Commit Graph

2063 Commits

Author SHA1 Message Date
Mark Olesen
87cb811db2 COMP: fix library linkage (#2784), silence some unused variable warnings 2023-05-19 00:46:52 +02:00
Mark Olesen
a5d9ad3a5c STYLE: use noexcept creation of InfoProxy and dereference as '*iproxy'
- this removes the 'magic' use of the exposed t_ member in favour
  of a generic dereference
2023-05-18 18:23:46 +02:00
Mark Olesen
f7a7f1c14c ENH: reduced warnings about createBaffles on processor patches (#2781)
- coupled patches are treated distinctly and independently of
  internalFacesOnly, it makes little sense to report them with a
  warning about turning off boundary faces (which would not work
  anyhow).

STYLE: update code style for createBaffles
2023-05-17 11:46:57 +02:00
Mark Olesen
783934ccad ENH: add global topology check in checkMesh and makeFaMesh (#2771)
- detect when boundary patches are multiply connected across edges

STYLE: initialize some faMesh values
2023-05-09 19:30:58 +02:00
Mark Olesen
8e32db2b5f STYLE: more explicit use of REGISTER when storing fields
ENH: add phaseScopedName convenience method

- unites IOobject::scopedName + phasePropertyName
2023-05-09 19:30:57 +02:00
Mark Olesen
e967305ef2 STYLE: use calculatedType() and zeroGradientType() methods 2023-05-02 13:34:12 +02:00
Mark Olesen
2b1061420c STYLE: remove trailing space, tabs 2023-04-24 15:37:33 +02:00
Mark Olesen
25bc7d65f7 STYLE: prefer REGISTER/NO_REGISTER instead of true/false for IOobject
- self-documenting
2023-03-10 14:16:32 +00:00
Mark Olesen
f0a196a908 STYLE: include primitivePatch.H (instead of PrimitivePatch.H)
- further de-clutter in the future

ENH: PrimitivePatchInterpolation with unique_ptr for memory management
2023-02-27 15:41:25 +01:00
Mark Olesen
d88272f031 ENH: relocate zero_one to pTraits, allows reuse for scalar clamping
ENH: add pTraits and IO for std::int8_t

STYLE: cull some implicitly available includes

- pTraits.H is included by label/scalar etc
- zero.H is included by UList

STYLE: cull redundant forward declarations for Istream/Ostream
2023-02-27 15:41:25 +01:00
Mark Olesen
68bbd8f3a8 Merge remote-tracking branch 'origin/master' into develop 2023-02-21 10:21:31 +01:00
Mark Olesen
1cc72ea7e3 STYLE: use clamp/clamp_range instead of min(max(..., upper), lower) 2023-02-21 10:10:43 +01:00
Mark Olesen
fb69a54bc3 ENH: avoid prior communication when using mapDistribute
- in most cases can simply construct mapDistribute with the sendMap
  and have it take care of communication and addressing for the
  corresponding constructMap.

  This removes code duplication, which in some cases was also using
  much less efficient mechanisms (eg, combineReduce on list of
  lists, or an allGatherList on the send sizes etc) and also
  reduces the number of places where Pstream::exchange/exchangeSizes
  is being called.

ENH: reduce communication in turbulentDFSEMInlet

- was doing an allGatherList to populate a mapDistribute.
  Now simply use PstreamBuffers mechanisms directly.
2023-02-14 23:22:55 +01:00
Mark Olesen
2db3e2b64f STYLE: simplify ensightMeshReader with emplace_back/push_back
STYLE: emplace for mesh zones
2023-02-11 09:21:43 +01:00
Mark Olesen
d597b3f959 STYLE: check iterator validity with good() instead of found()
- aligns better with other container checks
2023-02-10 17:12:48 +01:00
Mark Olesen
5672bb296f ENH: use cmptMag, cmptMultiply instead of replacing field components 2023-01-31 12:36:41 +01:00
Mark Olesen
eb8b51b475 ENH: use back(), pop_back() instead remove()
- adjust looping to resemble LIFO pattern

