6b6b36afd3
- improves backward compatibility and more naming consistency. Retain setMany(iter1, iter2) to avoid ambiguity with the PackedList::set(index, value) method.
1432 lines
52 KiB
C
1432 lines
52 KiB
C
/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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\\ / O peration |
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\\ / A nd | Copyright (C) 2011-2017 OpenFOAM Foundation
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\\/ M anipulation | Copyright (C) 2016-2017 OpenCFD Ltd.
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-------------------------------------------------------------------------------
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License
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This file is part of OpenFOAM.
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OpenFOAM is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
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ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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for more details.
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You should have received a copy of the GNU General Public License
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along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
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Application
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decomposePar
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Group
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grpParallelUtilities
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Description
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Automatically decomposes a mesh and fields of a case for parallel
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execution of OpenFOAM.
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Usage
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\b decomposePar [OPTION]
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Options:
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- \par -cellDist
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Write the cell distribution as a labelList, for use with 'manual'
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decomposition method or as a volScalarField for post-processing.
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- \par -region \<regionName\>
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Decompose named region. Does not check for existence of processor*.
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- \par -allRegions
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Decompose all regions in regionProperties. Does not check for
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existence of processor*.
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- \par -copyZero
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Copy \a 0 directory to processor* rather than decompose the fields.
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- \par -copyUniform
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Copy any \a uniform directories too.
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- \par -constant
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- \par -time xxx:yyy
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Override controlDict settings and decompose selected times. Does not
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re-decompose the mesh i.e. does not handle moving mesh or changing
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mesh cases.
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- \par -fields
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Use existing geometry decomposition and convert fields only.
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- \par -noSets
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Skip decomposing cellSets, faceSets, pointSets.
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- \par -force
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Remove any existing \a processor subdirectories before decomposing the
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geometry.
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- \par -ifRequired
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Only decompose the geometry if the number of domains has changed from a
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previous decomposition. No \a processor subdirectories will be removed
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unless the \a -force option is also specified. This option can be used
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to avoid redundant geometry decomposition (eg, in scripts), but should
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be used with caution when the underlying (serial) geometry or the
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decomposition method etc. have been changed between decompositions.
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\*---------------------------------------------------------------------------*/
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#include "OSspecific.H"
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#include "fvCFD.H"
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#include "IOobjectList.H"
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#include "domainDecomposition.H"
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#include "labelIOField.H"
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#include "labelFieldIOField.H"
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#include "scalarIOField.H"
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#include "scalarFieldIOField.H"
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#include "vectorIOField.H"
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#include "vectorFieldIOField.H"
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#include "sphericalTensorIOField.H"
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#include "sphericalTensorFieldIOField.H"
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#include "symmTensorIOField.H"
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#include "symmTensorFieldIOField.H"
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#include "tensorIOField.H"
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#include "tensorFieldIOField.H"
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#include "pointFields.H"
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#include "regionProperties.H"
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#include "readFields.H"
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#include "dimFieldDecomposer.H"
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#include "fvFieldDecomposer.H"
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#include "pointFieldDecomposer.H"
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#include "lagrangianFieldDecomposer.H"
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#include "decompositionModel.H"
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#include "collatedFileOperation.H"
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#include "faCFD.H"
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#include "emptyFaPatch.H"
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#include "faMeshDecomposition.H"
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#include "faFieldDecomposer.H"
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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namespace Foam
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{
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const labelIOList& procAddressing
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(
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const PtrList<fvMesh>& procMeshList,
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const label proci,
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const word& name,
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PtrList<labelIOList>& procAddressingList
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)
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{
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const fvMesh& procMesh = procMeshList[proci];
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if (!procAddressingList.set(proci))
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{
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procAddressingList.set
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(
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proci,
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new labelIOList
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(
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IOobject
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(
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name,
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procMesh.facesInstance(),
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procMesh.meshSubDir,
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procMesh,
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IOobject::MUST_READ,
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IOobject::NO_WRITE,
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false
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)
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)
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);
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}
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return procAddressingList[proci];
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}
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void decomposeUniform
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(
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const bool copyUniform,
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const domainDecomposition& mesh,
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const Time& processorDb,
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const word& regionDir = word::null
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)
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{
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const Time& runTime = mesh.time();
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// Any uniform data to copy/link?
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const fileName uniformDir(regionDir/"uniform");
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if (fileHandler().isDir(runTime.timePath()/uniformDir))
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{
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Info<< "Detected additional non-decomposed files in "
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<< runTime.timePath()/uniformDir
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<< endl;
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const fileName timePath =
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fileHandler().filePath(processorDb.timePath());
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// If no fields have been decomposed the destination
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// directory will not have been created so make sure.
