,

       nScalar = mesh.count<volScalarField>(wordre);
2018-11-11 19:00:54 +01:00
Mark Olesen
4965ea4988 ENH: simplify/extend objectRegistry code with templated predicates
- replace explicit use of wordRe, wordRes, wordHashSet as filters
  with a MatchPredicate.

- support filtering by class based on <Type> or predicates
2018-11-10 17:20:32 +01:00
Mark Olesen
faaa93fdb5 ENH: add IOobjectList::findObject() method
- naming similar to objectRegistry, with unambiguous resolution.
  The lookup() methods have different return types depending on the
  calling parameter.

STYLE: use IOobjectListTemplates.C for implementations

- previously included as local definition within IOobjectList.C,
  but will be adding more templated methods soon.

- adjust parameters (eg, matchName instead of matcher) to show their
  function

ENH: handle objectRegistry::names<void>(...)

- this is equivalent to no Type restriction, and can be used when
  filtering names. Eg,

     obr.names<void>(wordRe..);
2018-11-09 21:57:55 +01:00
Mark Olesen
91cfe4c271 ENH: add wordRes::matching() method
- returns indices of matching entries.
2018-11-09 21:21:15 +01:00
Mark Olesen
6f3471d5fb STYLE: protect and comment test of illegal access (#1066) 2018-11-08 14:46:35 +01:00
Mattijs Janssens
c20b12b62f Feature patch function1 2018-10-29 09:44:31 +00:00
Mark Olesen
07dafe7b0b STYLE: use range-for when looping dictionary entries.
- as part of the cleanup of dictionary access methods (c6520033c9)
  made the dictionary class single inheritance from IDLList<entry>.

  This eliminates any ambiguities for iterators and allows
  for simple use of range-for looping.

  Eg,
      for (const entry& e : topDict))
      {
          Info<< "entry:" << e.keyword() << " is dict:" << e.isDict() << nl;
      }

   vs

      forAllConstIter(dictionary, topDict, iter))
      {
          Info<< "entry:" << iter().keyword()
              << " is dict:" << iter().isDict() << nl;
      }
2018-10-19 13:08:24 +02:00
Mark Olesen
3b74512231 ENH: cleanup of Enum class
- more dictionary-like methods, enforce keyType::LITERAL for all
  lookups to avoid any spurious keyword matching.

- new readEntry, readIfPresent methods

- The get() method replaces the now deprecate lookup() method.

- Deprecate lookupOrFailsafe()
  Failsafe behaviour is now an optional parameter for lookupOrDefault,
  which makes it easier to tailor behaviour at runtime.

- output of the names is now always flatted without line-breaks.
  Thus,

     os << flatOutput(someEnumNames.names()) << nl;
     os << someEnumNames << nl;

  both generate the same output.

- Constructor now uses C-string (const char*) directly instead of
  Foam::word in its initializer_list.

- Remove special enum + initializer_list constructor form since
  it can create unbounded lookup indices.

- Removd old hasEnum, hasName forms that were provided during initial
  transition from NamedEnum.

- Added static_assert on Enum contents to restrict to enum or
  integral values.  Should not likely be using this class to enumerate
  other things since it internally uses an 'int' for its values.

  Changed volumeType accordingly to enumerate on its type (enum),
  not the class itself.
2018-10-18 12:57:32 +02:00
Mark Olesen
e0255cfff2 ENH: add compareOp for three-way comparison
- similar to the \c <=> operator in C++20.
  Primarily for use when defining cascaded sort function objects.
2018-10-17 09:29:28 +02:00
Mark Olesen
8b569b16d1 STYLE: logical ops return bool (issue #1043)
- these currently only with bool parameters, but the return value should
  nonetheless always be a bool value:

      andOp(), orOp(), lessOp(), lessEqOp(), greaterOp(), greaterEqOp()

- renamed the unused eqEqOp() to equalOp() for naming consistency with
  the equal() global function.

ENH: equalOp() specialization for scalars

- function object version of the equal() function.
  The default constructor uses the same tolerance (VSMALL),
  but can also supply an alternative tolerance on construction.
2018-10-17 07:59:26 +02:00
Mark Olesen
0a0fee88a0 STYLE: update fileName docs and minor code cleanup 2018-10-16 23:03:38 +02:00
Mark Olesen
77017e58f4 ENH: support token stream checking to entry (issue #762)
- Eg,
    scalar val(-GREAT);

    const entry* eptr = dict.findEntry(k);

    if (eptr)
    {
        val = eptr.get<scalar>();

        // Or
        eptr.readEntry(val);
    }
2018-10-16 11:13:35 +02:00
Mark Olesen
7864672c78 ENH: make cwd() behaviour user-adjustable (issue #1007)
- with the 'cwd' optimization switch it is possible to select the
  preferred behaviour for the cwd() function.

  A value of 0 causes cwd() to return the physical directory,
  which is what getcwd() and `pwd -P` return.
  Until now, this was always the standard behaviour.

  With a value of 1, cwd() instead returns the logical directory,
  which what $PWD contains and `pwd -L` returns.
  If any of the sanity checks fail (eg, PWD points to something other
  than ".", etc), a warning is emitted and the physical cwd() is
  returned instead.

  Apart from the optical difference in the output, this additional
  control helps workaround file systems with whitespace or other
  characters in the directory that normally cause OpenFOAM to balk.
  Using a cleaner symlink elsewhere should skirt this issue.

  Eg,
      cd $HOME
      ln -s "/mounted volume/user/workdir"  workdir
      cd workdir
      # start working with OpenFOAM
2018-10-16 01:30:44 +02:00
Mark Olesen
c6520033c9 ENH: rationalize dictionary access methods
- use keyType::option enum to consolidate searching options.
  These enumeration names should be more intuitive to use
  and improve code readability.

    Eg,   lookupEntry(key, keyType::REGEX);
    vs    lookupEntry(key, false, true);

  or

    Eg,   lookupEntry(key, keyType::LITERAL_RECURSIVE);
    vs    lookupEntry(key, true, false);

- new findEntry(), findDict(), findScoped() methods with consolidated
  search options for shorter naming and access names more closely
  aligned with other components. Behave simliarly to the
  methods lookupEntryPtr(), subDictPtr(), lookupScopedEntryPtr(),
  respectively. Default search parameters consistent with lookupEntry().

