Commit Graph

743 Commits

Author SHA1 Message Date
Henry Weller
6a53ed41ba Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
Henry Weller
b3f3562d3c Doxygen documentation: Use the standard 'Usage' rather than the '\heading....' 2016-06-17 17:22:24 +01:00
Henry Weller
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
Henry Weller
029825b83c applications/utilities: Reorganized 2016-06-13 17:02:43 +01:00
Henry Weller
fda11f60b1 foamListTimes: moved to applications/utilities/miscellaneous/foamListTimes 2016-06-13 16:42:25 +01:00
Henry Weller
dfd9d97646 Utility ptot has been superceded by the postProcess utility:
postProcess -func 'totalPressureIncompressible(U,p)'
or
    postProcess -func 'totalPressureCompressible(rho,U,p)'
2016-06-13 16:42:00 +01:00
Henry Weller
de02a089ba tutorials: Removed references to 'sampleDict' 2016-06-13 14:53:56 +01:00
Henry Weller
d9f423ec85 Utility sample: replaced by 'postProcess -func sample'
To re-use existing 'sampleDict' files simply add the following entries:

    type sets;
    libs ("libsampling.so");

and run

    postProcess -func sampleDict

It is probably better to also rename 'sampleDict' -> 'sample' and then run

    postProcess -func sampleDict
2016-06-13 14:27:46 +01:00
Henry Weller
ffc5578812 probeLocations has been superceded by the postProcess utility
e.g.
postProcess -func probes

or

postProcess -func 'probes(p, U)'
2016-06-13 09:55:26 +01:00
Henry Weller
ee42f980f6 Merge branch 'master' of github.com:OpenFOAM/OpenFOAM-dev 2016-06-13 09:47:53 +01:00
Henry Weller
ae1a6dd12d functionObjects: Simplified the handling of the post-processing mode
Replaced the 'postProcess' argument to the 'write' and 'execute'
functions with the single static member 'postProcess' in the
functionObject base-class.
2016-06-13 08:36:03 +01:00
Henry Weller
18b632e71d Utilities patchAverage and patchIntegrate replaced by postProcess
e.g.
    postProcess -func 'patchAverage(name=inlet,p)'
    postProcess -func 'patchIntegrate(name=inlet,p)'
2016-06-12 22:32:15 +01:00
Henry Weller
792eaa3566 stressComponents: utility replaced by the 'R' and 'components' functionObject used with the '-postProcess' option 2016-06-09 18:09:27 +01:00
Henry Weller
acdb7a0324 wallGradU: utility replaced by the 'grad' functionObject used with the '-postProcess' option 2016-06-09 18:06:39 +01:00
Henry Weller
657c2909ed createTurbulenceFields: utility replaced by 'turbulenceFields' functionObject used with the '-postProcess' option 2016-06-09 17:17:19 +01:00
Henry Weller
6a03830b05 R: utility replaced by functionObject used with the '-postProcess' option 2016-06-09 16:28:30 +01:00
Henry Weller
4734b1af5b wallShearStress: utility replaced by functionObject used with the '-postProcess' option 2016-06-09 16:05:13 +01:00
Henry Weller
e175594e9f Merge branch 'master' of github.com:OpenFOAM/OpenFOAM-dev 2016-06-09 14:52:04 +01:00
Henry Weller
6000ea217f postProcess: Added '-list' option to list the available configured functionObjects 2016-06-01 16:28:07 +01:00
Henry Weller
e4dc50dcb0 postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
Henry Weller
f5ce43069d functionObjects, foamCalcFunctions, fvOptions: Standardized keywords for selecting fields and objects
Generally fields and objects are selected using the 'field[s]' and
'object[s]' keywords but this was not consistent between all
functionObject, fvOptions etc. and now fixed by applying the following
renaming:

fieldName -> field
fieldNames -> fields
objectName -> object
objectNames -> objects
2016-05-21 20:15:21 +01:00
Henry Weller
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
5af1a7e4f3 functionObjects::partialWrite: Redundant and removed
the equivalent functionality is provided by the writeRegisteredObject
   functionObject in a MUCH simpler, easier and extensible manner.

functionObject: Removed the now redundant 'timeSet' function.
2016-05-18 12:23:29 +01:00
Henry Weller
83bae2efd3 functionObjects: Renamed dictionary entry 'functionObjectLibs' -> 'libs'
This changes simplifies the specification of functionObjects in
controlDict and is consistent with the 'libs' option in controlDict to
load special solver libraries.

