5df2b96489
Non-const access to the internal field now obtained from a specifically
named access function consistent with the new names for non-canst access
to the boundary field boundaryFieldRef() and dimensioned internal field
dimensionedInternalFieldRef().
See also commit 22f4ad32b1
768 lines
21 KiB
C
768 lines
21 KiB
C
/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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\\ / O peration |
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\\ / A nd | Copyright (C) 2012-2016 OpenFOAM Foundation
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\\/ M anipulation |
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-------------------------------------------------------------------------------
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License
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This file is part of OpenFOAM.
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OpenFOAM is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
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ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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for more details.
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You should have received a copy of the GNU General Public License
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along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
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Application
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foamyHexMeshBackGroundMesh
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Description
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Writes out background mesh as constructed by foamyHexMesh and constructs
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distanceSurface.
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\*---------------------------------------------------------------------------*/
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#include "PatchTools.H"
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#include "argList.H"
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#include "Time.H"
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#include "triSurface.H"
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#include "searchableSurfaces.H"
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#include "conformationSurfaces.H"
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#include "cellShapeControl.H"
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#include "backgroundMeshDecomposition.H"
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#include "cellShape.H"
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#include "cellModeller.H"
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#include "DynamicField.H"
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#include "isoSurfaceCell.H"
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#include "vtkSurfaceWriter.H"
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#include "syncTools.H"
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using namespace Foam;
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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// Tolerance (as fraction of the bounding box). Needs to be fairly lax since
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// usually meshes get written with limited precision (6 digits)
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static const scalar defaultMergeTol = 1e-6;
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// Get merging distance when matching face centres
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scalar getMergeDistance
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(
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const argList& args,
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const Time& runTime,
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const boundBox& bb
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)
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{
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scalar mergeTol = defaultMergeTol;
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args.optionReadIfPresent("mergeTol", mergeTol);
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scalar writeTol =
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Foam::pow(scalar(10.0), -scalar(IOstream::defaultPrecision()));
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Info<< "Merge tolerance : " << mergeTol << nl
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<< "Write tolerance : " << writeTol << endl;
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if (runTime.writeFormat() == IOstream::ASCII && mergeTol < writeTol)
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{
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FatalErrorInFunction
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<< "Your current settings specify ASCII writing with "
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<< IOstream::defaultPrecision() << " digits precision." << endl
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<< "Your merging tolerance (" << mergeTol << ") is finer than this."
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<< endl
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<< "Please change your writeFormat to binary"
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<< " or increase the writePrecision" << endl
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<< "or adjust the merge tolerance (-mergeTol)."
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<< exit(FatalError);
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}
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scalar mergeDist = mergeTol * bb.mag();
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Info<< "Overall meshes bounding box : " << bb << nl
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<< "Relative tolerance : " << mergeTol << nl
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<< "Absolute matching distance : " << mergeDist << nl
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<< endl;
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return mergeDist;
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}
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void printMeshData(const polyMesh& mesh)
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{
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// Collect all data on master
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globalIndex globalCells(mesh.nCells());
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labelListList patchNeiProcNo(Pstream::nProcs());
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labelListList patchSize(Pstream::nProcs());
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const labelList& pPatches = mesh.globalData().processorPatches();
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patchNeiProcNo[Pstream::myProcNo()].setSize(pPatches.size());
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patchSize[Pstream::myProcNo()].setSize(pPatches.size());
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forAll(pPatches, i)
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{
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const processorPolyPatch& ppp = refCast<const processorPolyPatch>
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(
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mesh.boundaryMesh()[pPatches[i]]
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);
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patchNeiProcNo[Pstream::myProcNo()][i] = ppp.neighbProcNo();
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patchSize[Pstream::myProcNo()][i] = ppp.size();
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}
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Pstream::gatherList(patchNeiProcNo);
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Pstream::gatherList(patchSize);
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// Print stats
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globalIndex globalBoundaryFaces(mesh.nFaces()-mesh.nInternalFaces());
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label maxProcCells = 0;
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label totProcFaces = 0;
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label maxProcPatches = 0;
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label totProcPatches = 0;
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label maxProcFaces = 0;
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for (label proci = 0; proci < Pstream::nProcs(); proci++)
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{
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Info<< endl
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<< "Processor " << proci << nl
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<< " Number of cells = " << globalCells.localSize(proci)
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<< endl;
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label nProcFaces = 0;
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const labelList& nei = patchNeiProcNo[proci];
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forAll(patchNeiProcNo[proci], i)
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{
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Info<< " Number of faces shared with processor "
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<< patchNeiProcNo[proci][i] << " = " << patchSize[proci][i]
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<< endl;
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nProcFaces += patchSize[proci][i];
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}
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Info<< " Number of processor patches = " << nei.size() << nl
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<< " Number of processor faces = " << nProcFaces << nl
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<< " Number of boundary faces = "
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<< globalBoundaryFaces.localSize(proci) << endl;
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maxProcCells = max(maxProcCells, globalCells.localSize(proci));
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totProcFaces += nProcFaces;
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totProcPatches += nei.size();
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maxProcPatches = max(maxProcPatches, nei.size());
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maxProcFaces = max(maxProcFaces, nProcFaces);
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}
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// Stats
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scalar avgProcCells = scalar(globalCells.size())/Pstream::nProcs();
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scalar avgProcPatches = scalar(totProcPatches)/Pstream::nProcs();
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scalar avgProcFaces = scalar(totProcFaces)/Pstream::nProcs();
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// In case of all faces on one processor. Just to avoid division by 0.