    Eg, const entry* e = dict.findEntry(key);
    vs  const entry* e = dict.lookupEntryPtr(key, false, true);

- added '*' and '->' dereference operators to dictionary searchers.
2018-10-15 16:16:12 +02:00
Mark Olesen
8eddcc072a ENH: avoid readScalar, readLabel etc from dictionary (#762, #1033)
- use the dictionary 'get' methods instead of readScalar for
  additional checking

     Unchecked:  readScalar(dict.lookup("key"));
     Checked:    dict.get<scalar>("key");

- In templated classes that also inherit from a dictionary, an additional
  'template' keyword will be required. Eg,

     this->coeffsDict().template get<scalar>("key");

  For this common use case, the predefined getXXX shortcuts may be
  useful. Eg,

     this->coeffsDict().getScalar("key");
2018-10-12 08:14:47 +02:00
Mattijs Janssens
fdf19d67a4 Merge branch 'feature-coordinateSystem' into 'develop'
coordinate system improvements

See merge request Development/OpenFOAM-plus!211
2018-10-11 16:32:03 +01:00
Mark Olesen
a77ab5d4eb STYLE: relocate distributed flag into ParRunControl
- adjust member order in TimePaths to better packing
2018-10-11 09:12:01 +02:00
Mark Olesen
f7c85b034b STYLE: clearer handling of argList -case internals (issue #1037) 2018-10-11 08:32:43 +02:00
Mark Olesen
2cd2732fed ENH: avoid change when setting UPtrList twice (issue #1035)
UPtrList::set(const label i, T* ptr);

No-op if the new pointer value is identical to the current content.
This avoid memory management issues.
2018-10-09 08:27:50 +02:00
Mark Olesen
3b77493abc ENH: wordRes matcher method that distinguishes literal vs. regex
- useful for customizing the behaviour of white/black lists depending
  on the type of the match.
2018-10-07 18:30:33 +02:00
Mark Olesen
501326b27a ENH: additional constructor and methods for regionProperties
- can now construct with READ_IF_PRESENT and use count() to determine
  if it was loaded. names() and sortedNames() for a collected overview.
2018-10-01 16:01:02 +02:00
Mark Olesen
8548009eee ENH: generalize instant to be templated, movable, etc
- allows reuse for other purposes
2018-10-03 14:05:45 +02:00
Mark Olesen
6c91048e8b ENH: fileName hasPath(), removePath() methods
- improved move constructors/assignments for fileName, string, etc
2018-10-03 14:05:45 +02:00
Mark Olesen
6697bb4735 ENH: improve, simplify, rationalize coordinate system handling (issue #863)
Previously the coordinate system functionality was split between
coordinateSystem and coordinateRotation. The coordinateRotation stored
the rotation tensor and handled all tensor transformations.

The functionality has now been revised and consolidated into the
coordinateSystem classes. The sole purpose of coordinateRotation
is now just to provide a selectable mechanism of how to define the
rotation tensor (eg, axis-angle, euler angles, local axes) for user
input, but after providing the appropriate rotation tensor it has
no further influence on the transformations.

--

The coordinateSystem class now contains an origin and a base rotation
tensor directly and various transformation methods.

  - The origin represents the "shift" for a local coordinate system.

  - The base rotation tensor represents the "tilt" or orientation
    of the local coordinate system in general (eg, for mapping
    positions), but may require position-dependent tensors when
    transforming vectors and tensors.

For some coordinate systems (currently the cylindrical coordinate system),
the rotation tensor required for rotating a vector or tensor is
position-dependent.

The new coordinateSystem and its derivates (cartesian, cylindrical,
indirect) now provide a uniform() method to define if the rotation
tensor is position dependent/independent.

The coordinateSystem transform and invTransform methods are now
available in two-parameter forms for obtaining position-dependent
rotation tensors. Eg,

      ... = cs.transform(globalPt, someVector);

In some cases it can be useful to use query uniform() to avoid
storage of redundant values.

      if (cs.uniform())
      {
          vector xx = cs.transform(someVector);
      }
      else
      {
          List<vector> xx = cs.transform(manyPoints, someVector);
      }

Support transform/invTransform for common data types:
   (scalar, vector, sphericalTensor, symmTensor, tensor).

====================
  Breaking Changes
====================

- These changes to coordinate systems and rotations may represent
  a breaking change for existing user coding.

- Relocating the rotation tensor into coordinateSystem itself means
  that the coordinate system 'R()' method now returns the rotation
  directly instead of the coordinateRotation. The method name 'R()'
  was chosen for consistency with other low-level entities (eg,
  quaternion).

  The following changes will be needed in coding:

      Old:  tensor rot = cs.R().R();
      New:  tensor rot = cs.R();

      Old:  cs.R().transform(...);
      New:  cs.transform(...);

  Accessing the runTime selectable coordinateRotation
  has moved to the rotation() method:

      Old:  Info<< "Rotation input: " << cs.R() << nl;
      New:  Info<< "Rotation input: " << cs.rotation() << nl;

- Naming consistency changes may also cause code to break.

      Old:  transformVector()
      New:  transformPrincipal()

  The old method name transformTensor() now simply becomes transform().

====================
  New methods
====================

For operations requiring caching of the coordinate rotations, the
'R()' method can be used with multiple input points:

       tensorField rots(cs.R(somePoints));

   and later

       Foam::transformList(rots, someVectors);

The rotation() method can also be used to change the rotation tensor
via a new coordinateRotation definition (issue #879).

The new methods transformPoint/invTransformPoint provide
transformations with an origin offset using Cartesian for both local
and global points. These can be used to determine the local position
based on the origin/rotation without interpreting it as a r-theta-z
value, for example.

================
  Input format
================

- Streamline dictionary input requirements

  * The default type is cartesian.
  * The default rotation type is the commonly used axes rotation
    specification (with e1/e2/3), which is assumed if the 'rotation'
    sub-dictionary does not exist.

    Example,

    Compact specification:

        coordinateSystem
        {
            origin  (0 0 0);
            e2      (0 1 0);
            e3      (0.5 0 0.866025);
        }

    Full specification (also accepts the longer 'coordinateRotation'
    sub-dictionary name):

        coordinateSystem
        {
            type    cartesian;
            origin  (0 0 0);

            rotation
            {
                type    axes;
                e2      (0 1 0);
                e3      (0.5 0 0.866025);
            }
        }

   This simplifies the input for many cases.

- Additional rotation specification 'none' (an identity rotation):

      coordinateSystem
      {
          origin  (0 0 0);
          rotation { type none; }
      }

- Additional rotation specification 'axisAngle', which is similar
  to the -rotate-angle option for transforming points (issue #660).
  For some cases this can be more intuitive.

  For example,

      rotation
      {
          type    axisAngle;
          axis    (0 1 0);
          angle   30;
      }
  vs.
      rotation
      {
          type    axes;
          e2      (0 1 0);
          e3      (0.5 0 0.866025);
      }

- shorter names (or older longer names) for the coordinate rotation
  specification.

     euler         EulerRotation
     starcd        STARCDRotation
     axes          axesRotation

================
  Coding Style
================
- use Foam::coordSystem namespace for categories of coordinate systems
  (cartesian, cylindrical, indirect). This reduces potential name
  clashes and makes a clearer declaration. Eg,

      coordSystem::cartesian csys_;

  The older names (eg, cartesianCS, etc) remain available via typedefs.

- added coordinateRotations namespace for better organization and
  reduce potential name clashes.
2018-10-01 13:54:10 +02:00
Mark Olesen
7d88075842 ENH: dictionary lookup with detection of zero tokens (#1033)
- the opposite problem from issue #762. Now we also test if the input
  token stream had any tokens at all.

- called by the dictionary get<> and readEntry() methods.
2018-10-05 09:56:17 +02:00
Mark Olesen
4a61042f3f ENH: add column access and other methods for Tensor
- Can now retrieve or set a column/row of a tensor.
  Either compile-time or run-time checks.

