738 lines
20 KiB
C
738 lines
20 KiB
C
/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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\\ / O peration |
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\\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation
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\\/ M anipulation | Copyright (C) 2016-2018 OpenCFD Ltd.
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-------------------------------------------------------------------------------
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License
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This file is part of OpenFOAM.
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OpenFOAM is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
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ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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for more details.
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You should have received a copy of the GNU General Public License
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along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
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Application
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subsetMesh
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Group
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grpMeshManipulationUtilities
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Description
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Create a mesh subset for a particular region of interest based on a
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cellSet or cellZone.
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See setSet/topoSet utilities on how to define select cells based on
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various shapes.
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Will subset all points, faces and cells needed to make a sub-mesh,
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but not preserve attached boundary types.
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\*---------------------------------------------------------------------------*/
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#include "fvMeshSubset.H"
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#include "argList.H"
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#include "IOobjectList.H"
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#include "volFields.H"
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#include "topoDistanceData.H"
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#include "FaceCellWave.H"
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#include "cellSet.H"
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#include "faceSet.H"
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#include "pointSet.H"
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#include "ReadFields.H"
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#include "processorMeshes.H"
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using namespace Foam;
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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// Get the exposed patchId or define the exposedPatchName in fvMeshSubset
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label getExposedPatchId(const polyMesh& mesh, const word& patchName)
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{
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const label patchId = mesh.boundaryMesh().findPatchID(patchName);
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if (patchId == -1)
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{
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fvMeshSubset::exposedPatchName = patchName;
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}
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Info<< "Adding exposed internal faces to "
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<< (patchId == -1 ? "new" : "existing")
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<< " patch \"" << patchName << "\"" << nl << endl;
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return patchId;
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}
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labelList nearestPatch(const polyMesh& mesh, const labelList& patchIDs)
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{
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const polyBoundaryMesh& pbm = mesh.boundaryMesh();
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// Count number of faces in exposedPatchIDs
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label nFaces = 0;
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for (const label patchi : patchIDs)
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{
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nFaces += pbm[patchi].size();
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}
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// Field on cells and faces.
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List<topoDistanceData> cellData(mesh.nCells());
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List<topoDistanceData> faceData(mesh.nFaces());
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// Start of changes
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labelList patchFaces(nFaces);
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List<topoDistanceData> patchData(nFaces);
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nFaces = 0;
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for (const label patchi : patchIDs)
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{
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const polyPatch& pp = pbm[patchi];
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forAll(pp, i)
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{
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patchFaces[nFaces] = pp.start()+i;
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patchData[nFaces] = topoDistanceData(patchi, 0);
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++nFaces;
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}
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}
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// Propagate information inwards
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FaceCellWave<topoDistanceData> deltaCalc
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(
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mesh,
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patchFaces,
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patchData,
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faceData,
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cellData,
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mesh.globalData().nTotalCells()+1
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);
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// And extract
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labelList nearest(mesh.nFaces());
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bool haveWarned = false;
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forAll(faceData, faceI)
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{
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if (!faceData[faceI].valid(deltaCalc.data()))
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{
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if (!haveWarned)
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{
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WarningInFunction
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<< "Did not visit some faces, e.g. face " << faceI
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<< " at " << mesh.faceCentres()[faceI] << nl
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<< "Using patch " << patchIDs[0] << " as nearest"
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<< endl;
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haveWarned = true;
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}
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nearest[faceI] = patchIDs[0];
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}
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else
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{
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nearest[faceI] = faceData[faceI].data();
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}
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}
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return nearest;
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}
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//
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// Subset field-type, availability information cached
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// in the availableFields hashtable.
