Commit Graph

3679 Commits

Author SHA1 Message Date
mattijs
bf43a9d91e ENH: snappyHexMesh: allow medialAxis to shrink 1 or 2 cell thick channel. Fixes #986. 2018-08-30 11:38:38 +01:00
Andrew Heather
d3812b9b69 Merge remote-tracking branch 'origin/master' into develop 2018-08-29 13:51:40 +01:00
mattijs
be96876a18 BUG: mergeMeshes. Use wrong option. See #650. 2018-08-27 09:01:36 +01:00
mattijs
d99707facd COMP: Allwmake: pass through targetType 2018-08-02 10:18:59 +01:00
Andrew Heather
6e35bcda70 ENH: Updated config for release v1806 2018-06-28 12:56:00 +01:00
Will Bainbridge
2ae4bf73d9 fileHandler: Added flush method
This method waits until all the threads have completed IO operations and
then clears any cached information about the files on disk. This
replaces the deactivation of threading by means of zeroing the buffer
size when writing and reading of a file happen in sequence. It also
allows paraFoam to update the list of available times.

Patch contributed by Mattijs Janssens
Resolves bug report https://bugs.openfoam.org/view.php?id=2962
2018-06-27 11:45:58 +01:00
Mark Olesen
a410f52e6d COMP: handle unset WM_OSTYPE for cmake targets (issue #909)
- regularise referencing of OpenFOAM env variables, sources etc.
2018-06-26 09:48:57 +02:00
Andrew Heather
f4d3c071ff Merge branch 'feature-processorLOD' into 'develop-pre-release'
Feature processor level of detail (LOD)

See merge request Development/OpenFOAM-plus!210
2018-06-25 08:55:20 +01:00
Andrew Heather
c3f52a696c ENH: Added time reporting to mapFieldsPar 2018-06-21 16:20:03 +01:00
Andrew Heather
8cbe11f158 BUG: Corrected arg lookup name 2018-06-21 08:12:55 +01:00
Andrew Heather
1c64911367 ENH: Updated meshToMesh to be able to use the new processorLOD 2018-06-20 07:57:25 +01:00
Mark Olesen
d637b6eb78 ENH: avoid parse problems caused by #calc directives (fixes #722)
- The additional output generated by #calc directives in the
  controlDict or decomposeParDict causes issues for the RunFunctions
  extraction of 'application' and 'numberOfSubdomains'.

  Avoid by using -disableFunctionEntries, which also has the side-effect
  of disabling '#include'.
2018-06-19 12:38:53 +02:00
Mark Olesen
4d6f0498d6 ENH: use vector::normalise and VectorSpace::normalised for clarity 2018-08-10 15:18:29 +02:00
Mark Olesen
c1964d7807 ENH: distinguish between face areaNormal/unitNormal in the code 2018-08-10 15:43:06 +02:00
Mark Olesen
b81a2f2fa6 STYLE: use edge::unitVec() for improved code clarity 2018-08-10 14:41:32 +02:00
mattijs
4637e4582c ENH: redistributePar: allow nDomains 1 in decomposeParDict. Fixes #924.
Note: this removes the option to reconstruct by setting nDomains to 1.
      You now have to explicitly use -reconstruct to reconstruct.
2018-08-09 15:17:21 +01:00
Mark Olesen
ae36f5f504 ENH: change argList get<> and getList<> from read<>, readList<>
- more consistent with dictionary method naming. The get<> or
  getList<> returns a value, doesn't read into a existing location.
2018-08-09 11:27:36 +02:00
Mark Olesen
ca5d91239d STYLE: use edgeHashes include
STYLE: use initial hash size 128 instead of 100 in a few places
2018-08-08 23:54:27 +02:00
Mark Olesen
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
Mark Olesen
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
Mark Olesen
de2eed3e7d ENH: additional methods and improvements to plane
- signedDistance() method is like distance() but retains
  the positive/negative sign for the side of the plane.

- the sign() method returns the sign as -1,0,+1 integer for
  classification purposes where it is important to distinguish between
  a zero value and a positive value (eg, for cutting). Optional
  tolerance can be supplied to round for zero.

- refactor and inlined simple and frequently used methods.

- add boundBox faceCentre() method, which can be useful for creating
  clipping planes from a bounding box.
  Relocated treeBoundBox faceNormals to boundBox since they apply
  equally there - the meaning of the faces (x-min, x-max, etc)
  is the same, even if the point addressing for the faces differs.
2018-08-03 23:17:49 +02:00
Mark Olesen
84e2df4994 ENH: added ZoneMesh indices(), selection() with wordRes matcher
- rationalized code dealing with extraction of name or indices from
  coordinateSystems, polyBoundaryMesh, faBoundaryMesh, fvBoundaryMesh,
  ZoneMesh to use internal implementations that allow direct
  searching/matching without building an intermediate list of names.

- simpler and more efficient handling of patch group matching.
2018-08-03 22:40:19 +02:00
Mark Olesen
319e09e32f ENH: avoid blockMesh removal of files for special cases (issue #963)
- do not remove if the dictionary failed to load.
- do not remove if -blockTopology was used.
2018-08-03 14:30:41 +02:00
Mark Olesen
88e5334a9f ENH: IOobject::selectIO helper method
- centralizes IOobject handling and treatment of alternative locations.
  If an alternative file location is specified, it will be used instead.

