Commit Graph

7206 Commits

Author SHA1 Message Date
Mark Olesen
a6d1f47943 ENH: use globalIndex gather for simpler code and less communication
- checkTools, PatchTools::gatherAndMerge, SprayCloud penetration
2022-03-04 17:49:23 +00:00
Mark Olesen
1348cd7e7b ENH: use broadcasting Pstreams for one-to-all sends 2022-03-04 17:49:23 +00:00
Mark Olesen
8478595a15 ENH: new broadcast version of Pstreams (#2371)
- The idea of broadcast streams is to replace multiple master to
  subProcs communications with a single MPI_Bcast.

    if (Pstream::master())
    {
        OPBstream toAll(Pstream::masterNo());
        toAll << data;
    }
    else
    {
        IPBstream fromMaster(Pstream::masterNo());
        fromMaster >> data;
    }

    // vs.
    if (Pstream::master())
    {
        for (const int proci : Pstream::subProcs())
        {
            OPstream os(Pstream::commsTypes::scheduled, proci);
            os << data;
        }
    }
    else
    {
        IPstream is(Pstream::commsTypes::scheduled, Pstream::masterNo());
        is >> data;
    }

  Can simply use UPstream::broadcast() directly for contiguous data
  with known lengths.

Based on ideas from T.Aoyagi(RIST), A.Azami(RIST)
2022-03-04 17:49:23 +00:00
Mark Olesen
b0ef650a12 ENH: Pstream specialization for float/scalar, FixedList (#2351)
- native MPI min/max/sum reductions for float/double
  irrespective of WM_PRECISION_OPTION

- native MPI min/max/sum reductions for (u)int32_t/(u)int64_t types,
  irrespective of WM_LABEL_SIZE

- replace rarely used vector2D sum reduction with FixedList as a
  indicator of its intent and also generalizes to different lengths.

  OLD:
      vector2D values;  values.x() = ...;  values.y() = ...;
      reduce(values, sumOp<vector2D>());

  NEW:
      FixedList<scalar,2> values;  values[0] = ...;  values[1] = ...;
      reduce(values, sumOp<scalar>());

- allow returnReduce() to use native reductions. Previous code (with
  linear/tree selector) would have bypassed them inadvertently.

ENH: added support for MPI broadcast (for a memory span)

ENH: select communication schedule as a static method

- UPstream::whichCommunication(comm) to select linear/tree
  communication instead of ternary or
  if (Pstream::nProcs() < Pstream::nProcsSimpleSum) ...

STYLE: align nProcsSimpleSum static value with etc/controlDict override
2022-03-04 17:49:23 +00:00
Mark Olesen
666e5f6dc4 GIT: remove stray file, fix server documentation path 2022-03-02 15:12:59 +01:00
mattijs
a74b9ca763 ENH: createPatch: handle multiple regions. Fixes #2386
Also #1361.
2022-03-02 13:14:30 +00:00
Mark Olesen
055a7b29e0 ENH: ensure indices are properly reset in SortList
- use more ListOps functions, add uniqueSort() method
2022-02-21 19:53:21 +01:00
Mark Olesen
42f426f6c4 ENH: relocate graph writers to meshTools (not reqd by core OpenFOAM lib)
GIT: relocate globalIndex (is independent of mesh)

STYLE: include label/scalar Fwd in contiguous.H

STYLE: unneed commSchedule include in GeometricField
2022-02-21 19:53:21 +01:00
mattijs
58f76ccc5f ENH: checkMesh: correct AMI weight directory. See #2356. 2022-02-21 16:14:08 +00:00
mattijs
d5644058b2 ENH: checkMesh: output AMI weights on mapped. Fixes #2356.
Also output target weights
2022-02-17 09:31:20 +00:00
Mark Olesen
295822daa6 ENH: cleanup/reorganize surfaceWriter and fileFormats
- remove unused surfaceWriter constructors, noexcept on methods

- relocate/rename writerCaching from surfMesh -> fileFormats

- changed from surfaceWriters::writerCaching to
  ensightOutput::writerCaching to permit reuse elsewhere

