- add a '-SPDP' option
- remove the '-archOption' for forcing a '-m32' build on 64-bit
architecture, which is now considered too obscure.
Must edit files manually if this option is really required.
A set of libraries and executables creating a workflow for performing
gradient-based optimisation loops. The main executable (adjointOptimisationFoam)
solves the flow (primal) equations, followed by the adjoint equations and,
eventually, the computation of sensitivity derivatives.
Current functionality supports the solution of the adjoint equations for
incompressible turbulent flows, including the adjoint to the Spalart-Allmaras
turbulence model and the adjoint to the nutUSpaldingWallFunction, [1], [2].
Sensitivity derivatives are computed with respect to the normal displacement of
boundary wall nodes/faces (the so-called sensitivity maps) following the
Enhanced Surface Integrals (E-SI) formulation, [3].
The software was developed by PCOpt/NTUA and FOSS GP, with contributions from
Dr. Evangelos Papoutsis-Kiachagias,
Konstantinos Gkaragounis,
Professor Kyriakos Giannakoglou,
Andy Heather
and contributions in earlier version from
Dr. Ioannis Kavvadias,
Dr. Alexandros Zymaris,
Dr. Dimitrios Papadimitriou
[1] A.S. Zymaris, D.I. Papadimitriou, K.C. Giannakoglou, and C. Othmer.
Continuous adjoint approach to the Spalart-Allmaras turbulence model for
incompressible flows. Computers & Fluids, 38(8):1528–1538, 2009.
[2] E.M. Papoutsis-Kiachagias and K.C. Giannakoglou. Continuous adjoint methods
for turbulent flows, applied to shape and topology optimization: Industrial
applications. 23(2):255–299, 2016.
[3] I.S. Kavvadias, E.M. Papoutsis-Kiachagias, and K.C. Giannakoglou. On the
proper treatment of grid sensitivities in continuous adjoint methods for shape
optimization. Journal of Computational Physics, 301:1–18, 2015.
Integration into the official OpenFOAM release by OpenCFD
- was WM_PROJECT_API in the environment and FOAM_API in dictionaries.
Make these both consistently FOAM_API.
This is a non-breaking change, since the value of WM_PROJECT_API
(added in 1812) and/or FOAM_API is purely informative.
For the current correct values, always use
* foamEtcFile -show-api
* wmakeBuildInfo -show-api
Previously silently accepted '-o' as being equivalent to '-output',
but the former could be misinterpreted meaning an output file (which
it is not) instead of an output directory.
- was WM_PROJECT_API in the environment and FOAM_API in dictionaries.
Make these both consistently FOAM_API.
This is a non-breaking change, since the value of WM_PROJECT_API
(added in 1812) and/or FOAM_API is purely informative.
For the current correct values, always use
* foamEtcFile -show-api
* wmakeBuildInfo -show-api
- Use the OPENFOAM define (eg, 1806, 1812), which normally corresponds
to a major release, to define an API level. This remains consistent
within a release cycle and means that it is possible to manage
several sub-versions and continue to have a consistent lookup.
The current API value is updated automatically during the build
and cached as meta data for later use, even when the wmake/ directory
is missing or OpenFOAM has not yet be initialized.
The version information reported on program start or with -help
usage adjusted to reflect this. The build tag from git now also
carries the date as being more meaningful to trace than a hash
value.
- Update etc/bashrc and etc/cshrc to obtain the project directory
directly instead of via its prefix directory. The value obtained
corresponds to an absolute path, from which the prefix directory
can be obtained.
The combination of these changes removes the reliance on any
particular directory naming convention.
For example,
With an 1812 version (API level):
WM_PROJECT_VERSION=myVersion
installed as /some/path/somewhere/openfoam-mySandbox
This makes the -prefix, -foamInstall, -projectVersion, -version
values of foamEtcFiles, and similar entries for foamConfigurePaths
superfluous.