- provide decompositionMethod::canonicalName instead of using
  "decomposeParDict" in various places.
2018-08-02 17:39:17 +02:00
mattijs
70801d7f48 ENH: checkMesh: output mask field. Fixes #958. 2018-08-01 13:02:07 +01:00
Mark Olesen
51eac273aa STYLE: remove unused variable 2018-07-31 15:38:27 +02:00
Mark Olesen
cb919a6c41 ENH: tag some options as 'advanced' (only shown with -help-full)
General:
    * -roots, -hostRoots, -fileHandler

Specific:
    * -to <coordinateSystem> -from <coordinateSystem>

- Display -help-compat when compatibility or ignored options are available

STYLE: capitalization of options text
2018-07-31 11:54:15 +02:00
Mark Olesen
f00c7a655c COMP: rename dictionary::read<T> to dictionary::readEntry<T>
- avoids compiler ambiguity when virtual methods such as
  IOdictionary::read() exist.

- the method was introduced in 1806, and was thus not yet widely used
2018-07-30 15:52:40 +02:00
Mark Olesen
ff26b96a80 STYLE: use 'cloudObjects' instead of 'sprayObjects' 2018-07-30 13:15:38 +02:00
mattijs
b2be9fa3ff STYLE: snappyHexMesh: unused option 2018-07-26 16:55:11 +01:00
Mark Olesen
d2ccea055c STYLE: change foamUpgradeCyclics -test option to -dry-run 2018-07-26 17:35:20 +02:00
Mark Olesen
02ad76df4f ENH: allow wordHashSet filter for IOobjectList::names
- simplifies usage.
  Support syncPar check on names() to detect inconsistencies.

- simplify readFields, ReadFields and other routines by using these
  new methods.
2018-07-26 14:56:52 +02:00
Mark Olesen
a8ef5610d0 STYLE: renamed meshSubsetHelper -> fvMeshSubsetProxy 2018-07-26 01:57:16 +02:00
Mark Olesen
dbe0db1d9a ENH: fvMeshSubset improvements (issue #951)
- what was previously termed 'setLargeCellSubset()' is now simply
  'setCellSubset()' and supports memory efficient interfaces.

  The new parameter ordering avoids ambiguities caused by default
  parameters.

  Old parameter order:

      setLargeCellSubset
      (
          const labelList& region,
          const label currentRegion,
          const label patchID = -1,
          const bool syncCouples = true
      );

  New parameter order:

      setCellSubset
      (
          const label regioni,
          const labelUList& regions,
          const label patchID = -1,
          const bool syncCouples = true
      );

   And without ambiguity:

      setCellSubset
      (
          const labelUList& selectedCells,
          const label patchID = -1,
          const bool syncCouples = true
      );

- support bitSet directly for specifying the selectedCells for
  memory efficiency and ease of use.

- Additional constructors to perform setCellSubset() immediately,
  which simplifies coding.

  For example,

      meshParts.set
      (
          zonei,
          new fvMeshSubset(mesh, selectedCells)
      );

  Or even

      return autoPtr<fvMeshSubset>::New(mesh, selectedCells);
2018-07-25 18:58:00 +02:00
mattijs
1abacf0d0d ENH: topoSet: check write status. Fixes #952 2018-07-25 13:27:37 +01:00
Mark Olesen
a6b84927e4 STYLE: use sortedToc() instead of toc() followed by sort() 2018-07-25 10:29:20 +02:00
Mark Olesen
d58c142404 ENH: use restricted dictionary lookup for utilities (issue #762)
- get<label>, get<scalar> instead of readLabel, readScalar, etc.
2018-07-24 08:08:30 +02:00
Mark Olesen
fe808e24e7 ENH: add rpmToRads() convenience functions
- simplifies conversion of RPM to radians/sec for const variables
2018-07-23 22:20:26 +02:00
Mark Olesen
c8fd217e95 BUG: Foam::system command swallows first argument (fixes #901) 2018-06-22 15:18:41 +02:00
Mark Olesen
6390c18381 ENH: suppress Info output for some cases (issue #722, #893)
- add additional control via a Foam::infoDetailLevel flag, which is
  supported by a 'DetailLevel' macro.  Eg,

      DetailLevel << "some information" << nl

- When infoDetailLevel is zero, the stdout for all Foam::system() calls
  are also redirected to stderr to prevent child output from
  appearing on the parent.

- close stdin before exec in system call.
2018-06-22 12:26:33 +02:00
Mark Olesen
f7d4f52726 STYLE: update names of known solvers, consistent End value (issue #856) 2018-06-21 16:03:06 +02:00
Mark Olesen
1f953b807c ENH: use double for VTK legacy output (issue #891)
- some paraview versions (eg, on windows) don't support float, only double.

  This mostly affected the vtkSurfaceWriter.