  Get
     t.col<1>();   t.col(1);
     t.row<1>();   t.row(1);

  Set
     t.col<1>(vec);   t.col(1,vec);
     t.row<1>(vec);   t.row(1,vec);

  The templated versions are compile-time checked

     t.col<3>();
     t.col<3>(vec);

  The parameter versions are run-time checked

     t.col(3);
     t.col(3,vec);

ENH: provide named access to tensor/tensor inner product as inner()
2018-09-28 11:20:31 +02:00
Mark Olesen
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
Mark Olesen
12c903bba8 ENH: define nameOp<>, typeOp<>, sizeOp<> functors (issue #1013) 2018-09-19 15:32:04 +02:00
Andrew Heather
d3812b9b69 Merge remote-tracking branch 'origin/master' into develop 2018-08-29 13:51:40 +01:00
Will Bainbridge
5e7a766159 BUG: cubicEqn, quadraticEqn: Correction to repeated roots
Also extended the cubic equation test routine and modified the error
methods so that they more accurately generate the round of error of
evaluation.

This resolves bug report https://bugs.openfoam.org/view.php?id=3015
2018-07-24 15:54:32 +01:00
Andrew Heather
6e35bcda70 ENH: Updated config for release v1806 2018-06-28 12:56:00 +01:00
Mark Olesen
be07fc9bbe STYLE: some test apps compiling into wrong location (issue #876) 2018-06-27 10:31:35 +02:00
Mark Olesen
30b4eda7a4 TUT: update some old keywords found in tutorials
- functionObjectLibs -> libs
- redirectType -> name
- change deprecated writeCompression flags types to Switch.

- cleanup some trailing ';;' from some dictionaries
2018-06-26 14:18:52 +02:00
Mark Olesen
62b83a76a4 ENH: face, triFace sign() method analogous to plane
- a quick test for which side of the face a point is located
2018-08-14 10:08:22 +02:00
Mark Olesen
b41d5ed523 STYLE: remove deprecated constraints format from tutorials 2018-07-11 17:02:40 +02:00
Mark Olesen
ae36f5f504 ENH: change argList get<> and getList<> from read<>, readList<>
- more consistent with dictionary method naming. The get<> or
  getList<> returns a value, doesn't read into a existing location.
2018-08-09 11:27:36 +02:00
Mark Olesen
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
Mark Olesen
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
Mark Olesen
822acaf6ef ENH: make indices for boundBox::add() a templated parameter
- allows use with any container with begin(), end() and where the
  "*iterator" dereference returns a label, which is used for indexing
  into the list of points.
  This container could be labelUList, bitSet, labelHashSet, etc
2018-08-07 22:23:16 +02:00
Mark Olesen
0e996431b7 STYLE: relocate STRING_QUOTE macro to macros.H 2018-08-02 16:26:25 +02:00
Mark Olesen
9be9f02a12 ENH: bitSet, PackedList copy construct a subset
Eg,
    processorPolyPatch pp = ...;

    UOPstream toNbr(pp.neighbProcNo(), pBufs);
    toNbr << PackedList<Width>(faceValues, pp.range());
2018-08-01 17:54:53 +02:00
Mark Olesen
80f4ff87dd ENH: allow use of FixedList<label,N> for bitSet construct/set/unset
- allows direct 'hashing' of fixed lists. Eg, triFace
2018-08-01 13:01:43 +02:00
Mark Olesen
35facb8208 ENH: add PackedList::unpack() method
- allows for simpler unpacking of a full list, or list range into any
  sufficiently large integral type.

  For example,
    processorPolyPatch pp = ...;

    UOPstream toNbr(pp.neighbProcNo(), pBufs);
    toNbr << faceValues.unpack<char>(pp.range());
2018-08-01 12:48:35 +02:00
Mark Olesen
215570915e ENH: explicit convert to bool operator for autoPtr
- behaves the same as the valid() method, but can be queried directly
  like a normal raw pointer and as per std::unique_ptr.
  Eg,

      autoPtr<T> ptr = ...

      if (ptr) ...
2018-07-30 14:33:22 +02:00
Bernhard Gschaider
b5f093076b STYLE: add sigFpe test 2018-07-30 12:13:42 +02:00
Mark Olesen
a5e5ba3179 ENH: add bitSet-type of methods for boolList
- test(), get(), set(), unset() with behaviour as per bitSet,
  to allow easier swapping out of boolList <-> bitSet.
2018-07-27 15:51:19 +02:00
Mark Olesen
db9cd2bc85 ENH: add IOobjectList append() method for building larger lists
- supports copy append and move append
2018-07-27 15:38:32 +02:00
Mark Olesen
fe808e24e7 ENH: add rpmToRads() convenience functions
- simplifies conversion of RPM to radians/sec for const variables
2018-07-23 22:20:26 +02:00
mattijs
423ed38986 COMP: rigidBodyDynamics: add Time& argument to make them compile 2018-07-19 18:03:10 +01:00
Mark Olesen
ca2a83d532 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-06-20 01:56:41 +02:00
Mark Olesen
8295d398aa BUG: accessing invalid coordinateRotation after move assignment (fixes #884)
- incorrect coordinateSystem clear() after the move

- add Test-coordinateSystem
2018-06-19 21:24:38 +02:00
Mark Olesen
f9fe71815a STYLE: consistent use of '= delete' for removed constructors/assignments
- make the purpose more explicit, and reduces some work for the
  compiler as well.
2018-05-30 12:03:17 +02:00
Mark Olesen
6b6b36afd3 STYLE: revert bitSet/HashSet setMany() to set() method (issue #837)
- improves backward compatibility and more naming consistency.
  Retain setMany(iter1, iter2) to avoid ambiguity with the
  PackedList::set(index, value) method.
2018-05-29 17:38:02 +02:00
Mark Olesen
d318a630b6 ENH: add directive '#sinclude' (or '#includeIfPresent' as long name)
- consistency with make and more succinct.

- reduce code duplication in findEtcFiles.
2018-05-28 13:38:03 +02:00
Mark Olesen
48d654cf19 ENH: avoid memory leaks for HashPtrTable, PtrMap insertion (issue #749)
- disallow insert() of raw pointers, since a failed insertion
  (ie, entry already existed) results in an unmanaged pointer.

  Either insert using an autoPtr, or set() with raw pointers or autoPtr.

- IOobjectList::add() now takes an autoPtr instead of an object reference

- IOobjectList::remove() now returns an autoPtr instead of a raw pointer
2018-05-17 09:56:36 +01:00
Mark Olesen
0ea44eda59 ENH: bitSet::find_first_not() method (issue #751)
- find the position of the first bit off - symmetrical with find_first()
2018-05-02 08:33:49 +02:00
Mark Olesen
dd8341f659 ENH: make format of ExecutionTime = ... output configurable (issue #788)
- controlled by the the 'printExecutionFormat' InfoSwitch in
  etc/controlDict

      // Style for "ExecutionTime = " output
      // - 0 = seconds (with trailing 's')
      // - 1 = day-hh:mm:ss

   ExecutionTime = 112135.2 s  ClockTime = 113017 s

   ExecutionTime = 1-07:08:55.20  ClockTime = 1-07:23:37

- Callable via the new Time::printExecutionTime() method,
  which also helps to reduce clutter in the applications.
  Eg,

     runTime.printExecutionTime(Info);

  vs

     Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
         << "  ClockTime = " << runTime.elapsedClockTime() << " s"
         << nl << endl;

--

ENH: return elapsedClockTime() and clockTimeIncrement as double

- previously returned as time_t, which is less portable.
2018-04-27 15:00:34 +02:00
Mark Olesen
10b69fa2b4 ENH: ListOp::inplaceMapValue using a Map<label> for the mapping.
For example, with some HashTable or Map container of models

    { model0 => 1, model1 => 4, model2 => 5, model3 => 12, model4 => 15, }

specify the remapping

    Map<label> mapper({{1, 3}, {2, 6}, {3, 12}, {5, 8}});

inplaceMapValue(mapper, models) then yields

    { model0 => 3, model1 => 4, model2 => 8, model3 => 12, model4 => 15, }

--

ENH: extend bitSet::count() to optionally count unset bits instead.