WM_PROJECT_INST_DIR is no longer required or used
ENH: improve handling and discovery of ThirdParty
- improve the flexibility and reusability of ThirdParty packs to cover
various standard use cases:
1. Unpacking initial release tar files with two parallel directories
- OpenFOAM-v1812/
- ThirdParty-v1812/
2. With an adjusted OpenFOAM directory name, for whatever reason
- OpenFOAM-v1812-myCustom/
- openfoam-1812-other-info/
3. Operating with/without ThirdParty directory
To handle these use cases, the following discovery is used.
Note PROJECT = the OpenFOAM directory `$WM_PROJECT_DIR`
PREFIX = the parent directory
VERSION = `$WM_PROJECT_VERSION`
API = `$WM_PROJECT_API`, as per `foamEtcFiles -show-api`
0. PROJECT/ThirdParty
- for single-directory installations
1. PREFIX/ThirdParty-VERSION
- this corresponds to the traditional approach
2. PREFIX/ThirdParty-vAPI
- allows for an updated value of VERSION (eg, v1812-myCustom)
without requiring a renamed ThirdParty. The API value
would still be '1812' and the original ThirdParty-v1812/
would be found.
3. PREFIX/ThirdParty-API
- this is the same as the previous example, but using an unadorned
API value. This also makes sense if the chosen version name also
uses the unadorned API value in its naming
(eg, 1812-patch190131, 1812.19W03)
4. PREFIX/ThirdParty-common
- permits maximum reuse for various versions, but only for
experienced user who are aware of potential version
incompatibilities
Directory existence is checked as is the presence of an Allwmake file
or a platforms/ directory. This reduces the potential of false positive
matches and limits the selection to directories that are either
with sources (has the Allwmake file), or pre-compiled binaries (has
the platforms/ directory).
If none of the explored directories are found to be suitable,
it reverts to using a PROJECT/ThirdParty dummy location since
this is within the project source tree and can be trusted to
have no negative side-effects.
ENH: add csh support to foamConfigurePaths
- this removes the previously experienced inconsistence in config file
contents.
REMOVED: foamExec
- was previously used when switching versions and before the
bashrc/cshrc discovery logic was added. It is now obsolete.
- check if the first argument corresponds to an OpenFOAM value for
'true' (as per Switch).
True == 't', 'y', 'true', 'yes', 'on'. Everything else is not true.
- when the first argument is '-dict', it initializes the value
with a query via foamDictionary.
Eg,
isTrue -dict mydict -entry parallel
==> value=$(foamDictionary mydict -entry parallel -value)
isTrue $value
a missing entry is silently treated as false.
ENH: add getNumberOfPatchFaces function in RunFunctions
- simple extraction of nFaces from boundary file for given patch/region
- was PREFIX/site, now PROJECT/site
This avoids several issues when installing OpenFOAM in clusters
without an intermediate OpenFOAM-specific installation prefix.
The 'site' directory may have a reserved meaning in these situations
and it is undesirable to 'leak' upwards into the parent directory to
look for configuration files.
Placing the default within the project directory avoids this.
Alternative locations can be given via the WM_PROJECT_SITE variable.
- provide edit for adjusting the ThirdParty and fallback site variables.
This is useful when packaging into a single directory, and possibly
without any ThirdParty dependencies.
- support '-prefix' (similar to auotconfig) as an alternative to
'-foamInstall'. Use this prefix to set the prefix directly.
Bypasses and disables the bash sourcing magic.
- generalize output text wrapping, use for usage notes
- add -help-man option for generating manpage content for any OpenFOAM
application or solver.
bin/tools/foamCreateManpage as helper
- The changes in foamCleanPath introduced for issues (#1007, #1008)
include quoted output of the cleaned environment variable.
When used in foamCreateModuleInclude, the quotes make their way
into the final environment. Avoid this by using the -sh-env
eval format instead.
