Commit Graph

4165 Commits

Author SHA1 Message Date
Mark Olesen
1cdba9b269 ENH: make checkMesh writing of bad edges optional (#2771)
- primarily relevant for finite-area meshes, in which case they can be
  considered to be an additional, detailed diagnositic that is
  normally not needed (clutters the file system).

  Writing can be enabled with the `-write-edges` option.
2023-06-13 20:41:53 +02:00
Andrew Heather
b87db82c05 ENH: particleTracks - reinstated label field output 2023-06-13 14:13:58 +01:00
mattijs
adc38d55ac ENH: coupled: enforce consistency. See #2783 2023-06-01 08:14:42 +00:00
mattijs
fcbfa40b0b ENH: checkMesh: small message change 2023-05-30 10:41:15 +01:00
Mark Olesen
8d2bf3fc2e ENH: soft update of autoPtr<fileOperation> to refPtr<fileOperation>
Co-authored-by: mattijs <mattijs>
2023-05-23 15:03:23 +02:00
Mark Olesen
8a060e87cb ENH: fileHandler support for faMeshDistributor and field distributors
- fatten the interface to continue allowing write control with a bool
  or with a dedicated file handler. This may slim down in the future.

Co-authored-by: mattijs <mattijs>
2023-05-23 15:01:09 +02:00
Mark Olesen
a34262966b STYLE: use fileOperation nProcs() instead of setNProcs() 2023-05-22 18:04:21 +02:00
Mark Olesen
821d395259 ENH: use refPtr fileHandler in decomposeFaFields, faMeshReconstructor 2023-05-22 17:59:33 +02:00
Mark Olesen
9cd14bc8b0 STYLE: remove unused isWriteProc() methods from distribute fields 2023-05-22 17:46:16 +02:00
Mark Olesen
5eebc75845 ENH: improved UPstream gather/scatter functionality
- added UPstream::allGatherValues() with a direct call to MPI_Allgather.
  This enables possible benefit from a variety of internal algorithms
  and simplifies the caller

    Old:
        labelList nPerProc
        (
            UPstream::listGatherValues<label>(patch_.size(), myComm)
        );
        Pstream::broadcast(nPerProc, myComm);

    New:

        const labelList nPerProc
        (
            UPstream::allGatherValues<label>(patch_.size(), myComm)
        );

- Pstream::allGatherList uses MPI_Allgather for contiguous values
  instead of the hand-rolled tree walking involved with
  gatherList/scatterList.

-
- simplified the calling parameters for mpiGather/mpiScatter.

  Since send/recv data types are identical, the send/recv count
  is also always identical. Eliminates the possibility of any
  discrepancies.

  Since this is a low-level call, it does not affect much code.
  Currently just Foam::profilingPstream and a UPstream internal.

BUG: call to MPI_Allgather had hard-coded MPI_BYTE (not the data type)

- a latent bug since it is currently only passed char data anyhow
2023-05-22 17:18:35 +02:00
Mark Olesen
302eb7b560 REGRESSION: createBaffles : incorrect dictionary lookup
- was introduced with f7a7f1c14c, only affected very recent develop
2023-05-20 18:59:20 +02:00
Mark Olesen
f41d1879b9 STYLE: prefer isHeaderClass<Type>() check instead of Type::typeName
- use typeHeaderOk<regIOobject>(false) for some generic file existence
  checks. Often had something like labelIOField as a placeholder, but
  that may be construed to have a particular something.
2023-05-19 00:48:14 +02:00
Mark Olesen
87cb811db2 COMP: fix library linkage (#2784), silence some unused variable warnings 2023-05-19 00:46:52 +02:00
Mark Olesen
a5d9ad3a5c STYLE: use noexcept creation of InfoProxy and dereference as '*iproxy'
- this removes the 'magic' use of the exposed t_ member in favour
  of a generic dereference
2023-05-18 18:23:46 +02:00
Mark Olesen
f7a7f1c14c ENH: reduced warnings about createBaffles on processor patches (#2781)
- coupled patches are treated distinctly and independently of
  internalFacesOnly, it makes little sense to report them with a
  warning about turning off boundary faces (which would not work
  anyhow).