--

ENH: BitOps compatibility methods for boolList.

- These ease coding that uses a boolList instead of bitSet and use
  short-circuit logic when possible.

  Eg, when 'bitset' and 'bools' contain the same information

      bitset.count()  <->  BitOps::count(bools)
      bitset.all()    <->  BitOps::all(bools)
      bitset.any()    <->  BitOps::any(bools)
      bitset.none()   <->  BitOps::none(bools)

  These methods can then be used directly in parameters or in logic.
  Eg,

      returnReduce(bitset.any(), orOp<bool>());
      returnReduce(BitOps::any(bools), orOp<bool>());

      if (BitOps::any(bools)) ...
2018-04-27 10:43:32 +02:00
Mark Olesen
c0766ce8ea STYLE: consistent '// End namespace' markers 2018-04-27 09:51:35 +02:00
Andrew Heather
e6787bfa9a Merge branch 'feature-bitset' into 'develop'
ENH: new bitSet class and improved PackedList class (closes #751)

See merge request Development/OpenFOAM-plus!200
2018-04-25 11:39:59 +01:00
Mark Olesen
2fde6c3ab0 ENH: improve handling of mismatched brackets, forgotten ';' (issue #762)
- flags the following type of problems:

  * mismatches:

        keyword  mismatch ( set of { brackets ) in the } entry;

  * underflow (too many closing brackets:

        keyword  too many ( set of ) brackets ) in ) entry;

- a missing semi-colon

        dict
        {
           keyword  entry with missing semi-colon
        }

  will be flagged as 'underflow', since it parses through the '}' but
  did not open with it.

Max monitoring depth is 60 levels of nesting, to avoid incurring any
memory allocation.
2018-04-25 09:55:00 +02:00
Mark Olesen
672f0574e2 COMP: resolve signed/unsigned long ambiguity on Darwin 2018-04-24 13:17:22 +02:00
Andrew Heather
a230e8d408 STYLE: Correcting typos 2018-03-28 17:14:16 +01:00
Mark Olesen
ea71484efa ENH: add alternative STL ASCII parsers
- In addition to the traditional Flex-based parser, added a Ragel-based
  parser and a handwritten one.

  Some representative timings for reading 5874387 points (1958129 tris):

      Flex   Ragel   Manual
      5.2s   4.8s    6.7s         total reading time
      3.8s   3.4s    5.3s         without point merging
2018-04-16 10:20:45 +02:00
Mark Olesen
a8da75d27e STYLE: support wordRe ICASE enum
- better naming consistency with std::regex_constants::icase

- deprecate older NOCASE, but leave supported
2018-04-13 10:42:42 +02:00
Mark Olesen
5f88e4271e ENH: allow "<case>", "<system>" ... in the string expansions (issue #792)
- the expansions were previously required as slash to follow, but
  now either are possible.

    "<case>", "<case>/" both yield the same as "$FOAM_CASE" and
    will not have a trailing slash in the result. The expansion of
    "$FOAM_CASE/" will however have a trailing slash.

- adjust additional files using these expansions
2018-04-11 23:10:49 +02:00
Mark Olesen
fc5895f1df STYLE: rename toLabel, toLabelRange classes -> labelOp, labelRangeOp
- make purpose as functors _slightly_ clearer.

- base definition removed for stricter enforcement of the specialization
  requirement.
2018-04-11 22:48:03 +02:00
Mark Olesen
a9741cea79 ENH: additional text expansion shortcuts (issue #792)
Support the following expansions when they occur at the start of a
string:

    Short-form       Equivalent
    =========       ===========
      <etc>/          ~OpenFOAM/   (as per foamEtcFile)
      <case>/         $FOAM_CASE/
      <constant>/     $FOAM_CASE/constant/
      <system>/       $FOAM_CASE/system/

These can be used in fileName expansions to improve clarity and reduce
some typing

     "<constant>/reactions"   vs  "$FOAM_CASE/constant/reactions"
2018-04-10 13:41:41 +02:00
Mark Olesen
b85d0b5cb7 ENH: provide Rand48 as generator in the expected C++11 form
- this removes an OS-specific dependency (eg, drand48_r is not POSIX)
  and allows easier use of other random number generators.

  The Rand48 generator has identical behaviour and period as the
  lrand48() library routine, but holds its own seed and state
  (which makes it re-entrant) and can be combined with other
  random distributions.

  However, when using the modified form to obtain scalar values
  they will not be identical to what drand48() yields.

  This is because drand48() uses the raw 48-bit values to directly
  set the mantissa of an IEEE double where as the newer distribution
  normalizes based on the 32-bit value.

STYLE: simplify code in Random::shuffle and use Swap
2018-04-09 11:08:34 +02:00
Mark Olesen
2f86cdc712 STYLE: more consistent use of dimensioned Zero
- when constructing dimensioned fields that are to be zero-initialized,
  it is preferrable to use a form such as

      dimensionedScalar(dims, Zero)
      dimensionedVector(dims, Zero)

  rather than

      dimensionedScalar("0", dims, 0)
      dimensionedVector("zero", dims, vector::zero)

  This reduces clutter and also avoids any suggestion that the name of
  the dimensioned quantity has any influence on the field's name.

  An even shorter version is possible. Eg,

      dimensionedScalar(dims)

  but reduces the clarity of meaning.

- NB: UniformDimensionedField is an exception to these style changes
  since it does use the name of the dimensioned type (instead of the
  regIOobject).
2018-03-16 10:24:03 +01:00
Mark Olesen
5d008f7a18 ENH: improvements for PtrList, UPtrList and new PtrDynList container
- improve internal handling to permit deriving resizable containers
  (eg, PtrDynList).

- include '->' iterator dereferencing

- Only append/set non-const autoPtr references. This doesn't break
  existing code, but makes the intention more transparent.
2018-03-22 01:13:38 +01:00
Mark Olesen
6a541ccc92 COMP: avoid attempted auto-vivify with PackedBoolList []
- also ensure fewer side-effects from inplaceReorder

- provide ListOps::reorder especially for PackedList and PackedBoolList
  since they behave differently from regular lists.
2018-03-15 15:20:00 +01:00
Mark Olesen
d17bc72585 ENH: consistency of HashSet setMany(), insertMany() with packed-list version
- this also provides a better separation of the intent
  (ie, inserting a single value, or inserting multiply values)
2018-03-14 21:08:29 +01:00
Mark Olesen
5d1fb23555 ENH: code reduction in PackedList, PackedBoolList (issue #751)
- eliminate iterators from PackedList since they were unused, had
  lower performance than direct access and added unneeded complexity.