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//
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template<class Type, template<class> class PatchField, class GeoMesh>
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void subsetFields
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(
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const fvMeshSubset& subsetter,
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HashTable<wordHashSet>& availableFields,
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PtrList<GeometricField<Type, PatchField, GeoMesh>>& subFields
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)
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{
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typedef GeometricField<Type, PatchField, GeoMesh> FieldType;
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const word fieldType = FieldType::typeName;
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const wordList fieldNames = availableFields(fieldType).sortedToc();
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subFields.setSize(fieldNames.size());
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const fvMesh& baseMesh = subsetter.baseMesh();
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label nFields = 0;
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for (const word& fieldName : fieldNames)
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{
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if (!nFields)
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{
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Info<< "Subsetting " << fieldType << " (";
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}
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else
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{
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Info<< ' ';
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}
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Info<< fieldName;
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FieldType fld
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(
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IOobject
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(
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fieldName,
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baseMesh.time().timeName(),
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baseMesh,
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IOobject::MUST_READ,
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IOobject::NO_WRITE
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),
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baseMesh
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);
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subFields.set(nFields, subsetter.interpolate(fld));
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// Subsetting adds 'subset' prefix - rename to match original.
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subFields[nFields].rename(fieldName);
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++nFields;
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}
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if (nFields)
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{
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Info<< ')' << nl;
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}
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}
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template<class Type>
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void subsetPointFields
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(
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const fvMeshSubset& subsetter,
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const pointMesh& pMesh,
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HashTable<wordHashSet>& availableFields,
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PtrList<GeometricField<Type, pointPatchField, pointMesh>>& subFields
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)
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{
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typedef GeometricField<Type, pointPatchField, pointMesh> FieldType;
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const word fieldType = FieldType::typeName;
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const wordList fieldNames = availableFields(fieldType).sortedToc();
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subFields.setSize(fieldNames.size());
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const fvMesh& baseMesh = subsetter.baseMesh();
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label nFields = 0;
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for (const word& fieldName : fieldNames)
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{
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if (!nFields)
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{
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Info<< "Subsetting " << fieldType << " (";
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}
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else
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{
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Info<< ' ';
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}
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Info<< fieldName;
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FieldType fld
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(
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IOobject
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(
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fieldName,
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baseMesh.time().timeName(),
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baseMesh,
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IOobject::MUST_READ,
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IOobject::NO_WRITE
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),
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pMesh
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);
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subFields.set(nFields, subsetter.interpolate(fld));
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// Subsetting adds 'subset' prefix - rename to match original.
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subFields[nFields].rename(fieldName);
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++nFields;
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}
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if (nFields)
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{
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Info<< ')' << nl;
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}
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}
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template<class Type>
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void subsetDimensionedFields
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(
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const fvMeshSubset& subsetter,
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HashTable<wordHashSet>& availableFields,
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PtrList<DimensionedField<Type, volMesh>>& subFields
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)
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{
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typedef DimensionedField<Type, volMesh> FieldType;
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const word fieldType = FieldType::typeName;
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const wordList fieldNames = availableFields(fieldType).sortedToc();
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subFields.setSize(fieldNames.size());
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const fvMesh& baseMesh = subsetter.baseMesh();
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label nFields = 0;
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for (const word& fieldName : fieldNames)
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{
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if (!nFields)
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{
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Info<< "Subsetting " << fieldType << " (";
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}
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else
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{
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Info<< ' ';
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}
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Info<< fieldName;
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FieldType fld
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(
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IOobject
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(
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fieldName,
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baseMesh.time().timeName(),
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baseMesh,
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IOobject::MUST_READ,
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IOobject::NO_WRITE
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),
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baseMesh
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);
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subFields.set(nFields, subsetter.interpolate(fld));
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// Subsetting adds 'subset' prefix - rename to match original.
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subFields[nFields].rename(fieldName);
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++nFields;
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}
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if (nFields)
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{
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Info<< ')' << nl;
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}
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}
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template<class TopoSet>
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void subsetTopoSets
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(
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const fvMesh& mesh,
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const IOobjectList& objects,
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const labelList& map,
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const fvMesh& subMesh,
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PtrList<TopoSet>& subSets
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)
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{
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// Read original sets
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PtrList<TopoSet> sets;
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ReadFields<TopoSet>(objects, sets);
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subSets.setSize(sets.size());
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forAll(sets, seti)
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{
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const TopoSet& set = sets[seti];
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Info<< "Subsetting " << set.type() << " " << set.name() << endl;
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labelHashSet subset(2*min(set.size(), map.size()));
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forAll(map, i)
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{
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if (set.found(map[i]))
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{
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subset.insert(i);
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}
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}
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subSets.set
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(
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seti,
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new TopoSet
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(
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subMesh,
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set.name(),
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std::move(subset),
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IOobject::AUTO_WRITE
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)
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);
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}
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}
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int main(int argc, char *argv[])
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{
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argList::addNote
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(
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"Create a mesh subset for a particular region of interest based on a"
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" cellSet or cellZone(s) specified as the first command argument.\n"
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"See setSet/topoSet utilities on how to select cells based on"
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" various shapes."