STYLE: adjust some string includes
2023-01-27 09:50:46 +01:00
Mark Olesen
03ab6c1a9d COMP: remove commented Make/options item (#2668)
COMP: update include for CGAL-5.5 (#2665)

  old:  Robust_circumcenter_filtered_traits_3
  new:  Robust_weighted_circumcenter_filtered_traits_3

COMP: adjust CGAL rule for OSX (#2664)

- since CGAL is now header-only, the previous OSX-specific rules have
  become redundant
2023-01-23 09:39:30 +01:00
mattijs
fa7f0e1b67 ENH: pureZoneMixture: different mixture properties according to cellZone 2022-12-14 15:07:00 +00:00
Mark Olesen
ac4f580d09 ENH: cleanup treeData items (#2609)
Changes / Improvements

- more consistent subsetting, interface

  * Extend the use of subset and non-subset collections with uniform
    internal getters to ensure that the subset/non-subset versions
    are robustly handled.

  * operator[](label) and objectIndex(label) for standardized access
    to the underlying item, or the original index, regardless of
    subsetting or not.

  * centres() and centre(label) for representative point cloud
    information.

  * nDim() returns the object dimensionality (0: point, 1: line, etc)
    these can be used to determine how 'fat' each shape may be
    and whether bounds(labelList) may contribute any useful information.

  * bounds(labelList) to return the full bound box required for
    specific items. Eg, the overall bounds for various 3D cells.

- easier construction of non-caching versions. The bounding boxes are
  rarely cached, so simpler constructors without the caching bool
  are provided.

- expose findNearest (bound sphere) method to allow general use
  since this does not actually need a tree.

- static helpers

  The boxes() static methods can be used by callers that need to build
  their own treeBoundBoxList of common shapes (edge, face, cell)
  that are also available as treeData types.

  The bounds() static methods can be used by callers to determine the
  overall bound-box size prior to constructing an indexedOctree
  without writing ad hoc code inplace.

  Not implemented for treeDataPrimitivePatch since similiar
  functionality is available directly from the PrimitivePatch::box()
  method with less typing.

========
BREAKING: cellLabels(), faceLabels(), edgeLabel() access methods

- it was always unsafe to use the treeData xxxLabels() methods without
  subsetting elements. However, since the various classes
  (treeDataCell, treeDataEdge, etc) automatically provided
  an identity lookup, this problem was not apparent.

  Use objectIndex(label) to safely de-reference to the original index
  and operator[](index) to de-reference to the original object.
2022-11-24 12:21:01 +00:00
Mark Olesen
e5006a62d7 ENH: use simpler boundBox handling
- use default initialize boundBox instead of invertedBox
- reset() instead of assigning from invertedBox
- extend (three parameter version) and grow method
- inflate(Random) instead of extend + re-assigning
2022-11-24 12:21:01 +00:00
Mark Olesen
1339c3357b ENH: general boundBox/treeBoundBox improvements
- null() static method
  * as const reference to the invertedBox with the appropriate casting.

- boundBox inflate(random)
  * refactored from treeBoundBox::extend, but allows in-place modification

- boundBox::hexFaces() instead of boundBox::faces
  * rarely used, but avoids confusion with treeBoundBox::faces
    and reuses hexCell face definitions without code duplication

- boundBox::hexCorners() for corner points corresponding to a hexCell.
  Can also be accessed from a treeBoundBox without ambiguity with
  points(), which could be hex corners (boundBox) or octant corners
  (treeBoundBox)

- boundBox::add with pairs of points
  * convenient (for example) when adding edges or a 'box' that has
    been extracted from a primitive mesh shape.

- declare boundBox nPoints(), nFaces(), nEdges() as per hexCell

ENH: return invertedBox instead of FatalError for empty trees

- similar to #2612

ENH: cellShape(HEX, ...) + boundBox hexCorners for block meshes

STYLE: cellModel::ref(...) instead of de-reference cellModel::ptr(...)
2022-11-24 12:21:01 +00:00
Mark Olesen
0ba458fdbc ENH: add primitiveMesh cellBb()
- the boundBox for a given cell, using the cheapest calculation:

  - cellPoints if already available, since this will involve the
    fewest number of min/max comparisions.