- add environment extraction of MANPATH changes
- With argList::noFunctionObjects() we use the logic added in
4b93333292 (issue #352)
By removing the '-noFunctionObjects' option, we automatically
suppress the creation of function-objects via Time (with argList
as a parameter).
There is generally no need in these cases for an additional
runTime.functionObjects().off() statement
Use the argList::noFunctionObjects() for more direct configuration
and reduce unnecessary clutter in the -help information.
In previous versions, the -noFunctionObjects would have been redundant
anyhow, so we can also just ignore it now instead.
- since 1612, FOAM_INST_DIR and foamInstDir longer have any
special meanings when sourcing the bashrc or cshrc files.
Thus no need for special treatment in any of the dispatch wrappers.
Retained FOAM_INST_DIR as (unexported) variable in etc/bashrc,
just in case people are using patched versions of etc/bashrc
as part of their installation.
ENH: relax prefix restrictions on foamCreateVideo (issue #904)
- shift the implicit '.' to be part of the default prefix. This allows
things like "-image myimages_00" to work as might be expected.
- Don't remove the constant/polyMesh directory if it contains a
blockMeshDict or blockMeshDict.m4 file. Offer a reminder that
system/ is the normal place for it.
- add additional control via a Foam::infoDetailLevel flag, which is
supported by a 'DetailLevel' macro. Eg,
DetailLevel << "some information" << nl
- When infoDetailLevel is zero, the stdout for all Foam::system() calls
are also redirected to stderr to prevent child output from
appearing on the parent.
- close stdin before exec in system call.
- The additional output generated by #calc directives in the
controlDict or decomposeParDict causes issues for the RunFunctions
extraction of 'application' and 'numberOfSubdomains'.
Avoid by using -disableFunctionEntries, which also has the side-effect
of disabling '#include'.
- now report as "min = XX max = YY average = ZZ"
instead of as "min/max/average = XX, YY, ZZ"
this makes it easier to parse any particular value
(eg, with foamLog)
- generalize some of the library extensions (.so vs .dylib).
Provide as wmake 'sysFunctions'
- added note about unsupported/incomplete system support
- centralize detection of ThirdParty packages into wmake/ subdirectory
by providing a series of scripts in the spirit of GNU autoconfig.
For example,
have_boost, have_readline, have_scotch, ...
Each of the `have_<package>` scripts will generally provide the
following type of functions:
have_<package> # detection
no_<package> # reset
echo_<package> # echoing
and the following type of variables:
HAVE_<package> # unset or 'true'
<package>_ARCH_PATH # root for <package>
<package>_INC_DIR # include directory for <package>
<package>_LIB_DIR # library directory for <package>
This simplifies the calling scripts:
if have_metis
then
wmake metisDecomp
fi
As well as reducing clutter in the corresponding Make/options:
EXE_INC = \
-I$(METIS_INC_DIR) \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
-L$(METIS_LIB_DIR) -lmetis
Any additional modifications (platform-specific or for an external build
system) can now be made centrally.
- export library path for gmp/mpfr from CGAL config files.
This is required when non-system gmp/mpfr libraries are being
used, but not using a ThirdParty compiler installation.
- automatically handle lib/ vs lib64/ (eg, for central installations)
for packages such as boost, CGAL, etc. While the ThirdParty
compilation of these will normally land in lib64/, this may not be
the case when they are supplied by another means.
- reworked the handling of foamEtcFile and foamCleanPath for less
clutter in the configuration files.
Added the bin/tools/lib-dir script to handle logic that is
too complex to easily manage in csh.
- unknown options or missing option values now emit a shorter message
without the entire usage. This makes it easier to identify the errors
and is better aligned with the behaviour of GNU system tools.
====
$ simpleFoam -case
Using: OpenFOAM-plus (see www.OpenFOAM.com)
Build: plus-01234
Error: option '-case' requires an argument
See 'simpleFoam -help' for usage
====
- provide for reduced (-help) and full (-help-full) usage information.
In many cases the reduced usage provided sufficient and easier
to find the information.