- eliminate auto-vivify for the PackedList '[] operator.
  The set() method provides any required auto-vivification and
  removing this ability from the '[]' operator allows for a lower
  when accessing the values. Replaced the previous cascade of iterators
  with simpler reference class.

PackedBoolList:

- (temporarily) eliminate logic and addition operators since
  these contained partially unclear semantics.

- the new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

- more consistent use of PackedBoolList test(), set(), unset() methods
  for fewer operation and clearer code. Eg,

      if (list.test(index)) ...    |  if (list[index]) ...
      if (!list.test(index)) ...   |  if (list[index] == 0u) ...
      list.set(index);             |  list[index] = 1u;
      list.unset(index);           |  list[index] = 0u;

- deleted the operator=(const labelUList&) and replaced with a setMany()
  method for more clarity about the intended operation and to avoid any
  potential inadvertent behaviour.
2018-03-13 08:32:40 +01:00
Mark Olesen
23b6ea4b85 ENH: provide iterators for IndirectList, UIndirectList
- consistency with other containers.
  Allows range-for, enables various std algorithms, and can be used
  with ListOp::create() with an iterator range.
2018-03-07 17:50:34 +01:00
Mark Olesen
77338c8bd0 ENH: reduce overhead for clockTime, cpuTime
- clockValue class for managing the clock values only, with a null
  constructor that does not query the system clock (can defer to later).
  Can also be used directly for +/- operations.

- refactor clockTime, cpuTime, clock to reduce storage.
2018-03-15 10:01:51 +01:00
Mark Olesen
fb4c99b698 STYLE: minor cleanup of contiguous (issue #769) 2018-03-14 21:01:44 +01:00
Mark Olesen
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
Mark Olesen
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
Mark Olesen
57291e8692 STYLE: use autoPtr::New and tmp::New for simple return types 2018-02-26 14:00:30 +01:00
Mark Olesen
52b36f84b5 ENH: cleanup tmp class (issue #639)
Improve alignment of its behaviour with std::shared_ptr

  - element_type typedef
  - swap, reset methods

* additional reference access methods:

cref()
    returns a const reference, synonymous with operator().
    This provides a more verbose alternative to using the '()' operator
    when that is desired.

        Mnemonic: a const form of 'ref()'

constCast()
    returns a non-const reference, regardless if the underlying object
    itself is a managed pointer or a const object.
    This is similar to ref(), but more permissive.

        Mnemonic: const_cast<>

    Using the constCast() method greatly reduces the amount of typing
    and reading. And since the data type is already defined via the tmp
    template parameter, the type deduction is automatically known.

    Previously,

        const tmp<volScalarField>& tfld;

        const_cast<volScalarField&>(tfld()).rename("name");
        volScalarField& fld = const_cast<volScalarField&>(tfld());

    Now,

        tfld.constCast().rename("name");
        auto& fld = tfld.constCast();

--

BUG: attempts to move tmp value that may still be shared.

- old code simply checked isTmp() to decide if the contents could be
  transfered. However, this means that the content of a shared tmp
  would be removed, leaving other instances without content.

* movable() method checks that for a non-null temporary that is
  unique (not shared).
2018-02-26 12:05:00 +01:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
bcabe827f6 ENH: dedicated HashSetOps, HashTableOps namespaces
- relocated HashSetPlusEqOp and HashTablePlusEqOp to
  HashSetOps::plusEqOp and HashTableOps::plusEqOp, respectively

- additional functions for converting between a labelHashSet
  and a PackedBoolList or List<bool>:

  From lists selections to labelHashSet indices:

      HashSetOps::used(const PackedBoolList&);
      HashSetOps::used(const UList<bool>&);

  From labelHashSet to list forms:

      PackedBoolList bitset(const labelHashSet&);
      List<bool> bools(const labelHashSet&);
2018-03-06 11:41:34 +01:00
Mark Olesen
15f7260884 ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList.
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
  and ListOps::UniqueEqOp, respectively for better code isolation and
  documentation of purpose.

- relocated setValues to ListOps::setValue() with many more
  alternative selectors possible

- relocated createWithValues to ListOps::createWithValue
  for better code isolation. The default initialization value is itself
  now a default parameter, which allow for less typing.

  Negative indices in the locations to set are now silently ignored,
  which makes it possible to use an oldToNew mapping that includes
  negative indices.

- additional ListOps::createWithValue taking a single position to set,
  available both in copy assign and move assign versions.
  Since a negative index is ignored, it is possible to combine with
  the output of List::find() etc.

STYLE: changes for PackedList

- code simplication in the PackedList iterators, including dropping
  the unused operator() on iterators, which is not available in plain
  list versions either.

- improved sizing for PackedBoolList creation from a labelUList.

ENH: additional List constructors, for handling single element list.

- can assist in reducing constructor ambiguity, but can also helps
  memory optimization when creating a single element list.
  For example,

    labelListList labels(one(), identity(mesh.nFaces()));
2018-03-01 14:12:51 +01:00
Mark Olesen
b4703f4a08 ENH: pre-cleanup of Xfer class (issue #639)
- This class is largely a pre-C++11 holdover, prior to having movable
  references.

- align internals with autoPtr instead of always unconditionally
  allocating memory. The valid() method can be used to check for a null
  pointer.

- Consolidate into a single file, in anticipation of future removal.
2018-03-04 21:38:33 +01:00
Mark Olesen
081783db6c ENH: add Xfer rvalue(), valid() methods
- rvalue() is a (transitional) means of converting Xfer content to a
  reference for move construct, move assign semantics.

- valid() method for consistency with autoPtr and tmp classes
2018-02-28 09:30:31 +01:00
Mark Olesen
25339a5b49 ENH: minor cleanup of the Xfer class
- simplify structure, removed unused constuctors.

- transfer from base objects via '=' assignment removed as being too
  non-transparent

- add New factory method with perfect forwarding.
2018-01-26 15:53:57 +01:00
Mark Olesen
db1c1e89be ENH: avoid xfer on simple data types
- in many places can use move construcors or rely on RVO
2018-01-26 12:50:06 +01:00
Mark Olesen
fa3acc9955 ENH: make CompactListList swapable and move construct/assignable 2018-01-26 12:19:48 +01:00
Mark Olesen
d029f4c5c9 ENH: improved swap/transfer methods for FixedList
- the transfer method was previously a copy

- use std::reverse_iterator adaptors in FixedList
  This greatly reduces the amount of code and now avoids the array-bounds
  warning for FixedList::rend()

- use pointer arithmetic instead of dereferencing the internal array
2018-01-25 18:23:11 +01:00
Mark Olesen
8fc27e0ec8 ENH: make hashedWordList movable 2018-01-25 15:00:25 +01:00
Mark Olesen
915e8c9f35 ENH: remove Foam::Swap specializations for HashSet, HashTable
- without these will use the normal move construct + move assign.
  This is similarly efficient, but avoids the inadvertently having the
  incorrect Swap being used for derived classes.