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mkDir(timePath);
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if (copyUniform || mesh.distributed())
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{
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if (!fileHandler().exists(timePath/uniformDir))
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{
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fileHandler().cp
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(
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runTime.timePath()/uniformDir,
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timePath/uniformDir
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);
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}
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}
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else
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{
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// Link with relative paths
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string parentPath = string("..")/"..";
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if (regionDir != word::null)
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{
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parentPath = parentPath/"..";
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}
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fileName currentDir(cwd());
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chDir(timePath);
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if (!fileHandler().exists(uniformDir))
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{
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fileHandler().ln
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(
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parentPath/runTime.timeName()/uniformDir,
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uniformDir
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);
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}
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chDir(currentDir);
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}
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}
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}
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}
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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int main(int argc, char *argv[])
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{
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argList::addNote
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(
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"decompose a mesh and fields of a case for parallel execution"
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);
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argList::noParallel();
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argList::addOption
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(
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"decomposeParDict",
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"file",
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"read decomposePar dictionary from specified location"
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);
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#include "addRegionOption.H"
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argList::addBoolOption
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(
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"allRegions",
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"operate on all regions in regionProperties"
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);
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argList::addBoolOption
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(
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"cellDist",
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"write cell distribution as a labelList - for use with 'manual' "
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"decomposition method or as a volScalarField for post-processing."
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);
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argList::addBoolOption
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(
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"copyZero",
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"Copy \a 0 directory to processor* rather than decompose the fields"
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);
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argList::addBoolOption
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(
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"copyUniform",
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"copy any uniform/ directories too"
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);
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argList::addBoolOption
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(
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"fields",
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"use existing geometry decomposition and convert fields only"
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);
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argList::addBoolOption
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(
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"noSets",
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"skip decomposing cellSets, faceSets, pointSets"
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);
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argList::addBoolOption
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(
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"force",
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"remove existing processor*/ subdirs before decomposing the geometry"
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);
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argList::addBoolOption
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(
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"ifRequired",
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"only decompose geometry if the number of domains has changed"
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);
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// Include explicit constant options, have zero from time range
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timeSelector::addOptions(true, false);
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#include "setRootCase.H"
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const bool optRegion = args.found("region");
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const bool allRegions = args.found("allRegions");
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const bool writeCellDist = args.found("cellDist");
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const bool copyZero = args.found("copyZero");
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const bool copyUniform = args.found("copyUniform");
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const bool decomposeSets = !args.found("noSets");
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const bool ifRequiredDecomposition = args.found("ifRequired");
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bool decomposeFieldsOnly = args.found("fields");
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bool forceOverwrite = args.found("force");
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// Set time from database
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#include "createTime.H"
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// Allow override of time
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instantList times = timeSelector::selectIfPresent(runTime, args);
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// Allow override of decomposeParDict location
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fileName decompDictFile;
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args.readIfPresent("decomposeParDict", decompDictFile);
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wordList regionNames;
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if (allRegions)
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{
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Info<< "Decomposing all regions in regionProperties" << nl << endl;
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regionProperties rp(runTime);
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wordHashSet names;
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forAllConstIters(rp, iter)
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{
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names.insert(iter.object());
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}
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regionNames = names.sortedToc();
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}
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else
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{
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regionNames = {fvMesh::defaultRegion};
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args.readIfPresent("region", regionNames[0]);
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}
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forAll(regionNames, regioni)
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{
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const word& regionName = regionNames[regioni];
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const word& regionDir =
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regionName == fvMesh::defaultRegion ? word::null : regionName;
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Info<< "\n\nDecomposing mesh " << regionName << nl << endl;
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// Determine the existing processor count directly
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label nProcs = fileHandler().nProcs(runTime.path(), regionDir);
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// Get requested numberOfSubdomains directly from the dictionary.
