Commit Graph

31 Commits

Author SHA1 Message Date
Mark Olesen
5ba4e83f7a CONFIG: update versions of some ThirdParty software
- ADIOS 1.13.0
- fftw 3.3.7
- paraview 5.4.1

ENH: include ThirdParty QT libraries in LD_LIBRARY_PATH for paraview
2017-12-15 09:23:37 +01:00
Mark Olesen
dd2b3d4e9b STYLE: drop little-used, little-known 'foamSite' alias 2017-12-14 10:58:15 +01:00
Mark Olesen
05a8fe5dd3 STYLE: compact license text in config files for easier reading/editing 2017-11-20 09:00:10 +01:00
Mark Olesen
e9254eee58 ENH: support KaHIP decomposition
- refactor some common metis-like elements into the metisLikeDecomp
  abstract class.
2017-10-09 21:00:34 +02:00
Mark Olesen
ce0868106a ENH: use bash associative array for on-the-fly completion (issue #551)
- this reduces the number of functions and allows lazy loading of
  completion options, which makes it easy to quickly add any other
  OpenFOAM application in completion.

  The generic '_of_complete_' function handles (bash) completion for
  any OpenFOAM application. On the first call for any particular
  application, it retrieves the available options from the application
  help output and adds this information to its environmental cache for
  subsequent use.

- Tcsh completion uses the same function via a bash wrapper.
  But since its wrapper is transient, the on-the-fly generation would
  be less efficient. For this case, a pre-generated completion_cache
  can be used, which is generated with

      bin/tools/foamCreateCompletionCache
2017-08-08 13:17:36 +02:00
Mark Olesen
c614110d46 ENH: improve bash completion functionality (issue #551)
- use complete -o filenames, dropped -o nospace to make it more responsive.

- restructure completion code to use a unified backend, which makes it easier
  understand, maintain and re-use.

- foamCreateBashCompletions now simply outputs to a stdout, and allows
  quick generation of completion of single applications.

- add -fileHandler completion in anticipation of future changes there.

- relocated as etc/config.s/bash_completion to prevent inadvertently
  having two versions (.com, .org) installed at the same time.
2017-07-31 15:35:40 +02:00
Mark Olesen
4971cedc2a CONFIG: cleanup bash completions in unset 2017-06-26 11:09:05 +02:00
Mark Olesen
7f01a4beda CONFIG: address differences between shells
- suppress error messages that appear with zsh.
  According to unset(1p), 'unset -f' unsets a function.
  If the function was not previously defined, this is a no-op.
  This is similar for zsh, but there it emits a warning if the
  function was not previously defined.

- avoid 'local' in functions sources from etc/bashrc.
  ksh does not support this.

- use 'command' shell builtin instead of 'type'.
  Seems to be more consistent between shell flavours.
2017-04-20 11:02:54 +02:00
Mark Olesen
e6e617ed47 STYLE: suppress unalias warnings/errors
- cleanup variables last in etc/bashrc for a clean exit code
2017-03-23 10:16:05 +01:00
Mark Olesen
d3911dd167 STYLE: avoid old-style shell backticks in various places 2017-02-20 09:30:58 +01:00
Mark Olesen
5f811ac09d STYLE: confusing wm32, wm64 aliases (issue #364)
- wm32/wm64 were for changing between -m32, -m64 builds on x86_64
  architectures. This is seldom enough not to warrant a special alias.
  Also ambiguous if these could refer to label sizes.

- Remove wm32,wm64 aliases.
- Add wmInt32, wmInt64 aliases for switching WM_LABEL_SIZE.
2016-12-22 11:49:46 +01:00
Mark Olesen
3f362fd7ec CONFIG: add config files for VTK, MESA
- sometimes used for off-screen rendering.
  Only add to library-path when they are actually available
2016-12-16 08:17:29 +01:00
Mark Olesen
00c3c6f9a7 ENH: improve configuration of gperftools (now at version 2.5)
- support gperftools-none, gperftools-system configurations
  as per other third-party packages.