- relocate static output helpers to ensightCase

- refactor NAS coordinate writing
2022-02-10 19:28:51 +01:00
Mark Olesen
731e276e21 ENH: extend command-line options for particleTracks
- can specify format, stride without modifying a dictionary
  (increases flexibility, eases testing)
2022-02-10 19:28:51 +01:00
Mark Olesen
7db2a29413 ENH: type aliases for common GeometricField forms (#2348)
ENH: provide fieldTypes::surface names (as per fieldTypes::volume)

ENH: reduce number of files for surface fields

- combine face and point field declarations/definitions,
  simplify typeName definitions
2022-02-10 19:28:50 +01:00
Mark Olesen
ddcc04dadc BUG: vtk write of uniform field in parallel (fixes #2349)
- used low-level MPI gather, but the wrapping routine contains an
  additional safety check for is_contiguous which is not defined for
  various std::pair<..> combination.

  So std::pair<label,vector> (which is actually contiguous, but not
  declared as is_contiguous) would falsely trip the check.

  Avoid by simply gathering unbundled values instead.
2022-02-10 16:46:13 +01:00
Mark Olesen
2919c9b675 STYLE: minor changes
- do not need STRINGIFY macros in ragel code
- remove wordPairHashTable.H and use equivalent wordPairHashes.H instead

STYLE: replace addDictOption with explicit option

 - the usage text is otherwise misleading

GIT: combine Pair/Tuple2 directories
2022-02-10 16:46:13 +01:00
Mark Olesen
62ec2f2ddf COMP: deprecate domainName and full hostName (#2280)
- unused in regular OpenFOAM code
- POSIX version uses deprecated gethostbyname()
- Windows version never worked

COMP: localize, noexcept on internal OSspecific methods

STYLE: support fileName::Type SYMLINK and LINK as synonyms
2022-02-10 16:46:12 +01:00
mattijs
debbcfb7df BUG: redistributePar: handle cyclicA(C)MI cleaner. See #1558.
Should test on patch, not patch field
2022-02-10 13:46:21 +00:00
mattijs
ad6d3a088e ENH: createPatch: update fields. Fixes #1361.
- adds 'patchFields' subdictionary to specify fvPatchFields
  similar to createBaffles
- implements automatic matching across multiple regions
2022-02-09 15:54:24 +00:00
mattijs
7fa44e3c19 BUG: redistributePar: handle cyclicA(C)MI cleaner. See #1558. 2022-02-09 14:17:17 +00:00
mattijs
f14263e019 ENH: checkMesh: output AMI weights on mapped. Fixes #2356. 2022-02-07 16:21:08 +00:00
Mark Olesen
e1f06bf38e ENH: globalIndex gather ops with reduced communication (#2332)
- for contiguous data, added mpiGatherOp() to complement the
  gatherOp() static method

- the gather ops (static methods) populate the globalIndex on the
  master only (not needed on other procs) for reduced communication

- rename inplace gather methods to include 'inplace' in their name.
  Regular gather methods return the gathered data directly, which
  allows the following:

      const scalarField mergedWeights(globalFaces().gather(wghtSum));

  vs.
      scalarField mergedWeights;
      globalFaces().gather(wghtSum, mergedWeights());

  or even:

      scalarField mergedWeights;
      List<scalarField> allWeights(Pstream::nProcs());
      allWeights[Pstream::myProcNo()] = wghtSum;
      Pstream::gatherList(allWeights);
      if (Pstream::master())
      {
          mergedWeights =
              ListListOps::combine<scalarField>
              (
                  allWeights, accessOp<scalarField>()
              );
       }

- add parRun guards on various globalIndex gather methods
  (simple copies or no-ops in serial) to simplify the effort for callers.
2022-01-31 20:09:49 +01:00
Mark Olesen
61aef196ed STYLE: use single-parameter SubList where applicable (reduces clutter) 2022-01-31 20:08:52 +01:00
Mark Olesen
ab065cd5d3 BUG: avoid memory slicing in LList (#2300)
ENH: reduce code effort for clearing linked-lists

ENH: adjust linked-list method name

- complement linked-list append() method with prepend() method
  instead of 'insert', which is not very descriptive
2022-01-31 20:08:52 +01:00
Mark Olesen
d2961eec09 STYLE: avoid deprecation warnings for autoPtr set() method
- set() was silently deprecated in favour of reset() FEB-2018
  since the original additional check for overwriting an existing
  pointer was never used. The reset(...) name is more consistent
  with unique_ptr, tmp etc.