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// Note: have no mesh yet so cannot use decompositionModel::New
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const label nDomains = decompositionMethod::nDomains
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(
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IOdictionary
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(
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decompositionModel::selectIO
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(
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IOobject
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(
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"decomposeParDict",
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runTime.time().system(),
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regionDir, // use region if non-standard
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runTime,
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IOobject::MUST_READ,
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IOobject::NO_WRITE,
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false
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),
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decompDictFile
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)
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)
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);
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if (decomposeFieldsOnly)
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{
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// Sanity check on previously decomposed case
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if (nProcs != nDomains)
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{
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FatalErrorInFunction
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<< "Specified -fields, but the case was decomposed with "
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<< nProcs << " domains"
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<< nl
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<< "instead of " << nDomains
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<< " domains as specified in decomposeParDict" << nl
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<< exit(FatalError);
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}
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}
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else if (nProcs)
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{
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bool procDirsProblem = true;
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if (ifRequiredDecomposition && nProcs == nDomains)
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{
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// we can reuse the decomposition
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decomposeFieldsOnly = true;
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procDirsProblem = false;
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forceOverwrite = false;
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Info<< "Using existing processor directories" << nl;
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}
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if (allRegions || optRegion)
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{
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procDirsProblem = false;
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forceOverwrite = false;
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}
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if (forceOverwrite)
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{
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Info<< "Removing " << nProcs
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<< " existing processor directories" << endl;
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fileHandler().rmDir
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(
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runTime.path()/word("processors"),
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true // silent (may not have been collated)
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);
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// remove existing processor dirs
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// reverse order to avoid gaps if someone interrupts the process
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for (label proci = nProcs-1; proci >= 0; --proci)
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{
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fileName procDir
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(
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runTime.path()/(word("processor") + name(proci))
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);
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fileHandler().rmDir(procDir);
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}
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procDirsProblem = false;
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}
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if (procDirsProblem)
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{
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FatalErrorInFunction
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<< "Case is already decomposed with " << nProcs
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<< " domains, use the -force option or manually" << nl
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<< "remove processor directories before decomposing. e.g.,"
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<< nl
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<< " rm -rf " << runTime.path().c_str() << "/processor*"
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<< nl
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<< exit(FatalError);
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}
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}
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Info<< "Create mesh" << endl;
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domainDecomposition mesh
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(
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IOobject
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(
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regionName,
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runTime.timeName(),
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runTime,
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IOobject::NO_READ,
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IOobject::NO_WRITE,
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false
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),
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decompDictFile
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);
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// Decompose the mesh
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if (!decomposeFieldsOnly)
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{
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// Disable buffering when writing mesh since we need to read
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// it later on when decomposing the fields
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float bufSz =
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fileOperations::collatedFileOperation::maxThreadFileBufferSize;
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fileOperations::collatedFileOperation::maxThreadFileBufferSize = 0;
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mesh.decomposeMesh();
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mesh.writeDecomposition(decomposeSets);
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if (writeCellDist)
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{
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const labelList& procIds = mesh.cellToProc();
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|
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// Write the decomposition as labelList for use with 'manual'
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// decomposition method.
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labelIOList cellDecomposition
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(
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IOobject
|
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(
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"cellDecomposition",
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mesh.facesInstance(),
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mesh,
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IOobject::NO_READ,
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IOobject::NO_WRITE,
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false
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),
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procIds
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);
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cellDecomposition.write();
|
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|
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Info<< nl << "Wrote decomposition to "
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<< cellDecomposition.objectPath()
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<< " for use in manual decomposition." << endl;
|
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|
|
// Write as volScalarField for postprocessing.
|
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volScalarField cellDist
|
|
(
|
|
IOobject
|
|
(
|
|
"cellDist",
|
|
runTime.timeName(),
|
|
mesh,
|
|
IOobject::NO_READ,
|
|
IOobject::AUTO_WRITE
|
|
),
|
|
mesh,
|
|
dimensionedScalar("cellDist", dimless, -1),
|
|
zeroGradientFvPatchScalarField::typeName
|
|
);
|
|
|
|
forAll(procIds, celli)
|
|
{
|
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cellDist[celli] = procIds[celli];
|
|
}
|
|
|
|
cellDist.correctBoundaryConditions();
|
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cellDist.write();
|
|
|
|
Info<< nl << "Wrote decomposition as volScalarField to "
|
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<< cellDist.name() << " for use in postprocessing."
|
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<< endl;
|
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}
|
|
|
|
fileOperations::collatedFileOperation::maxThreadFileBufferSize =
|
|
bufSz;
|
|
}
|
|
|
|
|
|
if (copyZero)
|
|
{
|
|
// Copy the 0 directory into each of the processor directories
|
|
fileName prevTimePath;
|
|
for (label proci = 0; proci < mesh.nProcs(); ++proci)
|
|
{
|
|
Time processorDb
|
|
(
|
|
Time::controlDictName,
|
|
args.rootPath(),
|
|
args.caseName()/fileName(word("processor") + name(proci))
|
|
);
|
|
processorDb.setTime(runTime);
|
|
|
|
if (fileHandler().isDir(runTime.timePath()))
|
|
{
|
|
// Get corresponding directory name (to handle processors/)
|
|
const fileName timePath
|
|
(
|
|
fileHandler().objectPath
|
|
(
|
|
IOobject
|
|
(
|
|
"",
|
|
processorDb.timeName(),
|
|
processorDb
|
|
),
|
|
word::null
|
|
)
|
|
);
|
|
|
|
if (timePath != prevTimePath)
|
|
{
|
|
Info<< "Processor " << proci
|
|
<< ": copying " << runTime.timePath() << nl
|
|
<< " to " << timePath << endl;
|
|
fileHandler().cp(runTime.timePath(), timePath);
|
|
|
|
prevTimePath = timePath;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
else
|
|
{
|
|
// Decompose the field files
|
|
|
|
// Cached processor meshes and maps. These are only preserved if
|
|
// running with multiple times.
