Commit Graph

3938 Commits

Author SHA1 Message Date
Mark Olesen
a98d5ebf32 ENH: handle ';' for fluent input (fixes #2249) 2021-10-29 17:04:51 +02:00
mattijs
b157614e00 ENH: redistributePar: write collated format. #806
- supports redistributePar -decompose -fileHandler collated
- supports redistributePar -reconstruct
- does not support redistributePar with collated in redistribution mode
2021-10-19 12:18:07 +01:00
Mark Olesen
fe8c630936 BUG: Foam::cp inadvertently creates recursive directories (fixes #2235)
- noticed by Robin Knowles with `decomposePar -fields -copyZero`

  The internals for the Foam:cp method combine the behaviour of
  a regular `cp` and `cp -R` combined.

  When source and target are both directories, the old implementation
  created a subdirectory for the contents.
  This normally fine,

      ok:  cp "path1/0/" to "path2/1" -> "path2/1/2"
      BUT: cp "path1/0/" to "path2/0" -> "path2/0/0" !!

  Now add check for the basenames first.
  If they are identical, we probably meant to copy directory contents
  only, without the additional subdir layer.

BUG: decomposePar -fields -copyZero copies the wrong directory

- was using the current time name (usually latest) instead of copying
  the 0 directory

ENH: accept 0.orig directories as a fallback to copy if the 0 directory
is missing
2021-10-18 14:58:17 +02:00
Kutalmis Bercin
9923cc9bf8 BUG: applyBoundaryLayer: disable application on disconnected cells (fixes #1513) 2021-10-04 15:24:47 +01:00
Mark Olesen
8a3dc0527c ENH: -no-finite-area, -no-lagrangian options for some parallel utils 2021-10-01 15:26:50 +02:00
Mark Olesen
8628d4216c BUG: foamToVTK patch/proc ids missing if there are no volume fields 2021-09-27 13:18:27 +02:00
Mark Olesen
96adf3ae80 ENH: add IOobject::objectRelPath() for compact output (#2195) 2021-09-07 16:35:34 +02:00
Mark Olesen
610711ac47 ENH: inGroups support for mesh zones
- provisions for alternative groupings of zones

- extend indices() for boundary meshes to handle wordRes as well
2021-09-07 16:35:10 +02:00
mattijs
d5fd97d991 ENH: createPatch: check for overlapping patches. Fixes #2193 2021-09-01 08:29:32 +01:00
mattijs
9678b1dc22 ENH: splitMeshRegions: combine cellZones. See #2046
addZones: specifies the name instead of synthesising
2021-08-11 16:14:23 +01:00
mattijs
60aeca32a8 ENH: checkMesh: add stabilisation. Fixes #2171 2021-07-28 17:56:48 +01:00
Mark Olesen
56a5a43910 ENH: simplify mapped patch cloning in extrudeToRegionMesh 2021-07-28 16:07:31 +02:00
Mark Olesen
d31f351c15 ENH: blockMesh enhancements
- support non-uniform scaling, prescaling and cartesian coordinate
  transformations.

  Eg, stretch in one direction and then rotate
  ```
  prescale  (1.5 1 1);
  transform
  {
      origin   (0 0 0);
      rotation
      {
          type  axisAngle;
          axis  (0 0 1);
          angle 45;
      }
  }
  ```

- support "transformed" versions of blockMesh vertices, topology.
  With the additional of transformations etc, a simplistic application
  of a single scale parameter is no longer sufficient.

    new:  blMesh.vertices(true);
    old:  blMesh.vertices() * blMesh.scaleFactor();

    new:  blMesh.topology(true);
    old:  N/A

- add individual edge access for blockDescriptor.
  Saves copying and duplicate calculations.