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if (totProcPatches == 0)
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{
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avgProcPatches = 1;
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}
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if (totProcFaces == 0)
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{
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avgProcFaces = 1;
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}
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Info<< nl
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<< "Number of processor faces = " << totProcFaces/2 << nl
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<< "Max number of cells = " << maxProcCells
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<< " (" << 100.0*(maxProcCells-avgProcCells)/avgProcCells
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<< "% above average " << avgProcCells << ")" << nl
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<< "Max number of processor patches = " << maxProcPatches
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<< " (" << 100.0*(maxProcPatches-avgProcPatches)/avgProcPatches
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<< "% above average " << avgProcPatches << ")" << nl
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<< "Max number of faces between processors = " << maxProcFaces
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<< " (" << 100.0*(maxProcFaces-avgProcFaces)/avgProcFaces
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<< "% above average " << avgProcFaces << ")" << nl
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<< endl;
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}
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// Return cellID
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label cellLabel
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(
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const Vector<label>& nCells,
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const label i,
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const label j,
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const label k
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)
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{
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return i*nCells[1]*nCells[2]+j*nCells[2]+k;
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}
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label vtxLabel
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(
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const Vector<label>& nCells,
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const label i,
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const label j,
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const label k
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)
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{
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Vector<label> nPoints
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(
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nCells[0]+1,
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nCells[1]+1,
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nCells[2]+1
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);
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return i*nPoints[1]*nPoints[2]+j*nPoints[2]+k;
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}
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autoPtr<polyMesh> generateHexMesh
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(
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const IOobject& io,
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const point& origin,
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const vector& cellSize,
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const Vector<label>& nCells
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)
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{
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pointField points;
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if (nCells[0]+nCells[1]+nCells[2] > 0)
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{
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points.setSize((nCells[0]+1)*(nCells[1]+1)*(nCells[2]+1));
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// Generate points
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for (label i = 0; i <= nCells[0]; i++)
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{
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for (label j = 0; j <= nCells[1]; j++)
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{
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for (label k = 0; k <= nCells[2]; k++)
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{
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point pt = origin;
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pt.x() += i*cellSize[0];
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pt.y() += j*cellSize[1];
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pt.z() += k*cellSize[2];
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points[vtxLabel(nCells, i, j, k)] = pt;
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}
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}
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}
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}
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const cellModel& hex = *(cellModeller::lookup("hex"));
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cellShapeList cellShapes(nCells[0]*nCells[1]*nCells[2]);
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labelList hexPoints(8);
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label celli = 0;
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for (label i = 0; i < nCells[0]; i++)
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{
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for (label j = 0; j < nCells[1]; j++)
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{
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for (label k = 0; k < nCells[2]; k++)
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{
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hexPoints[0] = vtxLabel(nCells, i, j, k);
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hexPoints[1] = vtxLabel(nCells, i+1, j, k);
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hexPoints[2] = vtxLabel(nCells, i+1, j+1, k);
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hexPoints[3] = vtxLabel(nCells, i, j+1, k);
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hexPoints[4] = vtxLabel(nCells, i, j, k+1);
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hexPoints[5] = vtxLabel(nCells, i+1, j, k+1);
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hexPoints[6] = vtxLabel(nCells, i+1, j+1, k+1);
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hexPoints[7] = vtxLabel(nCells, i, j+1, k+1);
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cellShapes[celli++] = cellShape(hex, hexPoints);
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}
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}
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}
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faceListList boundary(0);
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wordList patchNames(0);
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wordList patchTypes(0);
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word defaultFacesName = "defaultFaces";
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word defaultFacesType = polyPatch::typeName;
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wordList patchPhysicalTypes(0);
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return autoPtr<polyMesh>
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(
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new polyMesh
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(
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io,
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xferMoveTo<pointField>(points),
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cellShapes,
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boundary,
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patchNames,
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patchTypes,
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defaultFacesName,
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defaultFacesType,
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patchPhysicalTypes
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)
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);
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}
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// Determine for every point a signed distance to the nearest surface
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// (outside is positive)
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tmp<scalarField> signedDistance
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(
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const scalarField& distSqr,
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const pointField& points,
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const searchableSurfaces& geometry,
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const labelList& surfaces
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)
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{