  Now emit deprecations for set().

- use direct test for autoPtr, tmp instead of valid() method.
  More consistent with unique_ptr etc.

STYLE: eliminate redundant ptr() use on cloned quantities
2022-01-24 12:26:38 +01:00
Mark Olesen
97f452d53a COMP: isolate include for coordSet writer 2022-01-21 09:19:50 +01:00
mattijs
fa5d79d0e5 ENH: redistributePar: add comment 2022-01-12 09:16:04 +00:00
Andrew Heather
a2014242cf RELEASE: Updated headers for v2112 2021-12-20 14:18:01 +00:00
sergio
af864cdcd1 ENH: Adding option mesh flux correction to solidFoam 2021-12-16 11:59:36 -08:00
sergio
cd2e69923e STY: Function names and arguments order 2021-12-15 10:16:20 +00:00
sergio
13b1417710 ENH: Adding new access to basic thermo for rho and Cp 2021-12-15 10:16:20 +00:00
Kutalmis Bercin
18bc876c93 ENH: rhoCentralFoam: add dynamic-mesh motion capabilities
ENH: discard rhoCentralDyMFoam by merging it with rhoCentralFoam
2021-12-15 10:15:37 +00:00
Kutalmis Bercin
445baaf277 ENH: buoyantPimpleFoam: add dynamic-mesh motion capabilities 2021-12-15 10:15:37 +00:00
Kutalmis Bercin
19705bdd64 ENH: buoyantBoussinesqPimpleFoam: add dynamic-mesh motion capabilities 2021-12-15 10:15:37 +00:00
Johan Roenby
0bf7758dd4 ENH: interIsoFoam/isoAdvection: new porosity extension
Co-authored-by: Niels Gjøl Jacobsen <>
Co-authored-by: Konstantinos Missios <>
Co-authored-by: Henning Scheufler <henning.scheufler@dlr.de>
Co-authored-by: Johan Roenby <johan.roenby@gmail.com>
2021-12-13 17:09:10 +00:00
Andrew Heather
c46216e645 COMP: Added missed file 2021-12-10 15:43:22 +00:00
mattijs
7da2a5e096 ENH: redistributePar: reconstruct mode in collated. Fixes #2194 2021-12-10 15:24:04 +00:00
Mark Olesen
a6cbfcb9ba STYLE: qualify expression debug flags
- for debug/tracing handle the following keywords:

   * debug.driver   (was "debugBaseDriver")
   * debug.scanner  (was "debugScanner")
   * debug.parser   (was "debugParser")
2021-12-10 14:46:21 +00:00
Mark Olesen
510ffb3322 ENH: code reduction, improvements for expressions
- literal lookups only for expression strings

- code reduction for setExprFields.

- changed keyword "condition" to "fieldMask" (option -field-mask).
  This is a better description of its purpose and avoids possible
  naming ambiguities with functionObject triggers (for example)
  if we apply similar syntax elsewhere.

BUG: erroneous check in volumeExpr::parseDriver::isResultType()

- not triggered since this method is not used anywhere
  (may remove in future version)
2021-12-10 14:46:21 +00:00
Andrew Heather
6be31e3feb ENH: pimpleFoam - added LTS support 2021-12-10 14:34:05 +00:00
Kutalmis Bercin
cad325f41f BUG: icoReactingMultiphaseInterFoam: enable phasesSystem surface tension models (Fixes #2228) 2021-12-09 18:49:02 +00:00
Dario Canossi
de90b2b28e BUG: rotateMesh: prevent double rotations (Fixes #2186) 2021-12-09 18:49:02 +00:00
Andrew Heather
0f155daf86 ENH: particleTracks - updated to include field data
The utility will now add field data to all tracks (previous version only
created the geometry)

The new 'fields' entry can be used to output specific fields.

Example

    cloud           reactingCloud1;

    sampleFrequency 1;

    maxPositions    1000000;

    fields          (d U); // includes wildcard support

STYLE: minor typo fix
2021-12-06 12:26:49 +01:00
Mark Olesen
e09298092d ENH: support negated regular expressions (#2283)
- extendes the prefix syntax to handle '!' values.