  The foamToVTK is also affected, but since it also supports the XML
  output formats (vtp, vtu) these can be used instead.
2018-06-21 10:24:04 +02:00
Mark Olesen
ce0623ca31 BUG: foamRestoreFields blocks in parallel (issue #877) 2018-06-19 16:46:15 +02:00
mattijs
cb4ce1ffec ENH: snappyHexMesh: directional smoothing support 2018-04-11 10:24:18 +01:00
mattijs
97e00442f0 Merge remote-tracking branch 'upstream/develop' into wp3-directional-refinement 2017-12-27 11:45:28 +00:00
Mark Olesen
e60a77442c STYLE: less verbose output of available procs in redistributePar 2017-12-22 12:50:55 +01:00
Mark Olesen
3787d45c12 BUG: decomposePar -decomposeParDict fails for faMesh (closes #680)
- was using system/decomposeParDict and ignoring the command-line
  option.
2017-12-22 12:28:39 +01:00
mattijs
14f9a44f0f Merge remote-tracking branch 'upstream/develop' into wp3-directional-refinement 2017-12-21 13:24:21 +00:00
sergio
ef08bc56ba BUG: Removing finiteArea lib from option file for reconstructPar.
Modifying relaxation factors for the angledDuct for rhoPimpleFoam
2017-12-19 14:51:42 -08:00
Andrew Heather
bd181f9a6c BUG: lagrangian - corrected references to position() 2017-12-19 21:25:12 +00:00
mattijs
e97275cf12 ENH: collated support. Fixes createZeroDirectory in #675. 2017-12-21 15:05:10 +00:00
mattijs
8931e443d8 ENH: collated support. Fixes lumpedPointMotion in #675. 2017-12-21 14:53:16 +00:00
Andrew Heather
f187dd8aa3 ENH: finiteArea - integration updates 2017-12-19 17:07:08 +00:00
Mark Olesen
d20b981fef STYLE: add End markers to some tutorials and finiteArea utils (issue #671) 2017-12-19 14:59:24 +01:00
Mark Olesen
5713efede3 STYLE: use range-for in checkTopology.C
- remove odd spaces in checkMesh output
2017-12-19 12:44:10 +01:00
Prashant
c9211b6170 BUG: incorrect cellZone boundBox reported by checkMesh (closes #663)
- also incorrect number of points per zone
2017-12-19 12:24:47 +01:00
Mark Olesen
00325db33b ENH: additional options for transforming points (closes #660)
- The -rotate-angle option allows convenient specification of a
  rotation about an arbitrary axis. Eg, -rotate-angle '((1 1 1) 45)'

- The -origin option can be used to temporarily shift the origin
  for the rotation operations. For example,

      -origin '(0 0 1)' -rotate-angle '((1 0 0) 180)'

  for mirroring.
2017-12-19 11:24:08 +01:00
Andrew Heather
22e0a05e8b STYLE: finiteArea doc and style updates 2017-12-18 11:25:53 +00:00
mattijs
994138aa40 ENH: snappyHexMesh: updated directional refinement 2017-12-13 12:27:25 +00:00
mattijs
0282e47c26 ENH: snappyHexMesh: initial version of directional refinement 2017-12-11 17:23:33 +00:00
Mark Olesen
f385e3b984 ENH: finiteArea support for paraview reader plugin (paraFoam) 2017-12-06 15:10:11 +00:00
Andrew Heather
c2ff8ea99e ENH: Added finiteArea support to foamToVTK 2017-11-21 16:33:33 +00:00
Andrew Heather
a14eb71160 COMP: various compilation changes
- label-size 64 build, compiler warnings, unused template argument,
  faMatrix::clone() method

STYLE: faScalarMatrix - moved info message to within a debug scope
2017-11-14 08:41:20 +00:00
Mark Olesen
56dd71ab11 CONFIG: cmake targets are globally unique
- unify CMakeLists naming and align content
2018-07-20 12:49:25 +02:00
Mark Olesen
96b65a781d STYLE: remove spacing around forAll macros and template '> >' closing 2018-07-06 11:03:28 +02:00
Mark Olesen
ed4ffd8f89 ENH: add decomposePar -dry-run option
- can be used to test the behaviour of the decomposion and its
  characteristics without writing any decomposition to disk.
  Combine with -cellDist to visualize the expected decomposition
  result.
2018-07-19 11:04:38 +02:00
Mark Olesen
7cb5b638ad STYLE: more consistency in handling of -region vs -allRegions 2018-07-19 09:15:33 +02:00
Mark Olesen
8042647610 STYLE: use newer argList access methods 2018-07-19 08:32:18 +02:00
Mark Olesen
a592ebc073 STYLE: avoid unrestricted dictionary lookup in conversion, sampling, surfMesh
- aids with detection of excess tokens (issue #762)

- deprecated dictionary::operator[] in favour of the lookup() method
  which offers more flexibilty and clarity of purpose.
  Additionally, the read<> and get<> forms should generally be used
  instead anyhow.
2018-07-18 13:33:00 +02:00
Mark Olesen
0304911921 STYLE: more consistent use of dimensioned Zero, scalar decimal points
- use scalar(0) instead of scalar(0.0) etc
2018-07-13 10:28:48 +02:00
mattijs
9ee6036bb2 ENH: surfaceCheck. New writeSets option. Fixes #717. 2018-07-12 13:33:28 +01:00
Mark Olesen
322d642b57 ENH: verify manual input for labelToCell etc (issue #895)
DOC: document topo sources inputs in doxygen format

ENH: check for excess tokens in dictionary input (issue #762)

- various bits of code cleanup (modernization) in meshTool/sets.
2018-07-07 00:22:58 +02:00
Mark Olesen
a7e37656e8 ENH: reduce storage requirement for volumeType
- char instead of integer representation for the enumeration.