- make -srcDoc an alias for -doc-source
- no warnings about option aliases for future dates.
- this reduces the number of functions and allows lazy loading of
completion options, which makes it easy to quickly add any other
OpenFOAM application in completion.
The generic '_of_complete_' function handles (bash) completion for
any OpenFOAM application. On the first call for any particular
application, it retrieves the available options from the application
help output and adds this information to its environmental cache for
subsequent use.
- Tcsh completion uses the same function via a bash wrapper.
But since its wrapper is transient, the on-the-fly generation would
be less efficient. For this case, a pre-generated completion_cache
can be used, which is generated with
bin/tools/foamCreateCompletionCache
- handles the case where we are currently completing something that
does not appear to be an option. For example,
foamDictionary -expanded someD[TAB]
should complete the filename, not present more options.
- use complete -o filenames, dropped -o nospace to make it more responsive.
- restructure completion code to use a unified backend, which makes it easier
understand, maintain and re-use.
- foamCreateBashCompletions now simply outputs to a stdout, and allows
quick generation of completion of single applications.
- add -fileHandler completion in anticipation of future changes there.
- relocated as etc/config.s/bash_completion to prevent inadvertently
having two versions (.com, .org) installed at the same time.
- allows configuration without an environment variable.
For compatibility still respect FOAM_SIGFPE and FOAM_SETNAN
env-variables
- The env-variables are now treated as true/false switch values.
Previously there was just a check for env exists or not, but this
can be fairly fragile for a user's environment.
- disable automatically upgrading copyrights in files since changes to
not automatically imply a change in copyright. Eg, fixing a typo in
comments, or changing a variable from 'loopI' to 'loopi' etc.
- can be useful with compiling additional OpenFOAM programs
that use FOAM_USER_APPBIN, FOAM_USER_LIBBIN for their build,
to avoid conflicts with the normal user bin/lib files.
- or to force relocation of FOAM_SITE_APPBIN, FOAM_SITE_LIBBIN
during packaging of OpenFOAM
- handle sourcing bashrc with a relative path (issue #383)
- handle sourcing from bash and zsh.
Still need manual intervention when sourcing dash, sh, or ksh.
- replace grep in etc/cshrc with sed only
- logical instead of physical path for WM_PROJECT_DIR (issue #431).
Doesn't seem to be possible for csh/tcsh.
* Continue using physical locations when comparing directories,
but not for the top-level FOAM_INST_DIR, WM_PROJECT_DIR.
- relocate WM_CC, WM_CXX overrides from etc/config.*/compiler
to etc/config.*/settings to ensure that they are left untouched
when etc/config.sh/compiler is sourced while making third-party
packages (eg, gcc, llvm, CGAL).
- provide fallback FOAM_TUTORIALS setting in RunFunctions
STYLE: remove "~OpenFOAM" fallback as being too rare, non-obvious
- only occurs in combination with distributedTriSurfaceMesh in snappy.
- workaround similar to that previously used for surfaceRedistributePar
(issue #60).
Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
- relied on 'export' keyword, which was removed in commit b844867112
--
ENH: foamConfigurePaths support for additional items:
-label 32|64 specify label size
-system name specify 'system' compiler to be used
-thirdParty name specify 'ThirdParty' compiler to be used
-boost ver specify boost_version
-boostArchPath dir specify BOOST_ARCH_PATH
-cgal ver specify cgal_version
-cgalArchPath dir specify CGAL_ARCH_PATH
-clang ver specify clang_version for ThirdParty Clang
-cmake ver specify cmake_version
-fftw ver specify fffw_version
-fftwArchPath dir specify FFTW_ARCH_PATH
-metis ver specify METIS_VERSION
-metisArchPath dir specify METIS_ARCH_PATH
- include cleanup of other postProcessing directories:
* Ensight, EnSight, ensightWrite
- don't need to remove files that cleanSnappyFiles already removed:
* 0/cellLevel 0/pointLevel
- bundle removal of constant/ items together:
* constant/cellDecomposition constant/polyMesh constant/tetDualMesh
- Can occur with some user names, or mounted paths.