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tmp<scalarField> tfld(new scalarField(points.size(), Foam::sqr(GREAT)));
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scalarField& fld = tfld();
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// Find nearest
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List<pointIndexHit> nearest;
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labelList nearestSurfaces;
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searchableSurfacesQueries::findNearest
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(
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geometry,
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surfaces,
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points,
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scalarField(points.size(), Foam::sqr(GREAT)),//distSqr
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nearestSurfaces,
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nearest
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);
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// Determine sign of nearest. Sort by surface to do this.
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DynamicField<point> surfPoints(points.size());
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DynamicList<label> surfIndices(points.size());
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forAll(surfaces, surfI)
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{
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// Extract points on this surface
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surfPoints.clear();
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surfIndices.clear();
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forAll(nearestSurfaces, i)
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{
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if (nearestSurfaces[i] == surfI)
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{
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surfPoints.append(points[i]);
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surfIndices.append(i);
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}
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}
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// Calculate sideness of these surface points
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label geomI = surfaces[surfI];
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List<volumeType> volType;
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geometry[geomI].getVolumeType(surfPoints, volType);
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// Push back to original
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forAll(volType, i)
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{
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label pointI = surfIndices[i];
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scalar dist = mag(points[pointI] - nearest[pointI].hitPoint());
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volumeType vT = volType[i];
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if (vT == volumeType::OUTSIDE)
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{
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fld[pointI] = dist;
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}
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else if (vT == volumeType::INSIDE)
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{
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fld[i] = -dist;
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}
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else
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{
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FatalErrorInFunction
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<< "getVolumeType failure, neither INSIDE or OUTSIDE"
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<< exit(FatalError);
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}
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}
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}
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return tfld;
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}
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// Main program:
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int main(int argc, char *argv[])
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{
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argList::addNote
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(
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"Generate foamyHexMesh-consistent representation of surfaces"
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);
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argList::addBoolOption
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(
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"writeMesh",
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"write the resulting mesh and distance fields"
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);
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argList::addOption
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(
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"mergeTol",
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"scalar",
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"specify the merge distance relative to the bounding box size "
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"(default 1e-6)"
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);
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#include "setRootCase.H"
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#include "createTime.H"
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runTime.functionObjects().off();
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const bool writeMesh = args.optionFound("writeMesh");
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if (writeMesh)
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{
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Info<< "Writing resulting mesh and cellDistance, pointDistance fields."
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<< nl << endl;
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}
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IOdictionary foamyHexMeshDict
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(
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IOobject
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(
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"foamyHexMeshDict",
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runTime.system(),
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runTime,
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IOobject::MUST_READ_IF_MODIFIED,
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IOobject::NO_WRITE
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)
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);
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// Define/load all geometry
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searchableSurfaces allGeometry
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(
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IOobject
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(
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"cvSearchableSurfaces",
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runTime.constant(),
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"triSurface",
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runTime,
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IOobject::MUST_READ,
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IOobject::NO_WRITE
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),
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foamyHexMeshDict.subDict("geometry"),
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foamyHexMeshDict.lookupOrDefault("singleRegionName", true)
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);
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Random rndGen(64293*Pstream::myProcNo());
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conformationSurfaces geometryToConformTo
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(
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runTime,
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rndGen,
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allGeometry,
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foamyHexMeshDict.subDict("surfaceConformation")
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);
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cellShapeControl cellShapeControls
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(
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runTime,
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foamyHexMeshDict.subDict("motionControl"),
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allGeometry,
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geometryToConformTo
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);
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// Generate starting block mesh
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vector cellSize;
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{
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const treeBoundBox& bb = geometryToConformTo.globalBounds();
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// Determine the number of cells in each direction.