- additional constructor as lookupOrDefault from dictionary entry.
2018-07-11 08:50:38 +02:00
Andrew Heather
7b8e2b1a18 Merge remote-tracking branch 'origin/master' into develop 2018-07-10 16:42:59 +01:00
Mark Olesen
2662042d49 ENH: improve controls for Time (issue #910)
- relocate some standard functionality to TimePaths to allow a lighter
  means of managing time directories without using the entire Time
  mechanism.

- optional enableLibs for Time construction (default is on)
  and a corresponding argList::noLibs() and "-no-libs" option

STYLE:

- mark Time::outputTime() as deprecated MAY-2016

- use pre-increment for runTime, although there is no difference in
  behaviour or performance.
2018-07-02 10:20:01 +02:00
mattijs
989ee54bb1 ENH: checkMesh: output volume of cellZone. Fixes #727. 2018-07-04 12:08:24 +01:00
Mark Olesen
fd4782f754 COMP: adjustments for 64-bit label-size 2017-12-11 10:22:06 +01:00
Mark Olesen
eabce47e0d Merge branch 'feature-domain-decomposition' into 'develop'
Minor improvements for redistributePar

See merge request Development/OpenFOAM-plus!181
2017-12-08 17:09:44 +00:00
Mark Olesen
03b8275a83 ENH: add foamListRegions utility
- list all regions from constant/regionProperties:
     * foamListRegions

- list specific region type from constant/regionProperties:
     * foamListRegions fluid
     * foamListRegions solid
2017-12-08 14:05:25 +00:00
mattijs
74b557d5f2 STYLE: indentation: trailing whitespace 2017-12-08 12:26:16 +00:00
Mark Olesen
cf15d299cc ENH: remove old proc-addressing when redistributing (issue #656)
- after redistribution, the old cellProcAddressing etc files are incorrect
  and potentially troublesome.
2017-12-08 12:02:09 +00:00
mattijs
2cd84dd091 ENH: snappyHexMeshDict: description of missing switch 2017-12-04 15:30:42 +00:00
Mark Olesen
8fc6bd17c9 ENH: improvements in profiling (issue #648)
- include amount of free system memory in profiling, which can give an
  indication of when swapping is about to start

- profilingSummary utility to collect profiling from parallel
  calculations. Collects profiling information from processor
  directories and summarize the time spent and number of calls as (max
  avg min) values.
2017-12-01 15:44:20 +01:00
Mark Olesen
a9ffcab5af ENH: region-wise decomposition specification for decomposeParDict
Within decomposeParDict, it is now possible to specify a different
  decomposition method, methods coefficients or number of subdomains
  for each region individually.

  The top-level numberOfSubdomains remains mandatory, since this
  specifies the number of domains for the entire simulation.
  The individual regions may use the same number or fewer domains.

  Any optional method coefficients can be specified in a general
  "coeffs" entry or a method-specific one, eg "metisCoeffs".

  For multiLevel, only the method-specific "multiLevelCoeffs" dictionary
  is used, and is also mandatory.

----

ENH: shortcut specification for multiLevel.

  In addition to the longer dictionary form, it is also possible to
  use a shorter notation for multiLevel decomposition when the same
  decomposition method applies to each level.
2017-11-09 12:30:24 +01:00
Mark Olesen
69ea4976ac ENH: reduced verbosity when decomposing/reconstructing empty meshes
- only warn about missing cells/points if the mesh is also missing
  boundary patches.
- reduce verbosity when decomposing to an empty mesh
- skip face matching when either mesh has no faces
2017-11-06 17:06:15 +01:00
Andrew Heather
dc2177cc68 Merge branch 'feature-trisurface-cleanup' into 'develop'
consolidate surfaceFormats for reading/writing triSurface

See merge request Development/OpenFOAM-plus!174
2017-11-30 08:46:43 +00:00
Mark Olesen
c0e86940b0 ENH: minor improvements for Enum
- found() method for consistency with other classes

- operator()(name, deflt) for similarity to lookupOrDefault,
  but without a dictionary
2017-11-28 09:15:04 +01:00
Mark Olesen
966a941a64 ENH: fix foamListTimes to work with -fileHandler collated 2017-11-26 15:23:02 +01:00
Mark Olesen
6e8586df5d DEFEATURE: remove ccm26ToFoam (issue #536)
- not maintained and less functionality than ccmToFoam.
2017-11-23 14:16:09 +01:00
Mark Olesen
416a3790ea STYLE: prefer autoPtr::reset() to autoPtr::set()
- in most cases already checked valid() so don't need additional check
  for setting an existing pointer
2017-11-22 19:11:11 +01:00
Mark Olesen
f2ba618c19 STYLE: consistency in using argList::addArgument, argList::addOption 2017-11-22 12:54:28 +01:00
Mark Olesen
3ef8906a66 ENH: consolidate surfaceFormats for reading/writing triSurface (issue #294)
- eliminates previous code duplication and improves maintainability
2017-11-20 14:55:36 +01:00
Mark Olesen
3cafdccb4c ENH: add dictionary-driven multi-pass stitchMesh facility
- the dictionary-driven variant of stitchMesh allows sequential
  application of 'stitch' operation with requiring intermediate
  writing to disk.

- Without arguments:
  * stitchMesh uses a system/stitchMeshDict or -dict dict

- With arguments:
  * master/slave patches specified on the command-line as in previous
    versions.
2017-11-10 01:53:30 +01:00
Mark Olesen
7c1d8cb146 STYLE: more consistent use of labelUList and labelUIndList typedefs 2017-11-19 09:27:47 +01:00
Mark Olesen
a59c87d5ac ENH: improved zone constructors
- constructor for empty cell/face/point Zones, with contents to be
  transferred in later.