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);
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#include "addOverwriteOption.H"
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#include "addRegionOption.H"
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argList::addArgument("setOrZoneName");
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argList::addOption
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(
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"patch",
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"name",
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"Add exposed internal faces to specified patch "
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"instead of \"oldInternalFaces\""
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);
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argList::addOption
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(
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"patches",
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"wordRes",
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"Add exposed internal faces to closest of specified patches "
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"instead of \"oldInternalFaces\""
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);
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argList::addBoolOption
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(
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"zone",
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"Subset with cellZone(s) instead of cellSet. "
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"The command argument may be a list of words or regexs"
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);
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argList::addOption
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(
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"resultTime",
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"time",
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"Specify a time for the resulting mesh"
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);
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argList::noFunctionObjects(); // Never use function objects
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#include "setRootCase.H"
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#include "createTime.H"
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#include "createNamedMesh.H"
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// arg[1] = word (cellSet) or wordRes (cellZone)
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// const word selectionName = args[1];
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word meshInstance = mesh.pointsInstance();
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word fieldsInstance = runTime.timeName();
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const bool useCellZone = args.found("zone");
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const bool overwrite = args.found("overwrite");
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const bool specifiedInstance = args.readIfPresent
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(
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"resultTime",
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fieldsInstance
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);
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if (specifiedInstance)
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{
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// Set both mesh and field to this time
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meshInstance = fieldsInstance;
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}
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// Default exposed patch id
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labelList exposedPatchIDs(one(), -1);
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if (args.found("patches"))
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{
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const wordRes patchNames(args.getList<wordRe>("patches"));
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if (patchNames.size() == 1 && patchNames.first().isLiteral())
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{
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exposedPatchIDs.first() =
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getExposedPatchId(mesh, patchNames.first());
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}
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else
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{
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exposedPatchIDs =
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mesh.boundaryMesh().patchSet(patchNames).sortedToc();
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Info<< "Adding exposed internal faces to nearest of patches "
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<< flatOutput(patchNames) << nl << endl;
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if (exposedPatchIDs.empty())
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{
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FatalErrorInFunction
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<< nl << "No patches matched. Patches: "
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<< mesh.boundaryMesh().names() << nl
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<< exit(FatalError);
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}
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}
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}
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else if (args.found("patch"))
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{
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exposedPatchIDs.first() =
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getExposedPatchId(mesh, args.opt<word>("patch"));
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}
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else
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{
