Commit Graph

18624 Commits

Author SHA1 Message Date
Andrew Heather
b7ea6ee24e Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-24 12:05:24 +00:00
Andrew Heather
9316088550 STYLE: Relocated DFSEM tutorial 2016-11-24 12:05:12 +00:00
Mark Olesen
58fad3ab79 BUG: snappyHexMesh with -decomposeParDict option (issue #265)
- only occurs in combination with distributedTriSurfaceMesh in snappy.

- workaround similar to that previously used for surfaceRedistributePar
  (issue #60).

Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
2016-11-24 12:02:11 +01:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
2016-11-24 11:26:03 +01:00
Mark Olesen
e9e9760329 CONFIG: bump versions of various third-party sources
* boost 1_62_0 (Sept 2016)

* CGAL 4.9 (Sept 2016)
  - now has headers-only mode that could be interesting

* FFTW 3.3.5 (Jul 2016)

* openmpi 1.10.4 (Sept 2016)
  - the first openmpi 2.x release is also available, but too early to switch

* paraview 5.2.0 (Nov 2016)
  - builds without additional patching

STYLE: removed unneeded CMake environment variables
2016-11-23 14:14:06 +01:00
mattijs
fa430cc407 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-23 12:10:33 +00:00
mattijs
8c08ad6667 ENH: mergeOrSplitBaffles: allow operation on selected patches. Fixes #314. 2016-11-23 12:09:31 +00:00
Andrew Heather
ba6ae13b5a Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-23 11:22:01 +00:00
Andrew Heather
dd989a8600 BUG: Corrected constructor initialisation error introduced in last commit; code tidying 2016-11-23 11:21:23 +00:00
Andrew Heather
87a566c11c STYLE: minor code typo corrections 2016-11-22 15:34:37 +00:00
Andrew Heather
558006afd2 BUG: Corrections to commit 1f826361 for issue #306 2016-11-22 15:12:10 +00:00
Mark Olesen
e619a82ae6 COMP: minor adjustments for compiling with single-precision 2016-11-22 15:58:54 +01:00
Andrew Heather
1f826361c6 STYLE: Consistency updates to change input of <var>Name to <var>. Fixes #306 2016-11-22 14:50:33 +00:00
Mark Olesen
19bd06c850 COMP: adjust vtk formatting for 64-bit labels 2016-11-22 10:27:11 +01:00
sergio
143e99194f ENH: Adding functionality to scalarTransport FO and residence time tutorials for VOF
and single phase cases. Registration of the compressed flux in interFoam as it is
needed for the FO if used.
2016-11-21 09:21:45 -08:00
sergio
dfbb9d0900 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop
Conflicts:
	tutorials/combustion/fireFoam/LES/compartmentFire/Allclean
2016-11-21 07:39:46 -08:00
sergio
ab40ddaaf3 Adding fireCompartment tutorial for new pyrolysis thermo, thermocouple FO and EDC combustion model 2016-11-21 07:36:05 -08:00
Mark Olesen
784461b2fa ENH: make search of instances in IOobject::typeHeaderOk optional (issue #245)
- in specific cases it can be useful to suppress searching the instances.
  For example, if one only wishes to check if a "points" is available at
  the given time instance, without searching backwards through all
  times.
2016-11-21 14:28:40 +01:00
Mark Olesen
c554dc7b7d ENH: ensure written and evaluated values correspond (issue #311)
- Avoids possible discrepancy when the user selects non-coincidental
  values for executeInterval and writeInterval.

- zeroGradient and ddt2 function objects
2016-11-21 12:36:04 +01:00
Mark Olesen
cbf43acd30 ENH: provide static uniq method in wordReListMatcher (issue #259)
- this functionality will be more frequently used in the future,
  thus place in a commonly available location.
2016-11-21 10:38:22 +01:00
Mark Olesen
a6a90838fa STYLE: adjust tutorial Allrun scripts (issue #310)
- A few without a 'cd' at the start.
  Use $(getApplication) directly in more places (for clarity).
2016-11-21 10:18:00 +01:00
Mark Olesen
21679c04e4 STYLE: adjust tutorial Allclean scripts (issue #310)
- A few without a 'cd' at the start.
  Several remove files that are already covered by the cleanCase function.
2016-11-20 17:26:44 +01:00
Mark Olesen
f3cc16e42c ENH: Avoid constant/polyMesh/blockMeshDict (issue #309)
- relocate to system/blockMeshDict, which avoids it being cleaned out
  accidentally
2016-11-20 16:50:47 +01:00
Mark Olesen
8ba4e3c370 ENH: make search of time instances in IOobject optional (issue #245)
- Still needs more attention.

--
STYLE: fix minor typos in documentation
2016-11-20 14:41:43 +01:00
Mark Olesen
5c15769dfe GIT: revert back to system openmpi (issue #308)
- consistently use SYSTEMOPENMPI for both sh and csh versions
  (inadvertently changed in ee5251a7bb).
2016-11-20 13:12:02 +01:00
Mark Olesen
95e7faf309 STYLE: use the more succinct forms for argList (issue #307)
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
2016-11-20 13:06:57 +01:00
Mark Olesen
7b9fde84ce STYLE: consistent naming of 'kappa' instead of 'kappaName' etc (issue #305)
- purely cosmetic (documentation) changes
2016-11-20 11:41:52 +01:00
Mark Olesen
f55b15e387 Merge branch 'master' into 'develop'
Merge master changes/bugfixes into develop branch