- ZoneMesh::operator(const word&) to return existing zone or a new empty one.
2017-11-10 02:09:37 +01:00
Mark Olesen
8730a7622a ENH: enumerations for known cell models in cellModel, ptr/ref lookups
- this provides a better typesafe means of locating predefined cell
  models than relying on strings. The lookup is now ptr() or ref()
  directly. The lookup functions behave like on-demand singletons when
  loading "etc/cellModels".

  Functionality is now located entirely in cellModel but a forwarding
  version of cellModeller is provided for API (but not ABI) compatibility
  with older existing user code.

STYLE: use constexpr for cellMatcher constants
2017-11-18 11:05:05 +01:00
mattijs
6b32f7b474 Merge remote-tracking branch 'origin/develop' into develop 2017-11-13 11:45:40 +00:00
mattijs
6eaa143825 BUG: foamListTimes: reinstated. Fixes #638. 2017-11-13 11:44:19 +00:00
Mark Olesen
0ca0a6264b STYLE: use readLabel/readScalar (string) instead of via IStringStream 2017-11-13 11:23:17 +01:00
Mark Olesen
14d4484fae STYLE: single-string findStrings deprecated in favour of stringOps::match
- reduces ambiguity between matching a list of strings and a single string.
2017-11-13 10:37:38 +01:00
mattijs
5a6b59d8b0 ENH: snappyHexMesh: added missing entry 2017-11-13 08:57:43 +00:00
Andrew Heather
4039933b89 Merge branch 'feature-function-object-field-input' into 'develop'
Feature function object field input

See merge request Development/OpenFOAM-plus!167
2017-11-13 09:10:55 +00:00
Mark Olesen
c51ee22101 STYLE: fix stray use of argList option() instead of [] 2017-11-09 18:59:55 +01:00
Mark Olesen
166f62f19d STYLE: spelling, doxygen 2017-11-09 11:04:34 +01:00
Mark Olesen
9edc0c15fe ENH: add rmDir silent option for all fileOperations implementations 2017-11-08 14:54:57 +01:00
Andrew Heather
ec9a7cc016 ENH: function objects - enabled 'fields' entry to use patterns for some objects 2017-11-07 17:33:09 +00:00
Andrew Heather
6aa7b6ac2a STYLE: Header clean-up 2017-11-07 11:22:58 +00:00
Andrew Heather
b8d5880447 STYLE: Header clean-up 2017-11-07 11:22:58 +00:00
Hrvoje Jasak
0c64622341 Finite area port, Hrvoje Jasak
- with sphereSurfactantFoam and sphereTransport test case
2017-09-15 12:02:25 +01:00
Mark Olesen
16db44b67d STYLE: add flex major version in '#if' conditional 2017-12-17 16:22:39 +01:00
Andrew Heather
912b38fd9c ENH: applyBoundaryLayer - added -write-nut option to write nut|nuTilda (default=no) 2017-12-15 11:15:50 +00:00
Andrew Heather
3da2aee4ef ENH: Updated wildcard handling for function object field entries 2017-12-13 20:57:56 +00:00
Mark Olesen
bc8420e14f STYLE: trailing whitespace, doxygen, error messages from fileOperation 2017-12-13 17:56:34 +01:00
Andrew Heather
d016590bbc ENH: AMIInterpolation - updated to perform face triangulation once only; code clean-up 2017-08-18 14:09:34 +01:00
Mark Olesen
c888db2e87 ENH: add foamRestoreFields utility (issue #877)
- "Restore" field names by removing the ending.
  Useful, for example, to change a UMean to U field for further
  calculation.
2018-06-15 11:01:19 +02:00
Andrew Heather
c909a5df25 GIT: resolved merge conflict 2018-06-13 14:20:18 +01:00
Andrew Heather
616b91c06e Merge branch 'master' into develop 2018-06-13 14:17:47 +01:00
Andrew Heather
387ee6b2ad ENH: Updated example usage in header. Fixes #859 2018-06-13 14:11:51 +01:00
mattijs
071d561224 BUG: refineWallLayer: incorrect handlign of useSet option. Fixes #864. 2018-06-11 13:13:44 +01:00
mattijs
0a62fb4593 ENH: postProcess: Clear dictionary to avoid merge warning. See #807. 2018-06-06 09:07:32 +01:00
Mark Olesen
84b109219a STYLE: reduced usage of Switch
- Since 'bool' and 'Switch' use the _identical_ input mechanism
  (ie, both accept true/false, on/off, yes/no, none, 1/0), the main
  reason to prefer one or the other is the output.