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const vector span = bb.span();
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vector nScalarCells = span/cellShapeControls.defaultCellSize();
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// Calculate initial cell size to be a little bit smaller than the
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// defaultCellSize to avoid initial refinement triggering.
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Vector<label> nCells = Vector<label>
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(
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label(nScalarCells.x())+2,
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label(nScalarCells.y())+2,
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label(nScalarCells.z())+2
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);
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cellSize = vector
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(
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span[0]/nCells[0],
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span[1]/nCells[1],
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span[2]/nCells[2]
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);
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Info<< "Generating initial hex mesh with" << nl
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<< " bounding box : " << bb << nl
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<< " nCells : " << nCells << nl
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<< " cellSize : " << cellSize << nl
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<< endl;
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autoPtr<polyMesh> meshPtr
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(
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generateHexMesh
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(
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IOobject
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(
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polyMesh::defaultRegion,
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runTime.constant(),
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runTime
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),
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bb.min(),
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cellSize,
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(
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Pstream::master()
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? nCells
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: Vector<label>(0, 0, 0)
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)
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)
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);
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Info<< "Writing initial hex mesh to " << meshPtr().instance() << nl
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<< endl;
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meshPtr().write();
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}
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// Distribute the initial mesh
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if (Pstream::parRun())
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{
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#include "createMesh.H"
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Info<< "Loaded mesh:" << endl;
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printMeshData(mesh);
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// Allocate a decomposer
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|
IOdictionary decompositionDict
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|
(
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IOobject
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|
(
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"decomposeParDict",
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runTime.system(),
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mesh,
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IOobject::MUST_READ_IF_MODIFIED,
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IOobject::NO_WRITE
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)
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);
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autoPtr<decompositionMethod> decomposer
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(
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decompositionMethod::New
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(
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decompositionDict
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)
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);
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labelList decomp = decomposer().decompose(mesh, mesh.cellCentres());
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// Global matching tolerance
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const scalar tolDim = getMergeDistance
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(
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args,
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runTime,
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mesh.bounds()
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);
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// Mesh distribution engine
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fvMeshDistribute distributor(mesh, tolDim);
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Info<< "Wanted distribution:"
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<< distributor.countCells(decomp) << nl << endl;
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// Do actual sending/receiving of mesh
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autoPtr<mapDistributePolyMesh> map = distributor.distribute(decomp);
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// Print some statistics
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//Info<< "After distribution:" << endl;
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//printMeshData(mesh);
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mesh.setInstance(runTime.constant());
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Info<< "Writing redistributed mesh" << nl << endl;
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mesh.write();
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}
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|
|
|
Info<< "Refining backgroud mesh according to cell size specification" << nl
|
|
<< endl;
|
|
|
|
backgroundMeshDecomposition backgroundMesh
|
|
(
|
|
runTime,
|
|
rndGen,
|
|
geometryToConformTo,
|
|
foamyHexMeshDict
|
|
);
|
|
|
|
if (writeMesh)
|
|
{
|
|
runTime++;
|
|
Info<< "Writing mesh to " << runTime.timeName() << endl;
|
|
backgroundMesh.mesh().write();
|
|
}
|
|
|
|
const scalar tolDim = getMergeDistance
|
|
(
|
|
args,
|
|
runTime,
|
|
backgroundMesh.mesh().bounds()
|
|
);
|
|
|
|
|
|
faceList isoFaces;
|
|
pointField isoPoints;
|
|
|
|
{
|
|
// Apply a distanceSurface to it.
|
|
const fvMesh& fvm = backgroundMesh.mesh();
|
|
|
|
volScalarField cellDistance
|
|
(
|
|
IOobject
|
|
(
|
|
"cellDistance",
|
|
fvm.time().timeName(),
|
|
fvm.time(),
|
|
IOobject::NO_READ,
|
|
IOobject::NO_WRITE,
|
|
false
|
|
),
|
|
fvm,
|
|
dimensionedScalar("zero", dimLength, 0)
|
|
);
|
|
|
|
const searchableSurfaces& geometry = geometryToConformTo.geometry();
|
|
const labelList& surfaces = geometryToConformTo.surfaces();
|
|
|
|
|
|
// Get maximum search size per cell
|
|
scalarField distSqr(cellDistance.size());
|
|
|
|
const labelList& cellLevel = backgroundMesh.cellLevel();
|
|
forAll(cellLevel, celli)
|
|
{
|
|
// The largest edge of the cell will always be less than the
|
|
// span of the bounding box of the cell.