|
|
PtrList<Time> processorDbList(mesh.nProcs());
|
|
PtrList<fvMesh> procMeshList(mesh.nProcs());
|
|
PtrList<labelIOList> faceProcAddressingList(mesh.nProcs());
|
|
PtrList<labelIOList> cellProcAddressingList(mesh.nProcs());
|
|
PtrList<labelIOList> boundaryProcAddressingList(mesh.nProcs());
|
|
PtrList<fvFieldDecomposer> fieldDecomposerList(mesh.nProcs());
|
|
PtrList<dimFieldDecomposer> dimFieldDecomposerList(mesh.nProcs());
|
|
PtrList<labelIOList> pointProcAddressingList(mesh.nProcs());
|
|
PtrList<pointFieldDecomposer> pointFieldDecomposerList
|
|
(
|
|
mesh.nProcs()
|
|
);
|
|
|
|
|
|
// Loop over all times
|
|
forAll(times, timeI)
|
|
{
|
|
runTime.setTime(times[timeI], timeI);
|
|
|
|
Info<< "Time = " << runTime.timeName() << endl;
|
|
|
|
// Search for list of objects for this time
|
|
IOobjectList objects(mesh, runTime.timeName());
|
|
|
|
|
|
// Construct the vol fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~
|
|
PtrList<volScalarField> volScalarFields;
|
|
readFields(mesh, objects, volScalarFields, false);
|
|
PtrList<volVectorField> volVectorFields;
|
|
readFields(mesh, objects, volVectorFields, false);
|
|
PtrList<volSphericalTensorField> volSphericalTensorFields;
|
|
readFields(mesh, objects, volSphericalTensorFields, false);
|
|
PtrList<volSymmTensorField> volSymmTensorFields;
|
|
readFields(mesh, objects, volSymmTensorFields, false);
|
|
PtrList<volTensorField> volTensorFields;
|
|
readFields(mesh, objects, volTensorFields, false);
|
|
|
|
|
|
// Construct the dimensioned fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
PtrList<DimensionedField<scalar, volMesh>> dimScalarFields;
|
|
readFields(mesh, objects, dimScalarFields);
|
|
PtrList<DimensionedField<vector, volMesh>> dimVectorFields;
|
|
readFields(mesh, objects, dimVectorFields);
|
|
PtrList<DimensionedField<sphericalTensor, volMesh>>
|
|
dimSphericalTensorFields;
|
|
readFields(mesh, objects, dimSphericalTensorFields);
|
|
PtrList<DimensionedField<symmTensor, volMesh>>
|
|
dimSymmTensorFields;
|
|
readFields(mesh, objects, dimSymmTensorFields);
|
|
PtrList<DimensionedField<tensor, volMesh>> dimTensorFields;
|
|
readFields(mesh, objects, dimTensorFields);
|
|
|
|
|
|
// Construct the surface fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
PtrList<surfaceScalarField> surfaceScalarFields;
|
|
readFields(mesh, objects, surfaceScalarFields, false);
|
|
PtrList<surfaceVectorField> surfaceVectorFields;
|
|
readFields(mesh, objects, surfaceVectorFields, false);
|
|
PtrList<surfaceSphericalTensorField>
|
|
surfaceSphericalTensorFields;
|
|
readFields(mesh, objects, surfaceSphericalTensorFields, false);
|
|
PtrList<surfaceSymmTensorField> surfaceSymmTensorFields;
|
|
readFields(mesh, objects, surfaceSymmTensorFields, false);
|
|
PtrList<surfaceTensorField> surfaceTensorFields;
|
|
readFields(mesh, objects, surfaceTensorFields, false);
|
|
|
|
|
|
// Construct the point fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
const pointMesh& pMesh = pointMesh::New(mesh);
|
|
|
|
PtrList<pointScalarField> pointScalarFields;
|
|
readFields(pMesh, objects, pointScalarFields, false);
|
|
PtrList<pointVectorField> pointVectorFields;
|
|
readFields(pMesh, objects, pointVectorFields, false);
|
|
PtrList<pointSphericalTensorField> pointSphericalTensorFields;
|
|
readFields(pMesh, objects, pointSphericalTensorFields, false);
|
|
PtrList<pointSymmTensorField> pointSymmTensorFields;
|
|
readFields(pMesh, objects, pointSymmTensorFields, false);
|
|
PtrList<pointTensorField> pointTensorFields;
|
|
readFields(pMesh, objects, pointTensorFields, false);
|
|
|
|
|
|
// Construct the Lagrangian fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
fileNameList cloudDirs
|
|
(
|
|
fileHandler().readDir
|
|
(
|
|
runTime.timePath()/cloud::prefix,
|
|
fileName::DIRECTORY