- handle '(block face)' specification for curved faces,
  which is ok for external block faces, but likely somewhat
  questionable if used for internal block faces.
2021-07-28 13:14:44 +02:00
Mark Olesen
d49566ea34 ENH: improve alignment of tetCell and cellShape
- added hexCell for some more encapsulation
2021-07-28 11:35:08 +02:00
Mark Olesen
0c15f773e0 STYLE: remove/replace unneeded SortableList 2021-07-15 16:47:27 +02:00
Mark Olesen
6a390f6ad1 COMP: remove includes of defunct locations (fixes #2143) 2021-06-29 13:43:44 +02:00
Andrew Heather
e3796745ed CONFIG: Updated headers to v2106
Minor clean-up
2021-06-28 09:14:42 +01:00
sergio
6101272133 ENH: Adding subMesh option to momentumError and div FOs
1) Adding subMesh capabilities to momentumError and div FOs.
	- A subMesh is created from cellZones.
	- The operators (div, etc) are only calculated in the subMesh.

2) Optionally, halo cells can be added to the cellZones.

3) New helper class to handle the subMesh creation and field mapping.
2021-06-23 08:11:12 +00:00
Mark Olesen
ae02a86562 ENH: multi-region support for reconstructParMesh (#2072) 2021-06-11 17:18:35 +02:00
Mark Olesen
620fe96c02 ENH: multi-region support for rotateMesh (#2072) 2021-06-11 17:18:35 +02:00
Mark Olesen
c4b0f3c63d STYLE: direct inclusion of region options 2021-06-11 17:18:20 +02:00
Mark Olesen
b6b4ab071d ENH: additional patch expressions (#2114)
- snGrad, internalField, neighbourField.
  Functional use as per swak: "... + internalField(T) ..."

ENH: additional volume/patch expressions

- deltaT()

STYLE: rename exprDriverWriter -> fvExprDriverWriter

- the original class name was a misnomer since it holds a reference
  to fvExprDriver

BUG: expression faceToPoint/pointToFace definitions were flipped

ENH: refactor expression hierarchy and code style

- handle TimeState reference at the top-level for simpler derivations

- unified internal search parameters (cruft)
2021-06-10 18:02:16 +02:00
Mark Olesen
9f26e6738f COMP: fix linkage on some libs and utils (general and mingw)
- remove finiteVolume dependency from libfaDecompose
2021-05-31 20:54:58 +02:00
Mark Olesen
5d9e42cb70 ENH: multi-region support for transformPoints (#2080) 2021-05-30 21:33:20 +02:00
Mark Olesen
3e87a46498 ENH: multi-region support for foamToEnsight (#2080)
- additional finite-area support too.
2021-05-30 21:02:59 +02:00
Mark Olesen
f2d634c49f ENH: cellShape::reset() - simplifies modification of existing shapes 2021-05-30 21:02:59 +02:00
Mark Olesen
e8d048d777 ENH: parallel makeFaMesh with addressing and field decomposition (#2084) 2021-05-27 21:04:55 +02:00
Mark Olesen
0ae17908a2 ENH: collect and cleanup decompose and reconstruct methods (#2084)
- new faDecompose and faReconstruct libraries

- provide common readFields in the faDecompose library
2021-05-27 21:04:55 +02:00
Mark Olesen
0cf4aede6e ENH: initial revamp of faMesh to improve modularity (#2084)
- improved separation of patch creation that is also parallel-aware,
  which now allows creation in parallel

- memory-safe use of PtrList for adding patches, with a more generalized
  faPatchData helper

- use uindirectPrimitivePatch instead of indirectPrimitivePatch
  for internal patch handling.

- align boundary methods with polyMesh equivalents

- system/faMeshDefinition instead of constant/faMesh/faMeshDefinition
  as per blockMesh convention. Easier to manage definitions, easier
  for cleanup.

- drop inheritence from GeoMesh.
2021-05-27 21:04:55 +02:00
mattijs
9a3d27e3df ENH: blockMesh: enable named blocks and mergePatchPairs. Fixes #2088. 2021-05-20 16:13:52 +01:00
Mattijs Janssens
4028738327 ENH: redistributePar - detect if reconstruct is required (#2092) 2021-05-19 18:16:06 +02:00
Mark Olesen
0df219d1b3 ENH: expose decomposePar -dry-run options -domains, -method
- can now drop older Test-decomposePar for exploration purposes
  and simply use -dry-run with the -domains and -method options.

