- unfriend HashSet, HashTable IO operators
- global min(), max(), minMax() functions taking a labelHashSet and an
optional limit. For example,
labelHashSet set = ...;
Info<< "min is " << min(set) << nl;
Info<< "max (non-negative) " << max(set, 0) << nl;
- make HashTable iterator '->' dereferencing more consistent by also
supporting non-pointer types as well.
- read HashTable values in-situ to avoid copying
A set of libraries and executables creating a workflow for performing
gradient-based optimisation loops. The main executable (adjointOptimisationFoam)
solves the flow (primal) equations, followed by the adjoint equations and,
eventually, the computation of sensitivity derivatives.
Current functionality supports the solution of the adjoint equations for
incompressible turbulent flows, including the adjoint to the Spalart-Allmaras
turbulence model and the adjoint to the nutUSpaldingWallFunction, [1], [2].
Sensitivity derivatives are computed with respect to the normal displacement of
boundary wall nodes/faces (the so-called sensitivity maps) following the
Enhanced Surface Integrals (E-SI) formulation, [3].
The software was developed by PCOpt/NTUA and FOSS GP, with contributions from
Dr. Evangelos Papoutsis-Kiachagias,
Konstantinos Gkaragounis,
Professor Kyriakos Giannakoglou,
Andy Heather
and contributions in earlier version from
Dr. Ioannis Kavvadias,
Dr. Alexandros Zymaris,
Dr. Dimitrios Papadimitriou
[1] A.S. Zymaris, D.I. Papadimitriou, K.C. Giannakoglou, and C. Othmer.
Continuous adjoint approach to the Spalart-Allmaras turbulence model for
incompressible flows. Computers & Fluids, 38(8):1528–1538, 2009.
[2] E.M. Papoutsis-Kiachagias and K.C. Giannakoglou. Continuous adjoint methods
for turbulent flows, applied to shape and topology optimization: Industrial
applications. 23(2):255–299, 2016.
[3] I.S. Kavvadias, E.M. Papoutsis-Kiachagias, and K.C. Giannakoglou. On the
proper treatment of grid sensitivities in continuous adjoint methods for shape
optimization. Journal of Computational Physics, 301:1–18, 2015.
Integration into the official OpenFOAM release by OpenCFD
- when running in serial but within a processor directory,
argList::globalPath() is to be used instead of Time.globalPath()
For other cases there is no difference.
Integration of VOF MULES new interfaces. Update of VOF solvers and all instances
of MULES in the code.
Integration of reactingTwoPhaseEuler and reactingMultiphaseEuler solvers and sub-models
Updating reactingEuler tutorials accordingly (most of them tested)
New eRefConst thermo used in tutorials. Some modifications at thermo specie level
affecting mostly eThermo. hThermo mostly unaffected
New chtMultiRegionTwoPhaseEulerFoam solver for quenching and tutorial.
Phases sub-models for reactingTwoPhaseEuler and reactingMultiphaseEuler were moved
to src/phaseSystemModels/reactingEulerFoam in order to be used by BC for
chtMultiRegionTwoPhaseEulerFoam.
Update of interCondensatingEvaporatingFoam solver.
ENH: define addition/subtraction operations for scalar and complex
- required since construct complex from scalar is explicit
- additional tests in Test-complex
- forces c++DBUG='-DFULLDEBUG -g -O0' for the compilation, to allow
localized debugging during development without file editing and
while retaining the WM_COMPILE_OPTION (eg, Opt)
Note that switching between 'wmake' and 'wmake -debug' will not
cause existing targets to be rebuilt. As before, these are driven by
the dependencies. An intermediate wclean may thus be required.
- generalize identity matrix constructors for non-scalar types
- add constructors using labelPair for the row/column sizing information.
For a SquareMatrix, this provides an unambiguous parameter resolution.
- reuse assignment operators
STYLE: adjust matrix comments
- when windows portable executables (.exe or .dll) files are loaded,
their dependent libraries not fully loaded. For OpenFOAM this means
that the static constructors which are responsible for populating
run-time selection tables are not triggered, and most of the run-time
selectable models will simply not be available.
Possible Solution
=================
Avoid this problem by defining an additional library symbol such as
the following:
extern "C" void libName_Load() {}
in the respective library, and tag this symbol as 'unresolved' for
the linker so that it will attempt to resolve it at run-time by
loading the known libraries until it finds it. The link line would
resemble the following:
-L/some/path -llibName -ulibName_Load
Pros:
- Allows precise control of forced library loading
Cons:
- Moderately verbose adjustment of some source files (even with macro
wrapping for the declaration).
- Adjustment of numerous Make/options files and somewhat ad hoc
in nature.
- Requires additional care when implementing future libraries and/or
applications.
- This is the solution taken by the symscape patches (Richard Smith)
Possible Solution
=================
Avoid this problem by simply force loading all linked libraries.
This is done by "scraping" the information out of the respective
Make/options file (after pre-processing) and using that to define
the library list that will be passed to Foam::dlOpen() at run-time.
Pros:
- One-time (very) minimal adjustment of the sources and wmake toolchain
- Automatically applies to future applications
Cons:
- Possibly larger memory footprint of application (since all dependent
libraries are loaded).
- Possible impact on startup time (while loading libraries)
- More sensitive to build failures. Since the options files are
read and modified based on the existence of the dependent
libraries as a preprocessor step, if the libraries are initially
unavailable for the first attempt at building the application,
the dependencies will be inaccurate for later (successful) builds.
- This is solution taken by the bluecape patches (Bruno Santos)
Adopted Solution
================
The approach taken by Bruno was adopted in a modified form since
this appears to be the most easily maintained.
Additional Notes
================
It is always possible to solve this problem by defining a corresponding
'libs (...)' entry in the case system/controlDict, which forces a dlOpen
of the listed libraries. This is obviously less than ideal for large-scale
changes, but can work to resolve an individual problem.
The peldd utility (https://github.com/gsauthof/pe-util), which is
also packaged as part of MXE could provide yet another alternative.
Like ldd it can be used to determine the library dependencies of
binaries or libraries. This information could be used to define an
additional load layer for Windows.
- add iterators, begin/end, empty() methods for STL behaviour.
Use standard algorithms where possible
* std::fill, std::copy
* std::min_element, std::max_element
- access methods consistent with other OpenFOAM containers:
* data(), cdata(), uniform()
- Use ListPolicy to impose output line breaks
- Can recover matrix storage for re-use elsewhere.
For example, to populate values with 2D i-j addressing and later
release it as flat linear storage.
- construct/assign moveable
- added minMax() function for Matrix
- additional inplace +=, -=, *=, /= operations
- add named methods at() and rowData() to Matrix.
Allows a better distinction between linear and row-based addressing
- low-level matrix solve on List/UList instead of Field
- can be used to check the validity of input values.
Example:
dict.getCheck<label>("nIters", greaterOp1<label>(0));
dict.getCheck<scalar>("relax", scalarMinMax::zero_one());
- use 'get' prefix for more regular dictionary methods.
Eg, getOrDefault() as alternative to lookupOrDefault()
- additional ops for convenient construction of predicates
ENH: make dictionary writeOptionalEntries integer
- allow triggering of Fatal if default values are used
ENH: additional scalarRange static methods: ge0, gt0, zero_one
- use GREAT instead of VGREAT for internal placeholders
- additional MinMax static methods: gt, le