  - otherwise walk the cell faces: via the cell box() method
    to avoid creating demand-driven cellPoints etc.
2022-11-24 12:21:01 +00:00
Mark Olesen
27c2cdc040 ENH: vector mag(), magSqr() methods - complementary to dist(), distSqr()
ENH: use direct access to pointHit as point(), use dist(), distSqr()

- if the pointHit has already been checked for hit(), can/should
  simply use point() noexcept access subsequently to avoid redundant
  checks. Using vector distSqr() methods provides a minor optimization
  (no itermediate temporary), but can also make for clearer code.

ENH: copy construct pointIndexHit with different index

- symmetric with constructing from a pointHit with an index

STYLE: prefer pointHit point() instead of rawPoint()
2022-11-24 12:21:01 +00:00
Mark Olesen
5e0a23edd5 STYLE: compacter help information for -debug-switch etc. 2022-11-18 21:24:17 +01:00
Mark Olesen
25e874a4f0 ENH: provide MPI native minOp, maxOp reduce multiple values
- consistent with sumOp

ENH: globalIndex with gatherNonLocal tag, and use leading dispatch tags

- useful for gather/write where the master data can be written
 separately.  Leading vs trailing dispatch tags for more similarity to
 other C++ conventions.
2022-11-15 14:00:18 +01:00
Mark Olesen
799d247142 ENH: PatchTools::gatherAndMerge with recovery of the globalIndex
- support globalIndex for points/faces as an output parameter,
  which allows reuse in subsequent field merge operations.

- make pointMergeMap an optional parameter. This information is not
  always required. Eg, if only using gatherAndMerge to combine faces
  but without any point fields.

ENH: make globalIndex() noexcept, add globalIndex::clear() method
2022-11-08 16:48:08 +00:00
Mark Olesen
70208a7399 ENH: use returnReduceAnd(), returnReduceOr() functions
DOC: document which MPI send/recv are associated with commType
2022-11-08 16:48:08 +00:00
Mark Olesen
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
Mark Olesen
b9c15b8585 COMP: missing linkage for ensightToFoam (ldd linker) 2022-11-08 17:13:46 +01:00
mattijs
5163e52974 ENH: ensightToFoam: Ensight Gold mesh converter 2022-11-07 21:22:18 +00:00
Mark Olesen
9433898941 ENH: support construction of pointIndexHit from pointHit
STYLE: combine templated/non-templated headers (reduced clutter)

STYLE: use hitPoint(const point&) combined setter

- same as setHit() + setPoint(const point&)

ENH: expose and use labelOctBits::pack method for addressing
2022-10-31 18:36:14 +01:00
Mark Olesen
65dc440f3c COMP: silence clang -Wbitwise-instead-of-logical (triggered by boost/cgal) 2022-10-12 19:44:01 +02:00
Mark Olesen
4585a2d229 COMP: fix bad constructor resolution
STYLE: simpler initialization
2022-10-12 19:32:56 +02:00
Mark Olesen
18eeba116a ENH: use boundBox building blocks in misc places 2022-10-12 13:19:48 +02:00
Mark Olesen
61deacd24d ENH: boundBox improvements (#2609)
- construct boundBox from Pair<point> of min/max limits,
  make sortable

- additional bounding box intersections (linePointRef), add noexcept

- templated access for boundBox hex-corners
  (used to avoid temporary point field).
  Eg, unrolled plane/bound-box intersection with early exit

- bounding box grow() to expand box by absolute amounts
  Eg,

      bb.grow(ROOTVSMALL);   // Or: bb.grow(point::uniform(ROOTVSMALL));
  vs
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