- write VTK file instead of volScalarField in combination
  with -dry-run and -cellDist.

  Avoids adding any OpenFOAM fields and is usually faster to load.
  Also easier to rename than a volScalarField would be when exploring
  multiple decompositions.
2021-05-19 18:16:05 +02:00
Mark Olesen
0ea709e5ee STYLE: minor code reduction in reconstructParMesh 2021-05-19 18:16:05 +02:00
Mark Olesen
0affbceaca ENH: 'foamToVTK -finite-area' option (compat: -finiteAreaFields)
- aligns with the resulting VTK subdirectory name
2021-05-19 18:16:05 +02:00
Mark Olesen
2dbabb242b ENH: namedDictionary for managing keyword/dictionary combinations
- reworked from the openfoam.org wordAndDictionary version.

Allows, for example, named entries in topoSet.
2021-05-19 17:13:24 +02:00
Mattijs Janssens
5120c51ba1 ENH: splitMeshRegions: combine cellZones. See #2046 2021-05-17 10:53:40 +00:00
Mark Olesen
5022591c36 ENH: return old file handler on change
- intended for the following type of use:

      auto oldHandler = fileHandler(fileOperation::NewUncollated());

      ... do something that only works with uncollated

      // Restore previous (if any)
      if (oldHandler)
      {
          fileHandler(std::move(oldHandler));
      }

ENH: make fileOperation distributed(bool) mutable

- use is "static-like" and akin to Pstream::parRun(bool),
  thus allow toggling of the switch without a const_cast
2021-05-13 11:39:30 +02:00
Mark Olesen
2a438385a3 STYLE: make polyMesh constructor explicit
- use polyMesh::defaultRegion instead of fvMesh::defaultRegion and
  others via static inheritance. (92 vs ~25 occurrences)
2021-05-12 11:24:57 +02:00
Mark Olesen
0a78e685ee ENH: introduce intermediate vtk::polyWriter class
- reduces code, simplifies creation of new, specialized polyData
  writers.

- new templated vtk::GenericPatchWriter, which adds support for
  writing both uindirectPrimitivePatch + indirectPrimitivePatch types.

- handle geometric fields separately from regular fields with
    * vtk:GenericPatchGeoFieldsWriter
    * vtk:indirectPatchGeoFieldsWriter
    * vtk:uindirectPatchGeoFieldsWriter
2021-05-10 14:34:44 +02:00
mattijs
1177dbd111 ENH: checkMesh: -allRegions. See #2072 2021-05-07 09:46:33 +02:00
Mark Olesen
c410edf928 ENH: centralized handling of -allRegions, -regions, -region (#2072)
Step 1.
    include "addAllRegionOptions.H"

    Adds the -allRegions, -regions and -region options to argList.

Step 2.
    include "getAllRegionOptions.H"

    Processes the options with -allRegions selecting everything
    from the regionProperties.

    OR use -regions to specify multiple regions (from
       regionProperties), and can also contain regular expressions

    OR use the -region option

    Specifying a single -regions NAME (not a regular expresssion)
    is the same as -region NAME and doesn't use regionProperties

    Creates a `wordList regionNames`

Step 3.
    Do something with the region names.
    Either directly, or quite commonly with the following

    include "createNamedMeshes.H"

    Creates a `PtrList<fvMesh> meshes`

STYLE: add description to some central include files
2021-05-07 09:46:33 +02:00
Mark Olesen
86f627b9e6 ENH: consolidate decomposition model, constructors for decomposition methods
- make regionName an optional constructor parameter, which eliminates
  a separate set of constructors and construction tables. Adjust
  internals to treat a missing/empty regionName as a no-op.