|
|
)
|
|
);
|
|
|
|
// Particles
|
|
PtrList<Cloud<indexedParticle>> lagrangianPositions
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
// Particles per cell
|
|
PtrList<List<SLList<indexedParticle*>*>> cellParticles
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
|
|
PtrList<PtrList<labelIOField>> lagrangianLabelFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<labelFieldCompactIOField>>
|
|
lagrangianLabelFieldFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<scalarIOField>> lagrangianScalarFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<scalarFieldCompactIOField>>
|
|
lagrangianScalarFieldFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<vectorIOField>> lagrangianVectorFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<vectorFieldCompactIOField>>
|
|
lagrangianVectorFieldFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<sphericalTensorIOField>>
|
|
lagrangianSphericalTensorFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<sphericalTensorFieldCompactIOField>>
|
|
lagrangianSphericalTensorFieldFields(cloudDirs.size());
|
|
PtrList<PtrList<symmTensorIOField>> lagrangianSymmTensorFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<symmTensorFieldCompactIOField>>
|
|
lagrangianSymmTensorFieldFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<tensorIOField>> lagrangianTensorFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
PtrList<PtrList<tensorFieldCompactIOField>>
|
|
lagrangianTensorFieldFields
|
|
(
|
|
cloudDirs.size()
|
|
);
|
|
|
|
label cloudI = 0;
|
|
|
|
for (const fileName& cloudDir : cloudDirs)
|
|
{
|
|
IOobjectList sprayObjs
|
|
(
|
|
mesh,
|
|
runTime.timeName(),
|
|
cloud::prefix/cloudDir,
|
|
IOobject::MUST_READ,
|
|
IOobject::NO_WRITE,
|
|
false
|
|
);
|
|
|
|
// Note: looking up "positions" for backwards compatibility
|
|
IOobject* positionsPtr =
|
|
sprayObjs.lookup(word("positions"));
|
|
IOobject* coordsPtr = sprayObjs.lookup(word("coordinates"));
|
|
|
|
if (positionsPtr || coordsPtr)
|
|
{
|
|
// Read lagrangian particles
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
Info<< "Identified lagrangian data set: "
|
|
<< cloudDir << endl;
|
|
|
|
lagrangianPositions.set
|
|
(
|
|
cloudI,
|
|
new Cloud<indexedParticle>
|
|
(
|
|
mesh,
|
|
cloudDir,
|
|
false
|
|
)
|
|
);
|
|
|
|
|
|
// Sort particles per cell
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
cellParticles.set
|
|
(
|
|
cloudI,
|
|
new List<SLList<indexedParticle*>*>
|
|
(
|
|
mesh.nCells(),
|
|
static_cast<SLList<indexedParticle*>*>(nullptr)
|
|
)
|
|
);
|
|
|
|
label i = 0;
|
|
|
|
forAllIter
|
|
(
|
|
Cloud<indexedParticle>,
|
|
lagrangianPositions[cloudI],
|
|
iter
|
|
)
|
|
{
|
|
iter().index() = i++;
|
|
|
|
label celli = iter().cell();
|
|
|
|
// Check
|
|
if (celli < 0 || celli >= mesh.nCells())
|
|
{
|
|
FatalErrorInFunction
|
|
<< "Illegal cell number " << celli
|
|
<< " for particle with index "
|
|
<< iter().index()
|
|
<< " at position "
|
|
<< iter().position() << nl
|
|
<< "Cell number should be between 0 and "
|
|
<< mesh.nCells()-1 << nl
|
|
<< "On this mesh the particle should"
|
|
<< " be in cell "
|
|
<< mesh.findCell(iter().position())
|
|
<< exit(FatalError);
|
|
}
|
|
|
|
if (!cellParticles[cloudI][celli])
|
|
{
|
|
cellParticles[cloudI][celli] =
|
|
new SLList<indexedParticle*>();
|
|
}
|
|
|
|
cellParticles[cloudI][celli]->append(&iter());
|
|
}
|
|
|
|
// Read fields
|
|
// ~~~~~~~~~~~
|
|
|
|
IOobjectList lagrangianObjects
|
|
(
|
|
mesh,
|
|
runTime.timeName(),
|
|
cloud::prefix/cloudDirs[cloudI],
|
|
IOobject::MUST_READ,
|
|
IOobject::NO_WRITE,
|
|
false