  The output for Switch is as text (eg, "true"), whereas for bool
  it is label (0 or 1). If the output is required for a dictionary,
  Switch may be appropriate. If the output is not required, or is only
  used for Pstream exchange, bool can be more appropriate.
2018-06-01 20:51:48 +02:00
Alexey Matveichev
8058184b0c COMP: resolve 'point' ambiguity in foamyQuadMesh
- CGAL Triangulation_2.h (version 4.12) defines a point function,
  which interferes with the Foam::point typedef.
2018-06-01 14:10:17 +02:00
Mark Olesen
a6f524b1df STYLE: -diff-etc instead of -diffEtc in foamDictionary 2018-06-01 11:36:43 +02:00
mattijs
cd8b67844f ENH: snappyHexMesh: Remove cells inside any limitRegion with level -1. Fixes #852. 2018-05-31 10:05:02 +01:00
Mark Olesen
f9fe71815a STYLE: consistent use of '= delete' for removed constructors/assignments
- make the purpose more explicit, and reduces some work for the
  compiler as well.
2018-05-30 12:03:17 +02:00
Mark Olesen
6b6b36afd3 STYLE: revert bitSet/HashSet setMany() to set() method (issue #837)
- improves backward compatibility and more naming consistency.
  Retain setMany(iter1, iter2) to avoid ambiguity with the
  PackedList::set(index, value) method.
2018-05-29 17:38:02 +02:00
Mark Olesen
3de9b2f675 COMP: resolve size ambiguity (Darwin) 2018-05-29 12:36:12 +02:00
Alexey Matveichev
5e9ba0bc72 ENH: Darwin emulation for addr2line 2018-05-29 11:21:59 +02:00
Mark Olesen
d318a630b6 ENH: add directive '#sinclude' (or '#includeIfPresent' as long name)
- consistency with make and more succinct.

- reduce code duplication in findEtcFiles.
2018-05-28 13:38:03 +02:00
Andrew Heather
aec949d7cc ENH: Consistency improvement for setting postProcessing directory name 2018-02-27 14:37:05 +00:00
Andrew Heather
853b9abb79 ENH: Utilities - add -region option when creating meshes 2018-01-16 12:10:20 +00:00
mattijs
f51ee9a0e2 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-31 17:34:16 +01:00
mattijs
ec5d9cdf01 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-29 12:13:58 +01:00
mattijs
d703f09d11 BUG: fileOperation: avoid par syn in uncollated. Fixes #846. 2018-05-29 12:13:13 +01:00
mattijs
cb74d7b9d4 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-21 17:03:58 +01:00
mattijs
f7fa618e8f Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-21 09:53:10 +01:00
Andrew Heather
ad25e18c7f Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-18 12:18:13 +01:00
Mark Olesen
48d654cf19 ENH: avoid memory leaks for HashPtrTable, PtrMap insertion (issue #749)
- disallow insert() of raw pointers, since a failed insertion
  (ie, entry already existed) results in an unmanaged pointer.

  Either insert using an autoPtr, or set() with raw pointers or autoPtr.

- IOobjectList::add() now takes an autoPtr instead of an object reference

- IOobjectList::remove() now returns an autoPtr instead of a raw pointer
2018-05-17 09:56:36 +01:00
mattijs
1275c71e50 ENH: snappyHexMeshDict: description of gapMode 2018-05-16 11:38:24 +01:00
Henry Weller
8959b8e00a ENH: Improvements to the fileHandler and collated IO
Improvements to existing functionality
--------------------------------------
  - MPI is initialised without thread support if it is not needed e.g. uncollated
  - Use native c++11 threading; avoids problem with static destruction order.
  - etc/cellModels now only read if needed.
  - etc/controlDict can now be read from the environment variable FOAM_CONTROLDICT
  - Uniform files (e.g. '0/uniform/time') are now read only once on the master only
    (with the masterUncollated or collated file handlers)
  - collated format writes to 'processorsNNN' instead of 'processors'.  The file
    format is unchanged.
  - Thread buffer and file buffer size are no longer limited to 2Gb.

The global controlDict file contains parameters for file handling.  Under some
circumstances, e.g. running in parallel on a system without NFS, the user may
need to set some parameters, e.g. fileHandler, before the global controlDict
file is read from file.  To support this, OpenFOAM now allows the global
controlDict to be read as a string set to the FOAM_CONTROLDICT environment
variable.

The FOAM_CONTROLDICT environment variable can be set to the content the global
controlDict file, e.g. from a sh/bash shell:

    export FOAM_CONTROLDICT=$(foamDictionary $FOAM_ETC/controlDict)

FOAM_CONTROLDICT can then be passed to mpirun using the -x option, e.g.:

    mpirun -np 2 -x FOAM_CONTROLDICT simpleFoam -parallel

Note that while this avoids the need for NFS to read the OpenFOAM configuration
the executable still needs to load shared libraries which must either be copied
locally or available via NFS or equivalent.

New: Multiple IO ranks
----------------------
The masterUncollated and collated fileHandlers can now use multiple ranks for
writing e.g.:

    mpirun -np 6 simpleFoam -parallel -ioRanks '(0 3)'

In this example ranks 0 ('processor0') and 3 ('processor3') now handle all the
I/O.  Rank 0 handles 0,1,2 and rank 3 handles 3,4,5.  The set of IO ranks should always
include 0 as first element and be sorted in increasing order.

The collated fileHandler uses the directory naming processorsNNN_XXX-YYY where
NNN is the total number of processors and XXX and YYY are first and last
processor in the rank, e.g. in above example the directories would be

    processors6_0-2
    processors6_3-5

and each of the collated files in these contains data of the local ranks
only. The same naming also applies when e.g. running decomposePar:

decomposePar -fileHandler collated -ioRanks '(0 3)'

New: Distributed data
---------------------

The individual root directories can be placed on different hosts with different
paths if necessary.  In the current framework it is necessary to specify the
root per slave process but this has been simplified with the option of specifying
the root per host with the -hostRoots command line option:

    mpirun -np 6 simpleFoam -parallel -ioRanks '(0 3)' \
        -hostRoots '("machineA" "/tmp/" "machineB" "/tmp")'

The hostRoots option is followed by a list of machine name + root directory, the
machine name can contain regular expressions.