- pass in fallback dictionary content via new IOdictionary constructor
  with a pointer

ENH: further relax check for matching number of processor dirs

- if the "numberOfSubdomains" entry is missing (or even zero)
  ignore checks of processor dirs as meaningless.
2021-04-27 09:14:48 +02:00
Mark Olesen
b62437081e ENH: support optional fallback content for IOdictionary 2021-04-26 17:09:38 +02:00
Mark Olesen
385f92732b STYLE: default construct empty dictionaries
- some code used copy construct from dictionary::null instead.
  The result is the same but suggests that something else may be intended.
  Only need dictionary::null for const-ref usage.
2021-04-26 17:09:38 +02:00
Mark Olesen
7c494a6b64 ENH: accept quoted surface names in surfaceFeatureExtract (#2071)
- allows use of surface names starting with a digit
  (by quoting the name).

  User is responsible for not generating bad names for output files.
  Eg "bad.**.name", since these will be difficult to handle from the
  shell
2021-04-23 11:40:29 +02:00
Mark Olesen
2b7b3700c2 ENH: replace keyType with wordRe for matching selectors.
- The keyType is primarily used within dictionary reading, whereas
  wordRe and wordRes are used for selectors in code.
  Unifying on wordRe and wordRes reduces the number matching options.
2021-04-19 16:33:42 +00:00
Mark Olesen
95cd8ee75c ENH: improve hashing overloads of string-types and HashTable/HashSet
- additional dummy template parameter to assist with supporting
  derived classes. Currently just used for string types, but can be
  extended.

- provide hash specialization for various integer types.
  Removes the need for any forwarding.

- change default hasher for HashSet/HashTable from 'string::hash'
  to `Hash<Key>`. This avoids questionable hashing calls and/or
  avoids compiler resolution problems.

  For example,
  HashSet<label>::hasher and labelHashSet::hasher now both properly
  map to Hash<label> whereas previously HashSet<label> would have
  persistently mapped to string::hash, which was incorrect.

- standardize internal hashing functors.

  Functor name is 'hasher', as per STL set/map and the OpenFOAM
  HashSet/HashTable definitions.

  Older code had a local templated name, which added unnecessary
  clutter and the template parameter was always defaulted.
  For example,

      Old:  `FixedList<label, 3>::Hash<>()`
      New:  `FixedList<label, 3>::hasher()`
      Unchanged:  `labelHashSet::hasher()`

  Existing `Hash<>` functor namings are still supported,
  but deprecated.

- define hasher and Hash specialization for bitSet and PackedList

- add symmetric hasher for 'face'.
  Starts with lowest vertex value and walks in the direction
  of the next lowest value. This ensures that the hash code is
  independent of face orientation and face rotation.

NB:
  - some of keys for multiphase handling (eg, phasePairKey)
    still use yet another function naming: `hash` and `symmHash`.
    This will be targeted for alignment in the future.
2021-04-19 16:33:42 +00:00
Mark Olesen
b060378dca ENH: improve consistency of fileName handling windows/non-windows (#2057)
- wrap command-line retrieval of fileName with an implicit validate.

  Instead of this:
      fileName input(args[1]);
      fileName other(args["someopt"]);

  Now use this:
      auto input = args.get<fileName>(1);
      auto other = args.get<fileName>("someopt");

  which adds a fileName::validate on the inputs

  Because of how it is implemented, it will automatically also apply
  to argList getOrDefault<fileName>, readIfPresent<fileName> etc.

- adjust fileName::validate and clean to handle backslash conversion.
  This makes it easier to ensure that path names arising from MS-Windows
  are consistently handled internally.

- dictionarySearch: now check for initial '/' directly instead of
  relying on fileName isAbsolute(), which now does more things

BREAKING: remove fileName::clean() const method

- relying on const/non-const to control the behaviour (inplace change
  or return a copy) is too fragile and the const version was
  almost never used.

  Replace:
      fileName sanitized = constPath.clean();

  With:
      fileName sanitized(constPath);
      sanitized.clean());

STYLE: test empty() instead of comparing with fileName::null
2021-04-19 16:33:42 +00:00
Mark Olesen
cdbc3e2de6 ENH: List/DynamicList appendUniq() method
- affords some code reduction.

STYLE: use HashSet insert() without found() check in more places
2021-04-19 16:33:42 +00:00
Andrew Heather
3f1f191034 BUG: noise - reinstated parallel running without processor directories 2021-04-16 09:57:44 +01:00