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianLabelFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianLabelFieldFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianScalarFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianScalarFieldFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianVectorFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianVectorFieldFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianSphericalTensorFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianSphericalTensorFieldFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianSymmTensorFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianSymmTensorFieldFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianTensorFields
|
|
);
|
|
|
|
lagrangianFieldDecomposer::readFieldFields
|
|
(
|
|
cloudI,
|
|
lagrangianObjects,
|
|
lagrangianTensorFieldFields
|
|
);
|
|
|
|
cloudI++;
|
|
}
|
|
}
|
|
|
|
lagrangianPositions.setSize(cloudI);
|
|
cellParticles.setSize(cloudI);
|
|
lagrangianLabelFields.setSize(cloudI);
|
|
lagrangianLabelFieldFields.setSize(cloudI);
|
|
lagrangianScalarFields.setSize(cloudI);
|
|
lagrangianScalarFieldFields.setSize(cloudI);
|
|
lagrangianVectorFields.setSize(cloudI);
|
|
lagrangianVectorFieldFields.setSize(cloudI);
|
|
lagrangianSphericalTensorFields.setSize(cloudI);
|
|
lagrangianSphericalTensorFieldFields.setSize(cloudI);
|
|
lagrangianSymmTensorFields.setSize(cloudI);
|
|
lagrangianSymmTensorFieldFields.setSize(cloudI);
|
|
lagrangianTensorFields.setSize(cloudI);
|
|
lagrangianTensorFieldFields.setSize(cloudI);
|
|
|
|
Info<< endl;
|
|
|
|
// split the fields over processors
|
|
for (label proci = 0; proci < mesh.nProcs(); ++proci)
|
|
{
|
|
Info<< "Processor " << proci << ": field transfer" << endl;
|
|
|
|
|
|
// open the database
|
|
if (!processorDbList.set(proci))
|
|
{
|
|
processorDbList.set
|
|
(
|
|
proci,
|
|
new Time
|
|
(
|
|
Time::controlDictName,
|
|
args.rootPath(),
|
|
args.caseName()
|
|
/fileName(word("processor") + name(proci))
|
|
)
|
|
);
|
|
}
|
|
Time& processorDb = processorDbList[proci];
|
|
|
|
|
|
processorDb.setTime(runTime);
|
|
|
|
// read the mesh
|
|
if (!procMeshList.set(proci))
|
|
{
|
|
procMeshList.set
|
|
(
|
|
proci,
|
|
new fvMesh
|
|
(
|
|
IOobject
|
|
(
|
|
regionName,
|
|
processorDb.timeName(),
|
|
processorDb
|
|
)
|
|
)
|
|
);
|
|
}
|
|
const fvMesh& procMesh = procMeshList[proci];
|
|
|
|
const labelIOList& faceProcAddressing = procAddressing
|
|
(
|
|
procMeshList,
|
|
proci,
|
|
"faceProcAddressing",
|
|
faceProcAddressingList
|
|
);
|
|
|
|
const labelIOList& cellProcAddressing = procAddressing
|
|
(
|
|
procMeshList,
|
|
proci,
|
|
"cellProcAddressing",
|
|
cellProcAddressingList
|
|
);
|
|
|
|
const labelIOList& boundaryProcAddressing = procAddressing
|
|
(
|
|
procMeshList,
|
|
proci,
|
|
"boundaryProcAddressing",
|
|
boundaryProcAddressingList
|
|
);
|
|
|
|
|
|
// FV fields
|
|
{
|
|
if (!fieldDecomposerList.set(proci))
|
|
{
|
|
fieldDecomposerList.set
|
|
(
|
|
proci,
|
|
new fvFieldDecomposer
|
|
(
|
|
mesh,
|
|
procMesh,
|
|
faceProcAddressing,
|
|
cellProcAddressing,
|
|
boundaryProcAddressing
|
|
)
|
|
);
|
|
}
|
|
const fvFieldDecomposer& fieldDecomposer =
|
|
fieldDecomposerList[proci];
|
|
|
|
fieldDecomposer.decomposeFields(volScalarFields);
|
|
fieldDecomposer.decomposeFields(volVectorFields);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
volSphericalTensorFields
|
|
);
|
|
fieldDecomposer.decomposeFields(volSymmTensorFields);
|
|
fieldDecomposer.decomposeFields(volTensorFields);
|
|
|
|
fieldDecomposer.decomposeFields(surfaceScalarFields);
|
|
fieldDecomposer.decomposeFields(surfaceVectorFields);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
surfaceSphericalTensorFields
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
surfaceSymmTensorFields
|
|
);
|
|
fieldDecomposer.decomposeFields(surfaceTensorFields);
|
|
|
|
if (times.size() == 1)
|
|
{
|
|
// Clear cached decomposer
|
|
fieldDecomposerList.set(proci, nullptr);