New: hostCollated
-----------------

The new hostCollated fileHandler automatically sets the 'ioRanks' according to
the host name with the lowest rank e.g. to run simpleFoam on 6 processors with
ranks 0-2 on machineA and ranks 3-5 on machineB with the machines specified in
the hostfile:

    mpirun -np 6 --hostfile hostfile simpleFoam -parallel -fileHandler hostCollated

This is equivalent to

    mpirun -np 6 --hostfile hostfile simpleFoam -parallel -fileHandler collated -ioRanks '(0 3)'

This example will write directories:

    processors6_0-2/
    processors6_3-5/

A typical example would use distributed data e.g. no two nodes, machineA and
machineB, each with three processes:

    decomposePar -fileHandler collated -case cavity

    # Copy case (constant/*, system/*, processors6/) to master:
    rsync -a cavity machineA:/tmp/

    # Create root on slave:
    ssh machineB mkdir -p /tmp/cavity

    # Run
    mpirun --hostfile hostfile icoFoam \
        -case /tmp/cavity -parallel -fileHandler hostCollated \
        -hostRoots '("machineA" "/tmp" "machineB" "/tmp")'

Contributed by Mattijs Janssens
2018-03-21 12:42:22 +00:00
mattijs
d469bbae4b COMP: Allwmake: feed through 'objects' targer for wmakeCollect 2018-05-17 08:39:57 +01:00
Mark Olesen
b4a2876c56 ENH: use move construct for cellZone/faceZone 2018-03-07 11:28:05 +01:00
Mark Olesen
4fe8ed8245 STYLE: use direct iteration for HashSet
- The iterator for a HashSet dereferences directly to its key.

- Eg,

      for (const label patchi : patchSet)
      {
          ...
      }
  vs.
      forAllConstIter(labelHashSet, patchSet, iter)
      {
          const label patchi = iter.key();
          ...
      }
2018-03-06 00:29:03 +01:00
Mark Olesen
dd8341f659 ENH: make format of ExecutionTime = ... output configurable (issue #788)
- controlled by the the 'printExecutionFormat' InfoSwitch in
  etc/controlDict

      // Style for "ExecutionTime = " output
      // - 0 = seconds (with trailing 's')
      // - 1 = day-hh:mm:ss

   ExecutionTime = 112135.2 s  ClockTime = 113017 s

   ExecutionTime = 1-07:08:55.20  ClockTime = 1-07:23:37

- Callable via the new Time::printExecutionTime() method,
  which also helps to reduce clutter in the applications.
  Eg,

     runTime.printExecutionTime(Info);

  vs

     Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
         << "  ClockTime = " << runTime.elapsedClockTime() << " s"
         << nl << endl;

--

ENH: return elapsedClockTime() and clockTimeIncrement as double

- previously returned as time_t, which is less portable.
2018-04-27 15:00:34 +02:00
Mark Olesen
c0766ce8ea STYLE: consistent '// End namespace' markers 2018-04-27 09:51:35 +02:00
Andrew Heather
e6787bfa9a Merge branch 'feature-bitset' into 'develop'
ENH: new bitSet class and improved PackedList class (closes #751)

See merge request Development/OpenFOAM-plus!200
2018-04-25 11:39:59 +01:00
Mark Olesen
76cb38fbc7 CONFIG: adjust make scripts for darwin
- handling of dead links (find -L -delete unsupported)

- remove ignore case flag on 's/../../i' used in have_scotch script.
  It is unneeded and not tolerated by Darwin's sed.

- avoid embedded comments in EXE_INC (Make/options files), which do
  not work well with the OSX LLVM cpp.
  It strips out the comments but also removes the continuation char.

STYLE: adjust notes about paraview library locations
2018-04-24 21:20:06 +02:00
Mark Olesen
b4d38ab468 ENH: improve handling of ThirdParty packages
- generalize some of the library extensions (.so vs .dylib).
  Provide as wmake 'sysFunctions'

- added note about unsupported/incomplete system support

- centralize detection of ThirdParty packages into wmake/ subdirectory
  by providing a series of scripts in the spirit of GNU autoconfig.
  For example,

      have_boost, have_readline, have_scotch, ...

  Each of the `have_<package>` scripts will generally provide the
  following type of functions:

      have_<package>          # detection
      no_<package>            # reset
      echo_<package>          # echoing

  and the following type of variables:

      HAVE_<package>          # unset or 'true'
      <package>_ARCH_PATH     # root for <package>
      <package>_INC_DIR       # include directory for <package>
      <package>_LIB_DIR       # library directory for <package>

  This simplifies the calling scripts:

      if have_metis
      then
          wmake metisDecomp
      fi

  As well as reducing clutter in the corresponding Make/options:

      EXE_INC = \
          -I$(METIS_INC_DIR) \
          -I../decompositionMethods/lnInclude

      LIB_LIBS = \
          -L$(METIS_LIB_DIR) -lmetis

  Any additional modifications (platform-specific or for an external build
  system) can now be made centrally.
2018-04-24 14:51:19 +02:00
Mark Olesen
b5c7e43c84 DEFEATURE: remove foamToTecplot360
- the API-versioned calls (eg, tecini142, teczne142, tecpoly142, tecend142),
  the limited availability of the SDK and lack of adequate testing make
  proper maintenance very difficult.
2018-04-19 14:51:33 +02:00
Mark Olesen
4cf932b230 STYLE: reorder/refactor stream format options
- IOstreamOption class to encapsulate format, compression, version.
  This is ordered to avoid internal padding in the structure, which
  reduces several bytes of memory overhead for stream objects
  and other things using this combination of data.