STYLE: clean up more environment variables

CONFIG: testing adios rule
2016-11-27 16:24:40 +01:00
Andrew Heather
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
Henry Weller
2997bfbdfd etc/config.*/unset: unset FOAM_ETC
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2285
2016-10-09 15:15:29 +01:00
Mark Olesen
84683b5f90 CONFIG: remove foundation use of FOAMY_HEX_MESH control.
- instead we use the CGAL settings directly since they have the
  same option of (version | system | none)

- may wish to review this again in the future.
2016-09-29 12:36:27 +02:00
Henry Weller
c482490a60 etc/bashrc, etc/config.sh:
- "$FOAM_USER_APPBIN" and "$FOAM_USER_LIBBIN" have been added to
    "foamOldDirs" in "etc/bashrc" and "etc/config.sh/unset"

  - "$OPAL_PREFIX" is now undefined in the option "SYSTEMOPENMPI" within
    "etc/config.sh/mpi", but only if the path defined in this variable
    is cleaned when using "foamCleanPath".

  - "$OPAL_PREFIX" is now also conditionally undefined in
    "etc/config.sh/unset" when the path is picked up by "foamCleanPath".

Patch contributed by Bruno Santos
Resolved bug-report http://bugs.openfoam.org/view.php?id=2210
2016-08-23 21:02:55 +01:00
Mark Olesen
fae40c5def STYLE: use POSIX 'unset -f' for functions (affects dash) 2016-09-29 14:10:49 +02:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
Mark Olesen
b2234f19e5 BUG: could not set system clang (issue #166)
- gcc/g++ always being used

STYLE: spurious unsetenv WM_COMPILER_TYPE (csh only)

- more stringent cleanup of ThirdParty settings for wmUNSET
2016-06-29 16:06:48 +02:00
Henry Weller
bd64b4059f CGAL: Set to use the system CGAL installation by default 2016-06-23 16:05:44 +01:00
Henry Weller
ab0b5545b4 etc/config.[c]sh: update wmRefresh to call wmUnset before updating the environment 2016-06-21 19:48:19 +01:00
Mark Olesen
b2b4123164 STYLE: minor config file details
- move unset mpi buffer size from config.csh/settings -> config.csh/mpi

- wmUNSET now also unalias wmREFRESH

Note: unsetenv WM_COMPILER_TYPE in csh variant?

- drop reference to paraview-3 in config files.
  Cannot say anything definite about support for versions
  this old (2012)
2016-06-17 19:56:19 +02:00
Henry Weller
680b4e1f11 etc/config.[c]sh/unset: unalias wmRefresh
Resolves bug-report http://bugs.openfoam.org/view.php?id=2112
2016-06-10 22:19:21 +01:00
Henry Weller
6fe3812698 etc/config.*/aliases: Updated, removed duplicates and added foamVersion
foamVersion: prints the current OpenFOAM version
foamVersion <version>: changes to the specified version
2016-06-07 16:15:46 +01:00
Henry Weller
b625d2ba8e etc/config.*/unset: Added CGAL-related environment variables 2016-06-05 18:22:28 +01:00
Henry Weller
e4dc50dcb0 postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
Henry Weller
f779557d38 etc/config.*/unset: Updated for changes in foamOldDirs
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2031
2016-05-05 23:37:33 +01:00
Henry Weller
ce81c49d2e etc/bashrc, etc/cshrc: Filter $WM_PROJECT_DIR from paths rather than $FOAM_INST_DIR
Additionally filter $ParaView_DIR from paths in config.sh/paraview and config.csh/paraview

Resolves bug-report http://bugs.openfoam.org/view.php?id=2031
2016-05-05 15:37:00 +01:00
Henry Weller
350d03246e scripts: Reformat with consistent section separators 2016-02-15 18:30:24 +00:00
Henry Weller
1193903d8d OpenFOAM-dev/etc: separated scripts for bash and csh into separate directories
etc/config.sh and etc/config.csh

This structure is more convenient to add support for other shells, e.g. zsh, fish etc.

Resolves feature request to simplify support for other shells in
http://www.openfoam.org/mantisbt/view.php?id=1232
2016-02-10 10:22:25 +00:00