STYLE: update code style for createBaffles
2023-05-17 11:46:57 +02:00
Kutalmis Bercin
59b1cf080e ENH: Tensor/SymmTensor: add devSymm and devTwoSymm funcs to avoid intermediates 2023-05-15 17:05:10 +01:00
Mark Olesen
783934ccad ENH: add global topology check in checkMesh and makeFaMesh (#2771)
- detect when boundary patches are multiply connected across edges

STYLE: initialize some faMesh values
2023-05-09 19:30:58 +02:00
Mark Olesen
31600c96d4 ENH: output finiteArea patchID with foamToVTK -with-ids
- can be quite useful for debugging/orientation with complex
  geometries
2023-05-09 19:30:58 +02:00
Mark Olesen
f462a850ce ENH: added polyBoundaryMesh patchID(meshFacei) method
- this complements the whichPatch(meshFacei) method [binary search]
  and the list of patchID() by adding internal range checks.

  eg,
     Before
     ~~~~~~
     if (facei >= mesh.nInternalFaces() && facei < mesh.nFaces())
     {
         patchi = pbm.patchID()[facei - mesh.nInternalFaces()];
         ...
     }

     After
     ~~~~~
     patchi = pbm.patchID(facei);

     if (patchi >= 0)
     {
         ...
     }
2023-05-09 19:30:58 +02:00
Mark Olesen
8e32db2b5f STYLE: more explicit use of REGISTER when storing fields
ENH: add phaseScopedName convenience method

- unites IOobject::scopedName + phasePropertyName
2023-05-09 19:30:57 +02:00
Mark Olesen
16591012e9 ENH: add -verbose option to surface conversion, cleanup
- by default, reduce the amount of output

ENH: support default text description for -verbose option

- simplifies use in more places.
2023-05-09 19:30:57 +02:00
Mark Olesen
e967305ef2 STYLE: use calculatedType() and zeroGradientType() methods 2023-05-02 13:34:12 +02:00
Mark Olesen
ee39e3d276 STYLE: use explicit REGISTER option when storing fields 2023-04-25 13:45:08 +02:00
Mark Olesen
2b1061420c STYLE: remove trailing space, tabs 2023-04-24 15:37:33 +02:00
Mark Olesen
09dd913077 ENH: use primitive fields when calculating triSurface fields (#2758) 2023-04-13 20:54:50 +02:00
Mark Olesen
475ed5cc32 STYLE: readOnProc/writeOnProc instead of 'valid' for IO 2023-04-04 15:04:26 +02:00
Mark Olesen
25bc7d65f7 STYLE: prefer REGISTER/NO_REGISTER instead of true/false for IOobject
- self-documenting
2023-03-10 14:16:32 +00:00
Mark Olesen
d5c0852de1 ENH: improve diagnostic fields for checkFaMesh -write-vtk
ENH: support VTK output of procIDs for point data for some writers

TUT: areaWrite for drippingChair
2023-03-02 20:50:52 +01:00
Mark Olesen
f0a196a908 STYLE: include primitivePatch.H (instead of PrimitivePatch.H)
- further de-clutter in the future

ENH: PrimitivePatchInterpolation with unique_ptr for memory management
2023-02-27 15:41:25 +01:00
Mark Olesen
e623e6a865 STYLE: favour include word.H instead of string.H
- in many places the string.H include is redundant anyhow.
  May wish to change to foamString.H (or equiv) in the future
2023-02-27 15:41:25 +01:00
Mark Olesen
d88272f031 ENH: relocate zero_one to pTraits, allows reuse for scalar clamping
ENH: add pTraits and IO for std::int8_t

STYLE: cull some implicitly available includes

- pTraits.H is included by label/scalar etc
- zero.H is included by UList

STYLE: cull redundant forward declarations for Istream/Ostream
2023-02-27 15:41:25 +01:00
Mark Olesen
68bbd8f3a8 Merge remote-tracking branch 'origin/master' into develop 2023-02-21 10:21:31 +01:00
Mark Olesen
1cc72ea7e3 STYLE: use clamp/clamp_range instead of min(max(..., upper), lower) 2023-02-21 10:10:43 +01:00
Mark Olesen
ba6667a344 STYLE: use clamp/clamp_range instead of max(min(..., upper), lower) 2023-02-21 10:10:43 +01:00
Mark Olesen
3d8a6a5433 ENH: use GeometricField clamp_min, clamp_max, clamp_range
- newer naming allows for less confusing code.
  Eg,
      max(lower)  ->  clamp_min(lower)
      min(upper)  ->  clamp_max(upper)

- prefer combined method, for few operations.
  Eg,
      max(lower) + min(upper) -> clamp_range(lower, upper)

  The updated naming also helps avoid some obvious coding errors.
  Eg,

     Re.min(1200.0);
     Re.max(18800.0);

  instead of
     Re.clamp_range(1200.0, 18800.0);

- can also use implicit conversion of zero_one to MinMax<Type> for
  this type of code:

      lambda_.clamp_range(zero_one{});
2023-02-21 10:05:26 +01:00
Mark Olesen
fb69a54bc3 ENH: avoid prior communication when using mapDistribute
- in most cases can simply construct mapDistribute with the sendMap
  and have it take care of communication and addressing for the
  corresponding constructMap.