STYLE: remove unused xfer methods for HashTable, HashSet

- unneeded since move construct and move assignment are possible
2018-01-25 12:13:16 +01:00
Mark Olesen
7ee93afe9e ENH: allow early completion in PackedBoolList::used()
- can stop producing content when the target number of entries has
  been reached.

- change return type to labelList instead an Xfer container.
  This allows return-value-optimization and avoids a surrounding
  allocation. This potentially breaks existing code.

- make PackedList and PackedBoolList moveable. Drop xfer wrappers.
2018-01-25 10:16:23 +01:00
Mark Olesen
2f32b586b5 ENH: PtrList, UPtrList cleanup
- rationalize iterators, reduce code duplication,
  improve assignment behaviour, moveable construct and assignment.
2018-01-09 13:15:50 +01:00
Mark Olesen
cc5f30f25e ENH: several improvements for linked-lists
- support move construct/assignment for linked-lists themselves
  and when moving into a 'normal' list

- better consistency with begin/end signatures and the various
  iterators.

- for indirect linked-lists, provide iterator access to the underlying
  data element address:   iter.get()  vs  &(iter())

- add standard '->' indirection for iterators (as per normal STL
  definitions)
2017-11-27 14:11:25 +01:00
Mark Olesen
ec38e7a408 ENH: prevent conversion of string to regExp in stringListOps (closes #739)
* For most cases, this conversion would be largely unintentional
  and also less efficient. If the regex is desirable, the caller
  should invoke it explicitly.
  For example,

      findStrings(regExp(str), listOfStrings);

  Or use one of the keyType, wordRe, wordRes variants instead.
  If string is to be used as a plain (non-regex) matcher,
  this can be directly invoked

      findMatchingStrings(str, listOfStrings);

  or using the ListOps instead:

      findIndices(listOfStrings, str);

* provide function interfaces for keyType.
2018-02-22 09:28:03 +01:00
Mark Olesen
f959927910 ENH: improve consistency of ListOps and stringListOps
- subsetList, inplaceSubsetList with optional inverted logic.

- use moveable elements where possible.

- allow optional starting offset for the identity global function.
  Eg,  'identity(10, start)' vs 'identity(10) + start'
2018-02-21 12:58:00 +01:00
Mark Olesen
c126464d1c ENH: change wordRes to be a List of wordRe instead of a wrapper (issue #259)
- this permits direct storage of a list with additional matcher
  capabilities

- provide wordRes::matcher class for similar behaviour as previously
2018-02-21 10:05:30 +01:00
Mark Olesen
03b287ed24 COMP: adjust tests to compile with current code base 2018-02-20 17:24:08 +01:00
Mark Olesen
09a6e94073 BUG: incorrect HashTable / HashSet instances
- Eg instead of using labelHashSet, used HashSet<label> which uses
  the string::hash for hashing. Other places inadvertently using the
  string::hash instead of Hash<label> for hashing.

STYLE: use Map<..> instead of HashTable<.., label, Hash<label>>

- reduces clutter
2018-02-09 09:30:02 +01:00
Mark Olesen
806b668418 STYLE: two-parameter Foam::name replaced by word::printf (issue #724)
- reduces some ambiguity and clarifies the expected output and
  behaviour.

STYLE: reduce some automatic conversions of char to string
2018-02-08 12:00:54 +01:00
Mark Olesen
e42c228155 ENH: cleanup List constructors (issue #725)
- add copy construct from UList

- remove copy construct from dissimilar types.

  This templated constructor was too generous in what it accepted.
  For the special cases where a copy constructor is required with
  a change in the data type, now use the createList factory method,
  which accepts a unary operator. Eg,

      auto scalars = scalarList::createList
      (
          labels,
          [](const label& val){ return 1.5*val; }
      );
2018-02-08 08:53:14 +01:00
Mark Olesen
9bd7ea593e ENH: added fileName::relative() method
- this currently just strips off the leading parent directory name

     "/this/path/and/subdirs/name"

     relative("/this/path")  -> "and/subdirs/name"
     relative("/this")       -> "path/and/subdirs/name"
2018-01-23 18:25:55 +01:00
Mark Olesen
39ee5d5079 ENH: add HashTable += operation (combines HashTables)
- adjust return values of HashSet operators.
2018-01-23 16:35:43 +01:00
Mark Olesen
23c9dd716d ENH: coding cleanup for memory streams
- simplify structure.
- protect against nullptr when resetting memory streams
- make UIListStream swappable
- add uiliststream as an example of using a plain std::istream
2018-01-22 09:42:06 +01:00
Mark Olesen
0a5e4cf1b0 ENH: define stdFoam::min(), stdFoam::max() as constexpr as per C++14 2018-01-19 17:13:03 +01:00
Mark Olesen
12aa2d3c30 ENH: SubStrings::str(int) method for similarity with std::smatch
- define regExp::results_type using SubStrings container for handling
  groups. This makes a later shift to std::smatch easier, but changes
  the regExp API for matching with groups. Previously had list element
  0 for regex group 1, now list element 0 is the entire match and list
  element 1 is regex group 1.

  Old:
      List<std::string> mat;
      if (re.match(text, mat))  Info<< "group 1: " << mat[0] << nl;

  New:
      regExp::results_type mat;
      if (re.match(text, mat))  Info<< "group 1: " << mat.str(1) << nl;
2018-01-17 00:15:36 +01:00
Mark Olesen
adbbd0e678 ENH: add argList option ignoring for compatibility upgrades
- can be used to handle when options become redundant, but it is
  undesirable to treat its presence as an error. Can now tag it as
  being ignored.

     argList::ignoreOptionCompat({"oldOption", 1706}, true);
     argList::ignoreOptionCompat({"oldBoolOpttion", 1706}, false);

     command  -oldOption xyz -oldBoolOpttion
2018-01-08 16:25:27 +01:00
Mark Olesen
345a2a42f1 ENH: simplify method names for reading argList options and arguments
- use succincter method names that more closely resemble dictionary
  and HashTable method names. This improves method name consistency
  between classes and also requires less typing effort:

    args.found(optName)        vs.  args.optionFound(optName)
    args.readIfPresent(..)     vs.  args.optionReadIfPresent(..)
    ...
    args.opt<scalar>(optName)  vs.  args.optionRead<scalar>(optName)
    args.read<scalar>(index)   vs.  args.argRead<scalar>(index)

- the older method names forms have been retained for code compatibility,
  but are now deprecated
2018-01-08 15:35:18 +01:00
Mark Olesen
2feb11dbeb ENH: add testing for directory lister class 2018-01-10 15:01:12 +01:00
Mark Olesen
199dc3376c STYLE: missing comma in Test-decomposePar 2018-01-08 11:57:54 +01:00
Mark Olesen
f55a42a835 ENH: improve robustness of scalarRanges from string (fixes #673)
- now avoid Istream and token mechanism in favour of a simpler string
  parser. This makes the code clearer, smaller, robuster.

- provide convenience ge/gt/le/lt static constructors for scalarRange
  for using bounds directly with specifying via a string parameter.