|
|
}
|
|
}
|
|
|
|
// Dimensioned fields
|
|
{
|
|
if (!dimFieldDecomposerList.set(proci))
|
|
{
|
|
dimFieldDecomposerList.set
|
|
(
|
|
proci,
|
|
new dimFieldDecomposer
|
|
(
|
|
mesh,
|
|
procMesh,
|
|
faceProcAddressing,
|
|
cellProcAddressing
|
|
)
|
|
);
|
|
}
|
|
const dimFieldDecomposer& dimDecomposer =
|
|
dimFieldDecomposerList[proci];
|
|
|
|
dimDecomposer.decomposeFields(dimScalarFields);
|
|
dimDecomposer.decomposeFields(dimVectorFields);
|
|
dimDecomposer.decomposeFields(dimSphericalTensorFields);
|
|
dimDecomposer.decomposeFields(dimSymmTensorFields);
|
|
dimDecomposer.decomposeFields(dimTensorFields);
|
|
|
|
if (times.size() == 1)
|
|
{
|
|
dimFieldDecomposerList.set(proci, nullptr);
|
|
}
|
|
}
|
|
|
|
|
|
// Point fields
|
|
if
|
|
(
|
|
pointScalarFields.size()
|
|
|| pointVectorFields.size()
|
|
|| pointSphericalTensorFields.size()
|
|
|| pointSymmTensorFields.size()
|
|
|| pointTensorFields.size()
|
|
)
|
|
{
|
|
const labelIOList& pointProcAddressing = procAddressing
|
|
(
|
|
procMeshList,
|
|
proci,
|
|
"pointProcAddressing",
|
|
pointProcAddressingList
|
|
);
|
|
|
|
const pointMesh& procPMesh = pointMesh::New(procMesh);
|
|
|
|
if (!pointFieldDecomposerList.set(proci))
|
|
{
|
|
pointFieldDecomposerList.set
|
|
(
|
|
proci,
|
|
new pointFieldDecomposer
|
|
(
|
|
pMesh,
|
|
procPMesh,
|
|
pointProcAddressing,
|
|
boundaryProcAddressing
|
|
)
|
|
);
|
|
}
|
|
const pointFieldDecomposer& pointDecomposer =
|
|
pointFieldDecomposerList[proci];
|
|
|
|
pointDecomposer.decomposeFields(pointScalarFields);
|
|
pointDecomposer.decomposeFields(pointVectorFields);
|
|
pointDecomposer.decomposeFields
|
|
(
|
|
pointSphericalTensorFields
|
|
);
|
|
pointDecomposer.decomposeFields(pointSymmTensorFields);
|
|
pointDecomposer.decomposeFields(pointTensorFields);
|
|
|
|
|
|
if (times.size() == 1)
|
|
{
|
|
pointProcAddressingList.set(proci, nullptr);
|
|
pointFieldDecomposerList.set(proci, nullptr);
|
|
}
|
|
}
|
|
|
|
|
|
// If there is lagrangian data write it out
|
|
forAll(lagrangianPositions, cloudI)
|
|
{
|
|
if (lagrangianPositions[cloudI].size())
|
|
{
|
|
lagrangianFieldDecomposer fieldDecomposer
|
|
(
|
|
mesh,
|
|
procMesh,
|
|
faceProcAddressing,
|
|
cellProcAddressing,
|
|
cloudDirs[cloudI],
|
|
lagrangianPositions[cloudI],
|
|
cellParticles[cloudI]
|
|
);
|
|
|
|
// Lagrangian fields
|
|
{
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianLabelFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianLabelFieldFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianScalarFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianScalarFieldFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianVectorFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianVectorFieldFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianSphericalTensorFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianSphericalTensorFieldFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianSymmTensorFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianSymmTensorFieldFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianTensorFields[cloudI]
|
|
);
|
|
fieldDecomposer.decomposeFieldFields
|
|
(
|
|
cloudDirs[cloudI],
|
|
lagrangianTensorFieldFields[cloudI]
|
|
);
|
|
}
|
|
}
|
|
}
|
|
|
|
// Decompose the "uniform" directory in the time region
|
|
// directory
|
|
decomposeUniform(copyUniform, mesh, processorDb, regionDir);
|
|
|
|
// For a multi-region case, also decompose the "uniform"
|
|
// directory in the time directory
|
|
if (regionNames.size() > 1 && regioni == 0)
|
|
{
|
|
decomposeUniform(copyUniform, mesh, processorDb);
|
|
}
|
|
|
|
// We have cached all the constant mesh data for the current
|
|
// processor. This is only important if running with
|
|
// multiple times, otherwise it is just extra storage.
