Commit Graph

288 Commits

Author SHA1 Message Date
Andrew Heather
ff132ff5f6 ENH: orientedFields - updated mapping and parallel utils 2017-05-04 15:32:51 +01:00
Andrew Heather
8886e90870 ENH: Progagted oriented() flag through field mapping 2017-04-24 13:05:19 +01:00
Mark Olesen
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00
mattijs
23a6cadfa6 BUG: redistributePar: remove inconsistent *ProcAddressing. Fixes #351. 2016-12-19 12:58:49 +00:00
Mark Olesen
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
mattijs
db3699f8ab ENH: redistributePar: remove shm data 2016-12-06 09:10:30 +00:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
2016-11-24 11:26:03 +01:00
mattijs
d9740aa33e ENH: redistributePar: remove pointFields 2016-11-21 17:20:34 +00:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
mattijs
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
Mark Olesen
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265).
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
2016-10-25 18:19:19 +02:00
Mark Olesen
3e0e4532fd STYLE: minor adjustments to doxygen comments 2016-10-04 09:16:08 +02:00
Andrew Heather
bd0e982d99 MRG: Initial commit after latest Foundation merge 2016-09-30 11:16:28 +01:00
Andrew Heather
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
Henry Weller
9e1e9011a5 decomposePar: Corrected construction of cloud for processors
Resolves bug-report http://bugs.openfoam.org/view.php?id=2239
2016-09-21 17:19:58 +01:00
Andrew Heather
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
Henry Weller
5b1ae76abf reconstructPar: Handle the copy of the 'uniform' directory when only 1 region is reconstructed
Resolves bug-report http://bugs.openfoam.org/view.php?id=2186
2016-08-09 16:42:48 +01:00
Henry Weller
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
Mark Olesen
70ba9e0cc0 For issue #202, re-adjust commit c3ec65d35b to use zero-gradient instead
- consistent with approach used elsewhere. Generates smaller files.
2016-08-02 21:56:40 +02:00
Mark Olesen
c3ec65d35b ENH: decomposePar -cellDist misses patches (issue #202)
- Propagate cellDist information from internal to patch fields too

NOTE: uses C++11 'auto' and a range-based for loop
2016-08-02 16:39:20 +02:00
Henry Weller
43df3e4192 reconstructPar: Added support for decomposing "uniform" directories in multi-region cases
Resolves bug-report http://bugs.openfoam.org/view.php?id=2156
2016-07-20 18:47:58 +01:00
Henry Weller
ef54ab7c59 decomposePar: Added support for decomposing "uniform" directories in multi-region cases
Resolves bug-report http://bugs.openfoam.org/view.php?id=2156
2016-07-20 16:41:45 +01:00
Henry Weller
ab84d6941f Updated template formatting to C++11 2016-07-12 20:03:29 +01:00
Henry Weller
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
mattijs
8bdc7e01bf Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-06-29 10:43:51 +01:00
mattijs
49e4475b46 STYLE: redistributePar: indentation 2016-06-29 10:43:36 +01:00
mattijs
ca9923932a BUG: decomposePar: force creation of uniform dir. Fixes #163 2016-06-27 11:18:06 +01:00
Henry Weller
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
d6ce71f39a reconstructPar: Added '-noFields' option 2016-05-17 09:25:29 +01:00
Henry Weller
ce0cd35185 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
Henry Weller
32762aa1f9 Change field loop index from "fieldI" to "fieldi" 2016-05-02 18:20:48 +01:00
Henry Weller
81f31acbb3 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
3c053c2fe6 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField()
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
2016-04-30 21:40:09 +01:00
Andrew Heather
b9313ef2fe ENH: Consistency updates after Foundation merge and code tidying 2016-04-25 16:46:56 +01:00
Henry Weller
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
andy
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
Henry Weller
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
2d5ff31649 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
Henry Weller
cb65ba71d7 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
Andrew Heather
c35bcc05f4 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-06-27 23:22:54 +01:00
Andrew Heather
efb39a8790 ENH: (further) Doxygen documentation updates for module support 2016-06-27 20:34:19 +01:00
Henry Weller
99a10ecea6 Boundary conditions: Added extrapolatedCalculatedFvPatchField
To be used instead of zeroGradientFvPatchField for temporary fields for
which zero-gradient extrapolation is use to evaluate the boundary field
but avoiding fields derived from temporary field using field algebra
inheriting the zeroGradient boundary condition by the reuse of the
temporary field storage.

zeroGradientFvPatchField should not be used as the default patch field
for any temporary fields and should be avoided for non-temporary fields
except where it is clearly appropriate;
extrapolatedCalculatedFvPatchField and calculatedFvPatchField are
generally more suitable defaults depending on the manner in which the
boundary values are specified or evaluated.

The entire OpenFOAM-dev code-base has been updated following the above
recommendations.

Henry G. Weller
CFD Direct
2016-02-20 22:44:37 +00:00
Henry Weller
472fa0674a Update headers 2016-02-02 20:09:58 +00:00
Henry Weller
8b9698ad43 processorPolyPatch, processorCyclicPolyPatch: Rationalized the construction of the patch name
This change ensures that these patches are named consistently so that
they can be looked-up as required in e.g. patchMeanVelocityForce
2016-02-02 20:07:16 +00:00
mattijs
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
2016-01-25 16:29:04 +00:00
mattijs
e424059208 ENH: glboal file handling: initial commit
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
2016-01-25 13:03:15 +00:00
Henry Weller
56fa7c0906 Update code to use the simpler C++11 template syntax removing spaces between closing ">"s 2016-01-10 22:41:16 +00:00
Henry Weller
4eba393fe1 Update code to use the simpler C++11 template syntax 2016-01-10 19:20:16 +00:00
Andrew Heather
f0c3e8d599 STYLE: Updated version to 'plus' 2015-12-22 23:14:17 +00:00
mattijs
8864223aed ENH: copyright: make consistent with OpenFOAM-history 2015-12-19 14:22:30 +00:00