- scalarRange, scalarRanges now follow the unary predicate pattern
  (using an operator() for testing). This allows their reuse in
  other contexts. Eg, for filtering operations:

      myHash.filterValues(scalarRange::ge(100));

- remove unused scalarRanges methods that were specific to handling
  lists of time values. These were superseded by timeSelector methods
  several versions ago.
2018-01-08 09:59:04 +01:00
Mark Olesen
85eb441bea STYLE: add constexpr to PackedList methods 2018-01-04 19:16:15 +01:00
Mark Olesen
995c55b60e CONFIG: add clang third-party lib to LD_LIBRARY_PATH
- required if there is no system openmp and libomp or libgomp are
  only found in the clang hierarchy

STYLE: add some notes in the openmp rules.

- the _OPENMP macro is now used in low-level testing files
2017-12-19 16:07:15 +01:00
Mark Olesen
00325db33b ENH: additional options for transforming points (closes #660)
- The -rotate-angle option allows convenient specification of a
  rotation about an arbitrary axis. Eg, -rotate-angle '((1 1 1) 45)'

- The -origin option can be used to temporarily shift the origin
  for the rotation operations. For example,

      -origin '(0 0 1)' -rotate-angle '((1 0 0) 180)'

  for mirroring.
2017-12-19 11:24:08 +01:00
Mark Olesen
f38ad72ad0 ENH: add argList::optionCount method
- convenience for checking is any/all particular options have been
  specified. Eg,

  if (args.optionCount({"opt1", "opt2", "opt3"}) < 3) ...
2017-12-19 08:20:45 +01:00
mattijs
ddde330884 ENH: overset: new solvers, new stencil 2017-12-08 16:00:02 +00:00
Mark Olesen
7cb5b638ad STYLE: more consistency in handling of -region vs -allRegions 2018-07-19 09:15:33 +02:00
Mark Olesen
8042647610 STYLE: use newer argList access methods 2018-07-19 08:32:18 +02:00
Mark Olesen
71ab8a473d ENH: add normalise methods for vectors and normalised function
- the vector normalise() method modifies the object inplace,
  the normalised function returns a copy.

      vector vec1(1,2,3);
      vec1.normalise();
  vs
      vector vec1(1,2,3);
      vec1 /= mag(vec1) + VSMALL;

  For const usage, can use either of these

      const vector vec2a(normalised(vector(1,2,3)));
      const vector vec2b(vector(1,2,3).normalise());
2018-07-13 11:58:47 +02:00
Andrew Heather
7b8e2b1a18 Merge remote-tracking branch 'origin/master' into develop 2018-07-10 16:42:59 +01:00
Mark Olesen
2662042d49 ENH: improve controls for Time (issue #910)
- relocate some standard functionality to TimePaths to allow a lighter
  means of managing time directories without using the entire Time
  mechanism.

- optional enableLibs for Time construction (default is on)
  and a corresponding argList::noLibs() and "-no-libs" option

STYLE:

- mark Time::outputTime() as deprecated MAY-2016

- use pre-increment for runTime, although there is no difference in
  behaviour or performance.
2018-07-02 10:20:01 +02:00
Mark Olesen
8fc6bd17c9 ENH: improvements in profiling (issue #648)
- include amount of free system memory in profiling, which can give an
  indication of when swapping is about to start

- profilingSummary utility to collect profiling from parallel
  calculations. Collects profiling information from processor
  directories and summarize the time spent and number of calls as (max
  avg min) values.
2017-12-01 15:44:20 +01:00
Mark Olesen
d49929b210 ENH: improvements to stringOps format and split functions
- split now optionally retains empty substrings.
  Added split on fixed field width.

- Foam::name() now formats directly into string buffer, which a
  removes one layer of copying and also avoids using a non-constexpr
  in the temporary.

STYLE: explicit type narrowing on zero-padded output for ensight
2017-11-23 20:17:33 +01:00
Mark Olesen
aa112c3f26 ENH: support option aliases with versioning
- can be used for adjusting option names between versions
2017-11-22 14:42:31 +01:00
Mark Olesen
f2ba618c19 STYLE: consistency in using argList::addArgument, argList::addOption 2017-11-22 12:54:28 +01:00
Mark Olesen
a881204946 ENH: stringOps inplace methods now use a std::string parameter
- this makes them applicable to Foam::string, Foam::word etc

ENH: improvements to CStringList

- add strings() sublist variant which can be useful when handling
  command arguments separately

- add construct from SubStrings.
2017-11-22 08:03:52 +01:00
Mark Olesen
8730a7622a ENH: enumerations for known cell models in cellModel, ptr/ref lookups
- this provides a better typesafe means of locating predefined cell
  models than relying on strings. The lookup is now ptr() or ref()
  directly. The lookup functions behave like on-demand singletons when
  loading "etc/cellModels".

  Functionality is now located entirely in cellModel but a forwarding
  version of cellModeller is provided for API (but not ABI) compatibility
  with older existing user code.

STYLE: use constexpr for cellMatcher constants
2017-11-18 11:05:05 +01:00
Mark Olesen
c7392f7fb0 ENH: additional dictionary compatibility/migration methods
- when dictionary keywords change between versions, the programmer
  can use these compatibility methods to help with migration.

    * csearchCompat, foundCompat, lookupEntryPtrCompat, lookupEntryCompat,
      lookupCompat, lookupOrDefaultCompat, readIfPresentCompat, ...

  They behave like their similarly named base versions, but accept an
  additional list of older keyword names augmented by a version number.
  For example,

      dict.readIfPresentCompat
      (
          "key", {{"olderName", 1612}, {"veryOld", 240}},
          myscalar
      );

   where 1612=OpenFOAM-v1612, 240=OpenFOAM-v2.4.x, etc.
2017-11-08 19:08:10 +01:00
Mark Olesen
8d5f28bcc0 ENH: dictionary add/set methods now return a pointer to the entry
- If the entry could be directly inserted: a pointer to the inserted entry.
- If a dictionary merge was required: a pointer to the dictionary that
  received the entry.
- Return nullptr on any type of insertion failure.

This change is code compatible with existing code since it only alters
a bool return value to be a pointer return value.
2017-11-08 17:43:28 +01:00
Mark Olesen
2ae2783635 ENH: add a test dictionary token streaming class 2017-11-07 13:12:43 +01:00
Mark Olesen
61534989df ENH: simplify primitiveEntry parsing code, move append new tokens
- simplify string output code
2017-11-05 22:07:17 +01:00
Mark Olesen
c4de3e0a4d ENH: enhancements to behaviour of token
- improved memory alignment reduces overhead for Int32 compilation

- added move/swap semantics

- made the type() readonly in favour of setVariant() to allow change
  of variant within a particular storage representation.
  Eg, STRING -> VERBATIMSTRING.
2017-11-05 20:05:28 +01:00
Mark Olesen
e1b71c028c ENH: add move/swap semantics to string types and regExp
- move append() single element to List and DynamicList