Support for the old 'functionObjectLibs' name is supported for backward compatibility.
2016-05-16 22:09:01 +01:00
Henry Weller
a44857b4f2 functionObjects: Simply functionObjects requiring access to the fvMesh using fvMeshFunctionObject 2016-05-16 16:21:06 +01:00
Henry Weller
78d2971b21 functionObjects: rewritten to all be derived from 'functionObject'
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
  - Time-control for execution and writing is now provided by the
    'timeControlFunctionObject' which instantiates the processing
    'functionObject' and controls its operation.
  - Alternative time-control functionObjects can now be written and
    selected at run-time without the need to compile wrapped version of
    EVERY existing functionObject which would have been required in the
    old structure.
  - The separation of 'execute' and 'write' functions is now formalized in the
    'functionObject' base-class and all derived classes implement the
    two functions.
  - Unnecessary implementations of functions with appropriate defaults
    in the 'functionObject' base-class have been removed reducing
    clutter and simplifying implementation of new functionObjects.
  - The 'coded' 'functionObject' has also been updated, simplified and tested.
  - Further simplification is now possible by creating some general
    intermediate classes derived from 'functionObject'.
2016-05-15 16:40:01 +01:00
Henry Weller
ce0cd35185 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
Henry Weller
6164c2f262 Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
Henry Weller
c983670c91 functionObjects: Changed options 'outputControl' -> 'writeControl' and 'outputInterval' -> 'writeInterval'
for consistency with the time controls in controlDict and to avoid
unnecessary confusion.  All code and tutorials have been updated.

The old names 'outputControl' and 'outputInterval' are but supported for
backward compatibility but deprecated.
2016-05-12 11:38:11 +01:00
Henry Weller
437030a57d functionObjects: Removed the redundant "viable" member function
Construction failure and recovery is not handled with exceptions in functionObjectList
2016-05-11 12:57:17 +01:00
Henry Weller
080908732d src/postProcessing/functionObjects: Removed unused IOOutputFilter clutter 2016-05-10 12:54:42 +01:00
Henry Weller
1ab0875293 writeVTK: New functionObject to write fields is VTK format
Description
    This functionObject writes objects registered to the database in VTK format
    using the foamToVTK library.

    Currently only the writing of the cell-values of volFields is supported but
    support for other field types, patch fields, Lagrangian data etc. will be
    added.

    Example of function object specification:
    \verbatim
        writeVTK1
        {
            type        writeVTK;
            functionObjectLibs ("libIOFunctionObjects.so");
            ...
            objectNames (obj1 obj2);
        }
    \endverbatim