|
|
if (times.size() == 1)
|
|
{
|
|
boundaryProcAddressingList.set(proci, nullptr);
|
|
cellProcAddressingList.set(proci, nullptr);
|
|
faceProcAddressingList.set(proci, nullptr);
|
|
procMeshList.set(proci, nullptr);
|
|
processorDbList.set(proci, nullptr);
|
|
}
|
|
}
|
|
|
|
// Finite area mesh and field decomposition
|
|
|
|
IOobject faMeshBoundaryIOobj
|
|
(
|
|
"faBoundary",
|
|
mesh.time().findInstance
|
|
(
|
|
mesh.dbDir()/polyMesh::meshSubDir,
|
|
"boundary"
|
|
),
|
|
faMesh::meshSubDir,
|
|
mesh,
|
|
IOobject::READ_IF_PRESENT,
|
|
IOobject::NO_WRITE
|
|
);
|
|
|
|
|
|
if (faMeshBoundaryIOobj.typeHeaderOk<faBoundaryMesh>(true))
|
|
{
|
|
Info << "\nFinite area mesh decomposition" << endl;
|
|
|
|
faMeshDecomposition aMesh(mesh);
|
|
|
|
aMesh.decomposeMesh();
|
|
|
|
aMesh.writeDecomposition();
|
|
|
|
|
|
// Construct the area fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~
|
|
PtrList<areaScalarField> areaScalarFields;
|
|
readFields(aMesh, objects, areaScalarFields);
|
|
|
|
PtrList<areaVectorField> areaVectorFields;
|
|
readFields(aMesh, objects, areaVectorFields);
|
|
|
|
PtrList<areaSphericalTensorField> areaSphericalTensorFields;
|
|
readFields(aMesh, objects, areaSphericalTensorFields);
|
|
|
|
PtrList<areaSymmTensorField> areaSymmTensorFields;
|
|
readFields(aMesh, objects, areaSymmTensorFields);
|
|
|
|
PtrList<areaTensorField> areaTensorFields;
|
|
readFields(aMesh, objects, areaTensorFields);
|
|
|
|
|
|
// Construct the edge fields
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
PtrList<edgeScalarField> edgeScalarFields;
|
|
readFields(aMesh, objects, edgeScalarFields);
|
|
|
|
Info << endl;
|
|
|
|
// Split the fields over processors
|
|
for (label procI = 0; procI < mesh.nProcs(); procI++)
|
|
{
|
|
Info<< "Processor " << procI
|
|
<< ": finite area field transfer" << endl;
|
|
|
|
// open the database
|
|
Time processorDb
|
|
(
|
|
Time::controlDictName,
|
|
args.rootPath(),
|
|
args.caseName()/
|
|
fileName(word("processor") + name(procI))
|
|
);
|
|
|
|
processorDb.setTime(runTime);
|
|
|
|
// Read the mesh
|
|
fvMesh procFvMesh
|
|
(
|
|
IOobject
|
|
(
|
|
regionName,
|
|
processorDb.timeName(),
|
|
processorDb
|
|
)
|
|
);
|
|
|
|
faMesh procMesh(procFvMesh);
|
|
|
|
// // Does not work. HJ, 15/Aug/2017
|
|
// const labelIOList& faceProcAddressing =
|
|
// procAddressing
|
|
// (
|
|
// procMeshList,
|
|
// procI,
|
|
// "faceProcAddressing",
|
|
// faceProcAddressingList
|
|
// );
|
|
|
|
// const labelIOList& boundaryProcAddressing =
|
|
// procAddressing
|
|
// (
|
|
// procMeshList,
|
|
// procI,
|
|
// "boundaryProcAddressing",
|
|
// boundaryProcAddressingList
|
|
// );
|
|
|
|
labelIOList faceProcAddressing
|
|
(
|
|
IOobject
|
|
(
|
|
"faceProcAddressing",
|
|
"constant",
|
|
procMesh.meshSubDir,
|
|
procFvMesh,
|
|
IOobject::MUST_READ,
|
|
IOobject::NO_WRITE
|
|
)
|
|
);
|
|
|
|
labelIOList boundaryProcAddressing
|
|
(
|
|
IOobject
|
|
(
|
|
"boundaryProcAddressing",
|
|
"constant",
|
|
procMesh.meshSubDir,
|
|
procFvMesh,
|
|
IOobject::MUST_READ,
|
|
IOobject::NO_WRITE
|
|
)
|
|
);
|
|
|
|
// FA fields
|
|
if
|
|
(
|
|
areaScalarFields.size()
|
|
|| areaVectorFields.size()
|
|
|| areaSphericalTensorFields.size()
|
|
|| areaSymmTensorFields.size()
|
|
|| areaTensorFields.size()
|
|
|| edgeScalarFields.size()
|
|
)
|
|
{
|
|
labelIOList edgeProcAddressing
|
|
(
|
|
IOobject
|
|
(
|
|
"edgeProcAddressing",
|
|
"constant",
|
|
procMesh.meshSubDir,
|
|
procFvMesh,
|
|
IOobject::MUST_READ,
|
|
IOobject::NO_WRITE
|
|
)
|
|
);
|
|
|
|
faFieldDecomposer fieldDecomposer
|
|
(
|
|
aMesh,
|
|
procMesh,
|
|
edgeProcAddressing,
|
|
faceProcAddressing,
|
|
boundaryProcAddressing
|
|
);
|
|
|
|
fieldDecomposer.decomposeFields(areaScalarFields);
|
|
fieldDecomposer.decomposeFields(areaVectorFields);
|
|
fieldDecomposer.decomposeFields(areaSphericalTensorFields);
|
|
fieldDecomposer.decomposeFields(areaSymmTensorFields);
|
|
fieldDecomposer.decomposeFields(areaTensorFields);
|
|
|
|
fieldDecomposer.decomposeFields(edgeScalarFields);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
Info<< "\nEnd\n" << endl;
|
|
|
|
return 0;
|
|
}
|
|
|
|
|
|
// ************************************************************************* //
|