|
|
distSqr[celli] = magSqr(cellSize)/pow(2, cellLevel[celli]);
|
|
}
|
|
|
|
{
|
|
// Internal field
|
|
cellDistance.internalFieldRef() = signedDistance
|
|
(
|
|
distSqr,
|
|
fvm.C(),
|
|
geometry,
|
|
surfaces
|
|
);
|
|
// Patch fields
|
|
forAll(fvm.C().boundaryField(), patchi)
|
|
{
|
|
const pointField& cc = fvm.C().boundaryField()[patchi];
|
|
fvPatchScalarField& fld = cellDistance.boundaryField()[patchi];
|
|
scalarField patchDistSqr
|
|
(
|
|
fld.patch().patchInternalField(distSqr)
|
|
);
|
|
fld = signedDistance(patchDistSqr, cc, geometry, surfaces);
|
|
}
|
|
|
|
// On processor patches the fvm.C() will already be the cell centre
|
|
// on the opposite side so no need to swap cellDistance.
|
|
|
|
if (writeMesh)
|
|
{
|
|
cellDistance.write();
|
|
}
|
|
}
|
|
|
|
|
|
// Distance to points
|
|
pointScalarField pointDistance
|
|
(
|
|
IOobject
|
|
(
|
|
"pointDistance",
|
|
fvm.time().timeName(),
|
|
fvm.time(),
|
|
IOobject::NO_READ,
|
|
IOobject::NO_WRITE,
|
|
false
|
|
),
|
|
pointMesh::New(fvm),
|
|
dimensionedScalar("zero", dimLength, 0)
|
|
);
|
|
{
|
|
scalarField pointDistSqr(fvm.nPoints(), -sqr(GREAT));
|
|
for (label facei = 0; facei < fvm.nInternalFaces(); facei++)
|
|
{
|
|
label own = fvm.faceOwner()[facei];
|
|
label ownDistSqr = distSqr[own];
|
|
|
|
const face& f = fvm.faces()[facei];
|
|
forAll(f, fp)
|
|
{
|
|
pointDistSqr[f[fp]] = max(pointDistSqr[f[fp]], ownDistSqr);
|
|
}
|
|
}
|
|
syncTools::syncPointList
|
|
(
|
|
fvm,
|
|
pointDistSqr,
|
|
maxEqOp<scalar>(),
|
|
-sqr(GREAT) // null value
|
|
);
|
|
|
|
pointDistance.internalFieldRef() = signedDistance
|
|
(
|
|
pointDistSqr,
|
|
fvm.points(),
|
|
geometry,
|
|
surfaces
|
|
);
|
|
|
|
if (writeMesh)
|
|
{
|
|
pointDistance.write();
|
|
}
|
|
}
|
|
|
|
isoSurfaceCell iso
|
|
(
|
|
fvm,
|
|
cellDistance,
|
|
pointDistance,
|
|
0, //distance,
|
|
false //regularise
|
|
);
|
|
|
|
isoFaces.setSize(iso.size());
|
|
forAll(isoFaces, i)
|
|
{
|
|
isoFaces[i] = iso[i].triFaceFace();
|
|
}
|
|
isoPoints = iso.points();
|
|
}
|
|
|
|
|
|
pointField mergedPoints;
|
|
faceList mergedFaces;
|
|
labelList pointMergeMap;
|
|
PatchTools::gatherAndMerge
|
|
(
|
|
tolDim,
|
|
primitivePatch
|
|
(
|
|
SubList<face>(isoFaces, isoFaces.size()),
|
|
isoPoints
|
|
),
|
|
mergedPoints,
|
|
mergedFaces,
|
|
pointMergeMap
|
|
);
|
|
|
|
vtkSurfaceWriter writer;
|
|
writer.write
|
|
(
|
|
runTime.path(),
|
|
"iso",
|
|
mergedPoints,
|
|
mergedFaces
|
|
);
|
|
|
|
Info<< "End\n" << endl;
|
|
|
|
return 0;
|
|
}
|
|
|
|
|
|
// ************************************************************************* //
|