See merge request !78
2016-11-20 09:48:38 +00:00
Mark Olesen
9b66285c22 Merge remote-tracking branch 'origin/externalCoupled' into develop
- update tutorial and adjust function object for updated infrastructure.
2016-11-19 18:43:34 +01:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
sergio
c659d99368 ENH: Check if the Lagragian cloud is active before reading massTotal & SOI in InjectionModel.C
If the cloud was inactive, massTotal and SOI were needed even for steady Lagrangian
2016-11-17 11:48:13 -08:00
sergio
4b4e912226 ENH: Adding writing of the motionSolver dictionary for sixDoFRigidBodyDisplacementPointPatchVectorField BC 2016-11-17 08:46:27 -08:00
sergio
de7b4b96a2 Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus 2016-11-17 08:41:38 -08:00
sergio
b7c370d76a Correcting header information for IDDESDelta 2016-11-17 08:41:08 -08:00
Andrew Heather
88c8297211 ENH: Porosity model - output cellZone bounds in the local co-ordinate system. Fixes #300 2016-11-17 13:35:35 +00:00
sergio
2d36cc97a7 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-16 16:27:36 -08:00
sergio
dbb8b04f5d ENH: Correcting Nu correlation for thermoCoupleProbes 2016-11-16 16:27:11 -08:00
Andrew Heather
d29a8afbec GIT: Resolve merge conflict 2016-11-15 10:04:08 +00:00
Andrew Heather
d2328f78cf Merge branch 'externalCoupled' into 'master'
External coupled

Improvements and bugfixes for externalCoupledFunctionObject - issues #278 #269

See merge request !72
2016-11-15 09:49:58 +00:00
Andrew Heather
b20ae1f790 Merge branch 'decomposeParDict' into 'master'
BUG: resolve some decomposeParDict problems (issues #60, #265).

- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.

See merge request !73
2016-11-15 09:46:03 +00:00
Mark Olesen
fff2ee5440 Merge branch 'surface-declutter' into 'develop'
Surface declutter - issue #294

Removing various clutter from surfMesh and triSurface
- unused classes/files (backup copies on non-release repo)
- relocate some triSurface-related classes to where they make more sense, and where they can be reused.
- improve handling of various face types in MeshedSurface and UnsortedMeshedSurface (to bridge the gap to triSurface)
- improve transfer methods for reclaiming/reusing surface allocations

See merge request !77
2016-11-14 12:43:38 +00:00
Mark Olesen
e112eb503b ENH: provide ModifiableMeshedSurface class
- A special purpose MeshedSurface that exposes the stored values
  for direct modification.

- Its usage should be restricted to special cases where the surface
  needs modifications as an atomic operation.
2016-11-14 00:45:41 +01:00
Mark Olesen
704620aea1 ENH: simplify check for metis sizes (issue #290)
- Now that the metisDecomp uses the metis definition for float/double,
  do not need to verify the scalar sizes.

Note:
- could drop precision qualifier for metis, scotch installation
  (include, lib) as being unneeded, but it is simpler to keep them
  and continue to use the FOAM_EXT_LIBBIN path
  (in case other ThirdParty software is compiled with different
  precisions).
2016-11-13 19:53:11 +01:00
Mark Olesen
52b6c49b4f ENH: provide xfer methods for the meshed surface components.
- the surfMesh classes where originally designed with limited
  (protected) access to the underlying components. This is to
  avoid unintentional direct changes, since these can quickly
  lead to inconsistencies with the topology addressing etc.

  However, if we wish to efficiently adjust surfaces, it is useful
  to modify the components directly.
  The compromise is to provide 'xfer' methods:
    - xferFaces()
    - xferPoints()
    - xferZones()
  These transfer the contents to an Xfer container for reuse, while
  also resetting the topology addressing.  To apply the changes,
  the reset() method is used.
2016-11-12 23:42:17 +01:00
Mark Olesen
d2b4284271 BUG: all addressing not being cleared when transfer/resetting surfMesh 2016-11-14 00:42:52 +01:00
Mark Olesen
c56edc262c ENH: add read/write for labelledTri surfaces (issue #294)
- extends existing surfaceFormats to include surfaces with
  labelledTri as their face representation.
2016-11-12 12:05:45 +01:00
Mark Olesen
d026f90827 ENH: support writing of unsorted surface for AC3D format (issue #294)
- needed for triSurface output (when it comes)
2016-11-13 23:05:43 +01:00
Mark Olesen
b799b5d65d ENH: surfMesh support for reading compressed binary stl files (issue #294)
- increases coverage.

STYLE: relocate some core pieces into fileFormats
2016-11-13 23:04:38 +01:00
Mark Olesen
88876e46c1 ENH: better handling of various face types in MeshedSurface (issue #294)
- ensure that MeshedSurface and UnsortedMeshedSurface can also work
  with labelledTri faces.

- nTriangles() convenience method for meshed surfaces

- MeshedSurface::addZonesToFaces() method to copy zone information
  into the labelledTri per-face region storage.
  The goal is to replace the triSurface reading routines with
  run-time selectable ones from surfMesh.
2016-11-12 23:42:00 +01:00
Mark Olesen
a32eff4e59 ENH: ensure face, triFace and labelledTri all work consistently (issue #294)
- triFace() now initialized with '-1', which makes it behave
  equivalently to face(label).

- supply default region=0 for some labelledTri constructors.
  This allows labelledTri to work more like a triFace and makes it
  easier to use in templated methods and eases conversion from
  triFace to a labelledTri.

- labelledTri(const labelUList&) can now be used when converting
  from a face. It can have 3 values (use default region)
  or 4 values (with region).

- face, triFace, labelledTri now all support construction with
  initializer lists. This can be useful for certain types of code.
  Eg,
      triFace     f1{a, b, c};
      face        f2{a, b, c};
      labelledTri f3{a, b, c};

  Work without ambiguity.
  Also useful for templated methods:

      FaceType f{remap[a], remap[b], remap[c]};
2016-11-12 20:57:48 +01:00