Resolve by using '?' for the separation character.
Since '?' is a shell-glob, it is highly unlikely to occur appear in
filenames. Additionally, it is not a meta-character in standard sed,
nor in the GNU extension (which uses '\?').
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2267
1. Spaced ending of multi-level template parameters are not allowed, such as:
List<List<scalar> >
which instead should be:
List<List<scalar>>
2. The use of the 'NULL' macro should be replaced by 'nullptr'
Provides efficient integration of complex laminar reaction chemistry,
combining the advantages of automatic dynamic specie and reaction
reduction with ISAT (in situ adaptive tabulation). The advantages grow
as the complexity of the chemistry increases.
References:
Contino, F., Jeanmart, H., Lucchini, T., & D’Errico, G. (2011).
Coupling of in situ adaptive tabulation and dynamic adaptive chemistry:
An effective method for solving combustion in engine simulations.
Proceedings of the Combustion Institute, 33(2), 3057-3064.
Contino, F., Lucchini, T., D'Errico, G., Duynslaegher, C.,
Dias, V., & Jeanmart, H. (2012).
Simulations of advanced combustion modes using detailed chemistry
combined with tabulation and mechanism reduction techniques.
SAE International Journal of Engines,
5(2012-01-0145), 185-196.
Contino, F., Foucher, F., Dagaut, P., Lucchini, T., D’Errico, G., &
Mounaïm-Rousselle, C. (2013).
Experimental and numerical analysis of nitric oxide effect on the
ignition of iso-octane in a single cylinder HCCI engine.
Combustion and Flame, 160(8), 1476-1483.
Contino, F., Masurier, J. B., Foucher, F., Lucchini, T., D’Errico, G., &
Dagaut, P. (2014).
CFD simulations using the TDAC method to model iso-octane combustion
for a large range of ozone seeding and temperature conditions
in a single cylinder HCCI engine.
Fuel, 137, 179-184.
Two tutorial cases are currently provided:
+ tutorials/combustion/chemFoam/ic8h18_TDAC
+ tutorials/combustion/reactingFoam/laminar/counterFlowFlame2D_GRI_TDAC
the first of which clearly demonstrates the advantage of dynamic
adaptive chemistry providing ~10x speedup,
the second demonstrates ISAT on the modest complex GRI mechanisms for
methane combustion, providing a speedup of ~4x.
More tutorials demonstrating TDAC on more complex mechanisms and cases
will be provided soon in addition to documentation for the operation and
settings of TDAC. Also further updates to the TDAC code to improve
consistency and integration with the rest of OpenFOAM and further
optimize operation can be expected.
Original code providing all algorithms for chemistry reduction and
tabulation contributed by Francesco Contino, Tommaso Lucchini, Gianluca
D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane Backaert.
Implementation updated, optimized and integrated into OpenFOAM-dev by
Henry G. Weller, CFD Direct Ltd with the help of Francesco Contino.
RunFunctions: Added "isTest()" argument parsing function
tutorials: Updated Allrun scripts to propagate the "-test" option
tutorials: Removed the lower Alltest scripts and updated the Allrun to
use the "isTest()" function to handle test-specific operation
in decomposeParDict.
This default number of processors may be overridden by the new "-np"
option to runParallel which must be specified before the application
name e.g.:
runParallel -np 4 pisoFoam
- redistributePar to have almost (complete) functionality of decomposePar+reconstructPar
- low-level distributed Field mapping
- support for mapping surfaceFields (including flipping faces)
- support for decomposing/reconstructing refinement data
foamRunTutorials now accepts two arguments:
-test : Preferentially execute Alltest, if present, over Allrun.
-skipFirst : Skip Alltest/Allrun at the top level to prevent recursion
Added because some tutorials are not dependent on controlDict and take
a long time.