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Info<< "Adding exposed internal faces to patch \""
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<< fvMeshSubset::exposedPatchName
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<< "\" (created if necessary)" << nl
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<< nl;
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}
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autoPtr<cellSet> cellSetPtr;
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// arg[1] can be a word (for cellSet) or wordRes (for cellZone)
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wordRes zoneNames;
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if (useCellZone)
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{
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List<wordRe> selectionNames = args.getList<wordRe>(1);
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zoneNames.transfer(selectionNames);
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Info<< "Using cellZone " << flatOutput(zoneNames) << nl << endl;
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if (mesh.cellZones().findIndex(zoneNames) == -1)
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{
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FatalErrorInFunction
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<< "No cellZones found: " << flatOutput(zoneNames) << nl << nl
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<< exit(FatalError);
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}
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}
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else
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{
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const word selectionName = args[1];
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Info<< "Using cellSet " << selectionName << nl << endl;
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cellSetPtr = autoPtr<cellSet>::New(mesh, selectionName);
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}
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// Mesh subsetting engine
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fvMeshSubset subsetter(mesh);
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{
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bitSet selectedCells =
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(
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cellSetPtr
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? BitSetOps::create(mesh.nCells(), *cellSetPtr)
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: mesh.cellZones().selection(zoneNames)
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);
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if (exposedPatchIDs.size() == 1)
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{
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// Single patch for exposed faces
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subsetter.setCellSubset
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(
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selectedCells,
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exposedPatchIDs.first(),
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true
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);
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}
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else
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{
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// The nearest patch per face
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labelList nearestExposedPatch(nearestPatch(mesh, exposedPatchIDs));
|
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labelList exposedFaces
|
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(
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subsetter.getExposedFaces(selectedCells, true)
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);
|
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subsetter.setCellSubset
|
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(
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selectedCells,
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exposedFaces,
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labelUIndList(nearestExposedPatch, exposedFaces)(),
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true
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);
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}
|
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Info<< "Subset "
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<< returnReduce(subsetter.subMesh().nCells(), sumOp<label>())
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<< " of "
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<< returnReduce(mesh.nCells(), sumOp<label>())
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<< " cells" << nl << nl;
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}
|
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|
|
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IOobjectList objects(mesh, runTime.timeName());
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HashTable<wordHashSet> availableFields = objects.classes();
|
|
|
|
|
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// Read vol fields and subset
|
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~
|
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|
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PtrList<volScalarField> vScalarFlds;
|
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subsetFields(subsetter, availableFields, vScalarFlds);
|
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|
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PtrList<volVectorField> vVectorFlds;
|
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subsetFields(subsetter, availableFields, vVectorFlds);
|
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|
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PtrList<volSphericalTensorField> vSphTensorFlds;
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subsetFields(subsetter, availableFields, vSphTensorFlds);