  This removes code duplication, which in some cases was also using
  much less efficient mechanisms (eg, combineReduce on list of
  lists, or an allGatherList on the send sizes etc) and also
  reduces the number of places where Pstream::exchange/exchangeSizes
  is being called.

ENH: reduce communication in turbulentDFSEMInlet

- was doing an allGatherList to populate a mapDistribute.
  Now simply use PstreamBuffers mechanisms directly.
2023-02-14 23:22:55 +01:00
Mark Olesen
2db3e2b64f STYLE: simplify ensightMeshReader with emplace_back/push_back
STYLE: emplace for mesh zones
2023-02-11 09:21:43 +01:00
Mark Olesen
d597b3f959 STYLE: check iterator validity with good() instead of found()
- aligns better with other container checks
2023-02-10 17:12:48 +01:00
Mark Olesen
8ee7595a77 ENH: foamToVTK improvements for (-no-internal, -no-boundary)
- skip loading of fields with -no-internal, -no-boundary

- suppress reporting fields with -no-internal, -no-boundary

- cache loaded volume field for reuse with point interpolation.
  Trade off some memory overhead against reading twice.

  NOTE: this issue will not be evident with foamToEnsight since there
  it only handles cell data *or* point data (not both), so a field is
  only ever loaded/processed once.
2023-01-31 12:45:39 +01:00
Mark Olesen
5672bb296f ENH: use cmptMag, cmptMultiply instead of replacing field components 2023-01-31 12:36:41 +01:00
Mark Olesen
ea2bedf073 ENH: add coupledFaPatch::delta()
- symmetrical evaluation for processor patches, eliminates
  scalar/vector multiply followed by projection.

STYLE: use evaluateCoupled instead of local versions
2023-01-31 12:36:41 +01:00
Mark Olesen
eb8b51b475 ENH: use back(), pop_back() instead remove()
- adjust looping to resemble LIFO pattern

STYLE: adjust some string includes
2023-01-27 09:50:46 +01:00
Mark Olesen
94a79ef24f STYLE: explicit reference to mesh db for schemes, interfaceTracking etc 2023-01-23 15:05:04 +01:00
Mark Olesen
ba153df8db ENH: improved handling for clamping
- proper component-wise clamping for MinMax clamp().

- construct clampOp from components

- propagate clamp() method from GeometricField to FieldField and Field

- clamp_min() and clamp_max() for one-sided clamping,
  as explicit alternative to min/max free functions which can
  be less intuitive and often involve additional field copies.

- top-level checks to skip applying invalid min/max ranges
  and bypass the internal checks of MinMax::clamp() etc.
2023-01-23 14:52:29 +01:00
Mark Olesen
03ab6c1a9d COMP: remove commented Make/options item (#2668)
COMP: update include for CGAL-5.5 (#2665)

  old:  Robust_circumcenter_filtered_traits_3
  new:  Robust_weighted_circumcenter_filtered_traits_3

COMP: adjust CGAL rule for OSX (#2664)

- since CGAL is now header-only, the previous OSX-specific rules have
  become redundant
2023-01-23 09:39:30 +01:00
Andrew Heather
7e61f36c12 RELEASE: Updated headers to v2212 2022-12-21 16:16:18 +00:00
Mark Olesen
4cccd5f854 COMP: smoothSurfaceData was building into FOAM_USER_APPBIN 2022-12-21 16:16:17 +00:00
mattijs
fa7f0e1b67 ENH: pureZoneMixture: different mixture properties according to cellZone 2022-12-14 15:07:00 +00:00
Mark Olesen
4b94ac97c2 ENH: dimensioned/dimensionedSet handle optional read as per dictionary 2022-12-13 10:09:46 +01:00
mattijs
69be54107d ENH: IOobject headerClassName now initialised to empty value
- was previously populated with "IOobject" (the typeName) but then
  cannot easily detect if the object was actually read.
  Also clear the headerClassName on a failed read

BUG: parallel inconsistency in regIOobject::readHeaderOk

- headerOk() checked with master, but possible parallel operations
  within it
2022-11-25 12:48:45 +01:00