- treeBoundBox bounding box extend with two or three parameters.
  The three parameter version includes grow(...) for reduced writing.
  Eg,

      bb = bb.extend(rndGen, 1e-4, ROOTVSMALL);

  vs
      bb = bb.extend(rndGen, 1e-4);
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

  This also permits use as const variables or parameter passing.
  Eg,

      const treeBoundBox bb
      (
          treeBoundBox(some_points).extend(rndGen, 1e-4, ROOTVSMALL)
      );
2022-10-12 13:19:44 +02:00
Mark Olesen
779a2ca084 ENH: adjust fileName methods for similarity to std::filesystem::path
- stem(), replace_name(), replace_ext(), remove_ext() etc

- string::contains() method - similar to C++23 method

  Eg,
      if (keyword.contains('/')) ...
  vs
      if (keyword.find('/') != std::string::npos) ...
2022-10-11 17:58:22 +02:00
Mark Olesen
ea51c2c0e4 STYLE: return orientedType, Switch directly instead of const reference
- noexcept on some Time methods

ENH: pass through is_oriented() method for clearer coding

- use logical and/or/xor instead of bitwise versions (clearer intent)
2022-10-04 15:51:26 +02:00
mattijs
5677e10d90 ENH: checkMesh: report overlapping zones. See #2521 2022-10-03 11:41:42 +01:00
Mark Olesen
56e9f7bf4b BUG: blockMesh mergePatchPairs fails with edge-shared points (fixes #2589)
- remedy by performing the attach() action sequentially (as per
  stitchMesh changes). This ensures that the current point addressing
  is always used and avoids references to the already-merged points
  (which is what causes the failure).

ENH: improve handling of empty patch removal

- only remove empty *merged* patches, but leave any other empty
  patches untouched since they may intentional placeholders for other
  parts of a workflow.

- remove any empty point/face zones created for patch merging
2022-09-26 18:03:23 +02:00
Mark Olesen
5130c7bcbc STYLE: use polyPatchList instead of List<polyPatch*> in more places 2022-09-26 18:03:23 +02:00
mattijs
6f764c8d02 ENH: checkMesh: check patches across processors 2022-09-22 09:24:01 +01:00
Mark Olesen
097008544c STYLE: adjust range check in Foam::factorial (FULLDEBUG)
STYLE: consistent use of $(LIB_SRC) in Make/options
2022-09-07 16:25:45 +02:00
Mark Olesen
5218bfd721 Merge remote-tracking branch 'origin/master' into develop 2022-08-19 12:50:50 +02:00
Mark Olesen
b6a6e40c27 BUG: incorrect order for output scaling (transformPoints, ...)
- the output write scaling should be applied *after* undoing the
  effects of the specified rotation centre. Fixes #2566

ENH: update option names for transformPoints and surfaceTransformPoints

- prefer  '-auto-centre' and '-centre', but also accept the previous
  options '-auto-origin' and '-origin' as aliases.

  Changing to '-centre' avoids possible confusion with
  coordinate system origin().
2022-08-18 11:46:08 +02:00
Mattijs Janssens
27c3d0c23b snappyHexMesh : refine based on curvature 2022-08-04 17:09:38 +00:00
mattijs
77ecc4c6e0 BUG: sortedToc: reference to copy. Fixes #2554 2022-08-03 15:05:25 +01:00
Mark Olesen
c4d18e97a3 ENH: additional methods for OBJstream
- write point fields
- writeLine (takes two points)
- writeFace (takes list of face loop points)
2022-07-19 11:17:51 +02:00
Mark Olesen
3d892ace29 STYLE: set readOpt(..), writeOpt(..) by parameter, not by assignment
STYLE: qualify format/version/compression with IOstreamOption not IOstream

STYLE: reduce number of lookups when scanning {fa,fv}Solution

STYLE: call IOobject::writeEndDivider as static
2022-07-19 11:17:47 +02:00
Mark Olesen
d222cb1cee ENH: moveMesh -endTime option to restrict duration of motion testing 2022-07-13 19:09:44 +02:00