ENH: add stringOps::count to avoid unnecessary string conversions
2017-11-05 13:26:10 +01:00
Mark Olesen
cae8a894cd ENH: allow creation of ITstream by parsing string 2017-11-06 09:25:58 +01:00
Mark Olesen
507486194e ENH: improved parallel transfer of strings
- support send/receive with embedded '\0' characters
2017-11-04 15:51:52 +01:00
Mark Olesen
b76d6b5cb5 STYLE: adjust tests for some updates in methods (issue #876) 2018-06-14 17:17:17 +02:00
mattijs
3b6027d1be ENH: test: make test apps compile. Fixes #876. 2018-06-14 15:14:14 +01:00
Mark Olesen
a784afc87d STYLE: floor/truncate instead of rounding for Random::position (issue #865)
- affects random integer ranges.
  Simpler to extend the range by one and floor (truncate) instead of
  rounding using odd intervals.
2018-06-13 12:38:13 +02:00
Mark Olesen
3bcbb1615b ENH: improve uniformity of Random::position<label>() (closes #865)
- start/end values were underrepresented due to rounding.
  Now extend the range to include -0.5 and +0.5 beyond the usual
  range to ensure the same number density.
2018-06-12 08:16:06 +02:00
mattijs
f51ee9a0e2 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-31 17:34:16 +01:00
mattijs
ec5d9cdf01 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-29 12:13:58 +01:00
Andrew Heather
ad25e18c7f Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-18 12:18:13 +01:00
Mark Olesen
053a648ee6 ENH: improvements to HashTable internals
- make single-parameter construct (label) explicit
- consolidate iterators
- slightly reduced overhead for some HashSet types
- improved resizing behaviour
- compact output for empty Ptr hashes
2017-10-31 08:46:47 +01:00
Mark Olesen
db552fb751 DEFEATURE: remove StaticHashTable
- unused, unmaintained and slower than the regular HashTable
2017-10-30 21:35:05 +01:00
Mark Olesen
930d6dcaf2 ENH: dummy I/O for nullObject, additional null subclass for zero/one
- the zero::null and one::null sub-classes add an additional null
  output adapter.

  The function of the nil class (special-purpose class only used for
  HashSet) is now taken by zero::null.
2017-10-31 10:54:17 +01:00
Mark Olesen
cd46cb7041 ENH: consistent reverse iterator definitions for UList and FixedList
- consistent with C++ STL conventions, the reverse iterators should
  use operator++ to transit the list from rbegin() to rend().

  The previous implementation used raw pointers, which meant that they
  had the opposite behaviour: operator-- to transit from rbegin() to
  rend().

  The updated version only has operator++ defined, thus the compiler
  should catch any possible instances where people were using the old
  (incorrect) versions.

- updated forAllReverseIters() and forAllConstReverseIters() macros to
  be consistent with new implementation and with C++ STL conventions.
2017-10-29 20:57:43 +01:00
Mark Olesen
d6b32094e1 ENH: add reverse iteration macros
- forAllReverseIters and forAllReverseConstIters macros
- stdFoam::rbegin(), stdFoam::rend()
  stdFoam::crbegin(), stdFoam::crend()
2017-10-29 16:02:19 +01:00
Mark Olesen
4e48beffd4 ENH: support "one-shot" changes to the dictionary inputMode (issue #429)
- Instead of relying on #inputMode to effect a global change it is now
  possible (and recommended) to a temporary change in the inputMode
  for the following entry.

     #default   : provide default value if entry is not already defined
     #overwrite : silently remove a previously existing entry
     #warn      : warn about duplicate entries
     #error     : error if any duplicate entries occur
     #merge     : merge sub-dictionaries when possible (the default mode)

  This is generally less cumbersome than the switching the global
  inputMode. For example to provide a set of fallback values.

      #includeIfPresent "user-files"
      ...
      #default value uniform 10;

  vs.

      #includeIfPresent "user-files"
      #inputMode protect
      ...
      value uniform 10;
      #inputMode merge    // _Assuming_ we actually had this before

  These directives can also be used to suppress the normal dictionary
  merge semantics:

     #overwrite dict { entry val; ... }
2017-07-29 17:44:22 +02:00
Mark Olesen
2fdc6b161a ENH: support full-scoping for keywords as lvalue (issue #429)
- patterns only supported for the final element.

  To create an element as a pattern instead of a word, an embedded
  string quote (single or double) is used for that element.
  Any of the following examples:

      "/top/sub/dict/'(p|U).*"     100;
      "/top/sub/dict/'(p|U).*'"    100;
      "/top/sub/dict/\"(p|U).*"    100;
      "/top/sub/dict/\"(p|U).*\""  100;

  are equivalent to the longer form:

      top
      {
          sub
          {
              dict
              {
                  "(p|U).*"     100;
              }
          }
      }

  It is not currently possible to auto-vivify intermediate
  dictionaries with patterns.

    NOK   "/nonexistent.*/value"   100;
    OK    "/existing.*/value"      100;

- full scoping also works for the #remove directive

        #remove "/dict1/subdict2/entry1"
2017-07-20 10:58:05 +02:00
Will Bainbridge
fe595af8c6 ENH: rigidBodyModelState: Added time value member
The absolute value of the the time has been added to the rigid body
model state. This value is not directly necessary for calculating the
evolution of the rigid body system, it just facilitates the
implementation of sub-models which are in some way time-dependent.
2017-12-13 11:59:46 +00:00
Mark Olesen
7d7b0bfe84 STYLE: use list methods find/found instead of findIndex function 2017-10-24 19:07:34 +02:00
Mark Olesen
0a62fd2f87 ENH: allow passing of comparator to sortToc methods
- this increases the flexibility of the interface

- Add stringOps 'natural' string sorting comparison.
  Digits are sorted in their natural order, which means that
      (file10.txt file05.txt file2.txt)
  are sorted as
      (file2.txt file05.txt file10.txt)

STYLE: consistent naming of template parameters for comparators

  - Compare for normal binary predicates
  - ListComparePredicate for list compare binary predicates
2017-10-27 14:28:00 +02:00
Mark Olesen
8ec64d8128 STYLE: compilation of some unit tests 2017-10-26 23:59:18 +02:00
Mark Olesen
16e75d8475 ENH: add fileName::validate static method (issue #628)
- similar to word::validate to allow stripping of invalid characters
  without triggering a FatalError.

- use this validated fileName in Foam::readDir to avoid problems when
  a directory contains files with invalid characters in their names

- adjust rmDir to handle filenames with invalid characters

- fileName::equals() static method to compare strings while ignoring
  any differences that are solely due to duplicate slashes
2017-10-26 21:23:24 +02:00
Mark Olesen
2bd2f83f6e ENH: cleanup and rationalize memory-backed streams
- more consistent naming:
  * Versions that hold and manage their own memory:
      IListStream, OListStream

  * Versions that reference a fixed size external memory:
      UIListStream, UOListStream

- use List storage instead of DynamicList within OListStream.
  Avoids duplicate bookkeeping, more direct handling of resizing.
2017-10-26 12:09:47 +02:00
Mark Olesen
c1c4e91ffb ENH: handle underflow (rounding) of float/double as zero (issue #625)
- The problem occurs when using atof to parse values such as "1e-39"
  since this is out of range for a float and _can_ set errno to
  ERANGE.

  Similar to parsing of integers, now parse with the longest floating
  point representation "long double" via strtold (guaranteed to be
  part of C++11) and verify against the respective VGREAT values for
  overflow. Treat anything smaller than VSMALL to be zero.
2017-10-25 20:55:37 +02:00
Mark Olesen
88bb403fe0 ENH: new stream output: OListStream
- an output stream to a DynamicList
2017-10-24 11:59:11 +02:00