  For example,  "(?!).*processor.*" or "(?!i)inlet.*"
2021-12-03 17:10:22 +01:00
Mark Olesen
e9054ec636 COMP: consistent FatalError/FatalIOError exit types
STYLE: hostName() is short name, don't need parameter
2021-12-03 15:32:37 +01:00
Mark Olesen
fc6239d96e ENH: add expression support for scalar/vector expression lookups
- similar idea to swak timelines/lookuptables but combined together
  and based on Function1 for more flexibility.

  Specified as 'functions<scalar>' or 'functions<vector>'.
  For example,

  functions<scalar>
  {
      intakeType table ((0 0) (10 1.2));

      p_inlet
      {
          type        sine;
          frequency   3000;
          scale       50;
          level       101325;
      }
  }

  These can be referenced in the expressions as a nullary function or a
  unary function.

  Within the parser, the names are prefixed with "fn:" (function).
  It is thus possible to define "fn:sin()" that is different than
  the builtin "sin()" function.

     * A nullary call uses time value
       - Eg, fn:p_inlet()

     * A unary call acts as a remapper function.
       - Eg, fn:intakeType(6.25)
2021-11-26 12:24:35 +01:00
Mark Olesen
e6697edb52 ENH: robuster lemon parsing
- previously simply reused the scan token, which works fine for
  non-nested tokenizations but becomes too fragile with nesting.

  Now changed to use tagged unions that can be copied about
  and still retain some rudimentary knowledge of their types,
  which can be manually triggered with a destroy() call.

- provide an 'identifier' non-terminal as an additional catch
  to avoid potential leakage on parsing failure.

- adjust lemon rules and infrastructure:

  - use %token to predefine standard tokens.
    Will reduce some noise on the generated headers by retaining the
    order on the initial token names.

  - Define BIT_NOT, internal token rename NOT -> LNOT

- handle non-terminal vector values.
  Support vector::x, vector::y and vector::z constants

- permit fieldExpr access to time().
  Probably not usable or useful for an '#eval' expression,
  but useful for a Function1.

- provisioning for hooks into function calls. Establishes token
  names for next commit(s).
2021-11-26 12:24:35 +01:00
Andrew Heather
098aec4962 ENH: Function1's - added objectRegistry access 2021-11-26 11:22:36 +00:00
Mark Olesen
f078643f8c ENH: add blockFaces.vtp output for blockMesh -write-vtk 2021-11-25 20:02:09 +01:00
Mark Olesen
1804d3fed5 ENH: additional #word and #message dictionary directives (#2276)
- use `#word` to concatenate, expand content with the resulting string
  being treated as a word token. Can be used in dictionary or
  primitive context.

  In dictionary context, it fills the gap for constructing dictionary
  names on-the-fly. For example,

  ```
  #word "some_prefix_solverInfo_${application}"
  {
      type    solverInfo;
      libs    (utilityFunctionObjects);
      ...
  }
  ```

  The '#word' directive will automatically squeeze out non-word
  characters. In the block content form, it will also strip out
  comments. This means that this type of content should also work:

  ```
  #word {
     some_prefix_solverInfo
     /* Appended with application name (if defined) */
     ${application:+_}  // Use '_' separator
     ${application}     // The application
  }
  {
      type    solverInfo;
      libs    (utilityFunctionObjects);
      ...
  }
  ```
  This is admittedly quite ugly, but illustrates its capabilities.

- use `#message` to report expanded string content to stderr.
  For example,

  ```
  T
  {
     solver          PBiCG;
     preconditioner  DILU;
     tolerance       1e-10;
     relTol          0;
     #message "using solver: $solver"
  }
  ```
  Only reports on the master node.
2021-11-25 17:05:37 +01:00
Mark Olesen
fbd7b78999 ENH: make expressions::FieldAssociation a common enum
- use FACE_DATA (was SURFACE_DATA) for similarity with polySurface

ENH: add expression value enumerations and traits

- simple enumeration of standard types (bool, label, scalar, vector)
  that can be used as a value type-code for internal bookkeeping.

GIT: relocate pTraits into general traits/ directory
2021-11-23 12:53:45 +01:00