    \heading Function object usage
    \table
        Property     | Description             | Required    | Default value
        type         | type name: writeVTK     | yes         |
        objectNames  | objects to write        | yes         |
    \endtable
2016-05-10 10:06:19 +01:00
Henry Weller
5469e21fe2 execFlowFunctionObjects: Replaced with script providing instructions to use the '-postProcess' option 2016-05-09 17:02:00 +01:00
Henry Weller
9461c7828f foamToVTK: Added Allwmake 2016-05-06 17:42:22 +01:00
Henry Weller
14abfa742b primitives/direction: Changed from "char" to "int8_t" and added IO operators
to avoid problems when writing "nComponents"
2016-05-06 17:40:49 +01:00
Henry Weller
a50015a423 foamToVTK: Use UPtrList rather than PtrList 2016-05-06 14:11:38 +01:00
Henry Weller
566f2734b9 foamToVTK: Separated into the library libfoamToVTK and the utility foamToVTK 2016-05-04 15:16:33 +01:00
Henry Weller
f6c670dcac functionObjects: Updated docs 2016-05-04 08:51:39 +01:00
Henry Weller
32762aa1f9 Change field loop index from "fieldI" to "fieldi" 2016-05-02 18:20:48 +01:00
Henry Weller
0534a225fd functionObjects: Moved into the functionObjects namespace and rationalized and simplified failable construction
Rather than requiring each functionObject to handle failed construction
internally (using the active_ flag) the static member function "viable"
is provided which returns true if construction of the functionObject is
likely to be successful.  Failed construction is then handled by the
wrapper-class which constructs the functionObject,
e.g. "OutputFilterFunctionObject".
2016-05-02 16:28:24 +01:00
Henry Weller
81f31acbb3 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
3c053c2fe6 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField()
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
2016-04-30 21:40:09 +01:00
Henry Weller
ccd958a8f1 GeometricField::dimensionedInteralFieldRef() -> GeometricField::ref()
In order to simplify expressions involving dimensioned internal field it
is preferable to use a simpler access convention.  Given that
GeometricField is derived from DimensionedField it is simply a matter of
de-referencing this underlying type unlike the boundary field which is
peripheral information.  For consistency with the new convention in
"tmp"  "dimensionedInteralFieldRef()" has been renamed "ref()".
2016-04-30 18:43:51 +01:00
Henry Weller
5df2b96489 GeometricField::internalField() -> GeometricField::internalFieldRef()
Non-const access to the internal field now obtained from a specifically
named access function consistent with the new names for non-canst access
to the boundary field boundaryFieldRef() and dimensioned internal field
dimensionedInternalFieldRef().

See also commit 22f4ad32b1
2016-04-30 14:25:21 +01:00
Henry Weller
67e2d02800 functionObjectFile: Separated into functionObjectFile and functionObjectFiles
functionObjectFile provides basic directory, file and formatting functions
functionObjectFiles provides multi-file cache
2016-04-30 09:18:42 +01:00
Henry Weller
15b36331fe Remove .internalField() clutter for const-access to the internal field 2016-04-28 12:37:31 +01:00
Henry Weller
ea5401c770 GeometricField::GeometricBoundaryField -> GeometricField::Boundary
When the GeometricBoundaryField template class was originally written it
was a separate class in the Foam namespace rather than a sub-class of
GeometricField as it is now.  Without loss of clarity and simplifying
code which access the boundary field of GeometricFields it is better
that GeometricBoundaryField be renamed Boundary for consistency with the
new naming convention for the type of the dimensioned internal field:
Internal, see commit 4a57b9be2e

This is a very simple text substitution change which can be applied to
any code which compiles with the OpenFOAM-dev libraries.
2016-04-28 07:22:02 +01:00
Henry Weller
4a57b9be2e GeometricField: Rationalized and simplified access to the dimensioned internal field
Given that the type of the dimensioned internal field is encapsulated in
the GeometricField class the name need not include "Field"; the type
name is "Internal" so

volScalarField::DimensionedInternalField -> volScalarField::Internal

In addition to the ".dimensionedInternalField()" access function the
simpler "()" de-reference operator is also provided to greatly simplify
FV equation source term expressions which need not evaluate boundary
conditions.  To demonstrate this kEpsilon.C has been updated to use
dimensioned internal field expressions in the k and epsilon equation
source terms.
2016-04-27 21:32:45 +01:00
Henry Weller
f539fd4c4b Replaced StaticAssert with the C++11 equivalent static_assert 2016-04-26 20:44:55 +01:00
Henry Weller
070515e9db Revert "src/postProcessing/functionObjects/field/Make/files: Corrected"
This reverts commit 3cfc54ba09.
2016-04-26 20:33:45 +01:00