|
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|
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PtrList<volSymmTensorField> vSymmTensorFlds;
|
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subsetFields(subsetter, availableFields, vSymmTensorFlds);
|
|
|
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PtrList<volTensorField> vTensorFlds;
|
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subsetFields(subsetter, availableFields, vTensorFlds);
|
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|
|
|
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// Read surface fields and subset
|
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
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PtrList<surfaceScalarField> sScalarFlds;
|
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subsetFields(subsetter, availableFields, sScalarFlds);
|
|
|
|
PtrList<surfaceVectorField> sVectorFlds;
|
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subsetFields(subsetter, availableFields, sVectorFlds);
|
|
|
|
PtrList<surfaceSphericalTensorField> sSphTensorFlds;
|
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subsetFields(subsetter, availableFields, sSphTensorFlds);
|
|
|
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PtrList<surfaceSymmTensorField> sSymmTensorFlds;
|
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subsetFields(subsetter, availableFields, sSymmTensorFlds);
|
|
|
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PtrList<surfaceTensorField> sTensorFlds;
|
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subsetFields(subsetter, availableFields, sTensorFlds);
|
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|
|
|
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// Read point fields and subset
|
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
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|
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const pointMesh& pMesh = pointMesh::New(mesh);
|
|
|
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PtrList<pointScalarField> pScalarFlds;
|
|
subsetPointFields(subsetter, pMesh, availableFields, pScalarFlds);
|
|
|
|
PtrList<pointVectorField> pVectorFlds;
|
|
subsetPointFields(subsetter, pMesh, availableFields, pVectorFlds);
|
|
|
|
PtrList<pointSphericalTensorField> pSphTensorFlds;
|
|
subsetPointFields(subsetter, pMesh, availableFields, pSphTensorFlds);
|
|
|
|
PtrList<pointSymmTensorField> pSymmTensorFlds;
|
|
subsetPointFields(subsetter, pMesh, availableFields, pSymmTensorFlds);
|
|
|
|
PtrList<pointTensorField> pTensorFlds;
|
|
subsetPointFields(subsetter, pMesh, availableFields, pTensorFlds);
|
|
|
|
|
|
// Read dimensioned fields and subset
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
PtrList<volScalarField::Internal> dScalarFlds;
|
|
subsetDimensionedFields(subsetter, availableFields, dScalarFlds);
|
|
|
|
PtrList<volVectorField::Internal> dVectorFlds;
|
|
subsetDimensionedFields(subsetter, availableFields, dVectorFlds);
|
|
|
|
PtrList<volSphericalTensorField::Internal> dSphTensorFlds;
|
|
subsetDimensionedFields(subsetter, availableFields, dSphTensorFlds);
|
|
|
|
PtrList<volSymmTensorField::Internal> dSymmTensorFlds;
|
|
subsetDimensionedFields(subsetter, availableFields, dSymmTensorFlds);
|
|
|
|
PtrList<volTensorField::Internal> dTensorFlds;
|
|
subsetDimensionedFields(subsetter, availableFields, dTensorFlds);
|
|
|
|
|
|
// Read topoSets and subset
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
PtrList<cellSet> cellSets;
|
|
PtrList<faceSet> faceSets;
|
|
PtrList<pointSet> pointSets;
|
|
|
|
{
|
|
IOobjectList objects(mesh, mesh.facesInstance(), "polyMesh/sets");
|
|
if (cellSetPtr)
|
|
{
|
|
objects.remove(*cellSetPtr);
|
|
}
|
|
subsetTopoSets
|
|
(
|
|
mesh,
|
|
objects,
|
|
subsetter.cellMap(),
|
|
subsetter.subMesh(),
|
|
cellSets
|
|
);
|
|
subsetTopoSets
|
|
(
|
|
mesh,
|
|
objects,
|
|
subsetter.faceMap(),
|
|
subsetter.subMesh(),
|
|
faceSets
|
|
);
|
|
subsetTopoSets
|
|
(
|
|
mesh,
|
|
objects,
|
|
subsetter.pointMap(),
|
|
subsetter.subMesh(),
|
|
pointSets
|
|
);
|
|
}
|
|
|
|
|
|
// Write mesh and fields to new time
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
if (overwrite || specifiedInstance)
|
|
{
|
|
runTime.setTime(instant(fieldsInstance), 0);
|
|
subsetter.subMesh().setInstance(meshInstance);
|
|
topoSet::setInstance(meshInstance, cellSets);
|
|
topoSet::setInstance(meshInstance, faceSets);
|
|
topoSet::setInstance(meshInstance, pointSets);
|
|
}
|
|
else
|
|
{
|
|
++runTime;
|
|
subsetter.subMesh().setInstance(runTime.timeName());
|
|
}
|
|
|
|
Info<< "Writing subsetted mesh and fields to time " << runTime.timeName()
|
|
<< endl;
|
|
subsetter.subMesh().write();
|
|
processorMeshes::removeFiles(subsetter.subMesh());
|
|
|
|
|
|
// Volume fields
|
|
for (const auto& fld : vScalarFlds) { fld.write(); }
|
|
for (const auto& fld : vVectorFlds) { fld.write(); }
|
|
for (const auto& fld : vSphTensorFlds) { fld.write(); }
|
|
for (const auto& fld : vSymmTensorFlds) { fld.write(); }
|
|
for (const auto& fld : vTensorFlds) { fld.write(); }
|
|
|
|
// Surface fields
|
|
for (const auto& fld : sScalarFlds) { fld.write(); }
|
|
for (const auto& fld : sVectorFlds) { fld.write(); }
|
|
for (const auto& fld : sSphTensorFlds) { fld.write(); }
|
|
for (const auto& fld : sSymmTensorFlds) { fld.write(); }
|
|
for (const auto& fld : sTensorFlds) { fld.write(); }
|
|
|
|
// Point fields
|
|
for (const auto& fld : pScalarFlds) { fld.write(); }
|
|
for (const auto& fld : pVectorFlds) { fld.write(); }
|
|
for (const auto& fld : pSphTensorFlds) { fld.write(); }
|
|
for (const auto& fld : pSymmTensorFlds) { fld.write(); }
|
|
for (const auto& fld : pTensorFlds) { fld.write(); }
|
|
|
|
// Dimensioned fields
|
|
for (const auto& fld : dScalarFlds) { fld.write(); }
|
|
for (const auto& fld : dVectorFlds) { fld.write(); }
|
|
for (const auto& fld : dSphTensorFlds) { fld.write(); }
|
|
for (const auto& fld : dSymmTensorFlds) { fld.write(); }
|
|
for (const auto& fld : dTensorFlds) { fld.write(); }
|
|
|
|
Info<< "\nEnd\n" << endl;
|
|
|
|
return 0;
|
|
}
|
|
|
|
|
|
// ************************************************************************* //
|