  Byte-sizes:
      old  IOstream:48  PstreamBuffers:88  Time:928
      new  IOstream:24  PstreamBuffers:72  Time:904

====

STYLE: remove support for deprecated uncompressed/compressed selectors

In older versions, the system/controlDict used these types of
specifications:

    writeCompression uncompressed;
    writeCompression compressed;

As of DEC-2009, these were deprecated in favour of using normal switch
names:

    writeCompression true;
    writeCompression false;
    writeCompression on;
    writeCompression off;

Now removed these deprecated names and treat like any other unknown
input and issue a warning. Eg,

   Unknown compression specifier 'compressed', assuming no compression

====

STYLE: provide Enum of stream format names (ascii, binary)

====

COMP: fixed incorrect IFstream construct in FIREMeshReader

- spurious bool argument (presumably meant as uncompressed) was being
  implicitly converted to a versionNumber. Now caught by making
  IOstreamOption::versionNumber constructor explicit.

- bad version specifier in changeDictionary
2018-04-12 20:32:20 +02:00
mattijs
af3f93c057 ENH: snappyHexMeshDict: changed 17x to 1.7.x 2018-04-18 11:32:59 +01:00
Andrew Heather
a230e8d408 STYLE: Correcting typos 2018-03-28 17:14:16 +01:00
Mark Olesen
428f746c68 STYLE: include temperature (T) in the default paraFoam pre-selection 2018-04-12 13:51:51 +02:00
Mark Olesen
5f88e4271e ENH: allow "<case>", "<system>" ... in the string expansions (issue #792)
- the expansions were previously required as slash to follow, but
  now either are possible.

    "<case>", "<case>/" both yield the same as "$FOAM_CASE" and
    will not have a trailing slash in the result. The expansion of
    "$FOAM_CASE/" will however have a trailing slash.

- adjust additional files using these expansions
2018-04-11 23:10:49 +02:00
Mark Olesen
fc5895f1df STYLE: rename toLabel, toLabelRange classes -> labelOp, labelRangeOp
- make purpose as functors _slightly_ clearer.

- base definition removed for stricter enforcement of the specialization
  requirement.
2018-04-11 22:48:03 +02:00
mattijs
d2b1b1cdc0 ENH: paraFoam: catch read errors. Fixes #798. 2018-04-12 15:12:04 +01:00
Mark Olesen
018124e3bf STYLE: use 'return nullptr' for empty autoPtr/tmp returns
- both autoPtr and tmp are defined with an implicit construct from
  nullptr (but with explicit construct from a pointer to null).
  Thus is it safe to use 'nullptr' when returning an empty autoPtr or tmp.
2018-03-21 09:31:09 +01:00
Mark Olesen
2f86cdc712 STYLE: more consistent use of dimensioned Zero
- when constructing dimensioned fields that are to be zero-initialized,
  it is preferrable to use a form such as

      dimensionedScalar(dims, Zero)
      dimensionedVector(dims, Zero)

  rather than

      dimensionedScalar("0", dims, 0)
      dimensionedVector("zero", dims, vector::zero)

  This reduces clutter and also avoids any suggestion that the name of
  the dimensioned quantity has any influence on the field's name.

  An even shorter version is possible. Eg,

      dimensionedScalar(dims)

  but reduces the clarity of meaning.

- NB: UniformDimensionedField is an exception to these style changes
  since it does use the name of the dimensioned type (instead of the
  regIOobject).
2018-03-16 10:24:03 +01:00
Mark Olesen
c0498e731a ENH: consolidate some common methods for paraview + catalyst 2018-04-03 18:42:35 +02:00
Robert
55d9eb206d STYLE: missing space in checkMesh (fixes #767) 2018-04-03 09:40:04 +02:00
Mark Olesen
5d008f7a18 ENH: improvements for PtrList, UPtrList and new PtrDynList container
- improve internal handling to permit deriving resizable containers
  (eg, PtrDynList).

- include '->' iterator dereferencing

- Only append/set non-const autoPtr references. This doesn't break
  existing code, but makes the intention more transparent.
2018-03-22 01:13:38 +01:00
Mark Olesen
36719bf55b STYLE: consistent lookupOrDefault template parameters
- in many cases can just use lookupOrDefault("key", bool) instead of
  lookupOrDefault<bool> or lookupOrDefault<Switch> since reading a
  bool from an Istream uses the Switch(Istream&) anyhow

STYLE: relocated Switch string names into file-local scope
2018-03-26 09:09:09 +02:00
mattijs
710117fe2b ENH: checkMesh: output cellRegion field. Fixes #763. 2018-03-21 11:41:57 +00:00
mattijs
46aac34956 ENH: snappyHexMeshDict: improved comment 2018-03-21 11:01:30 +00:00
Mark Olesen
d17bc72585 ENH: consistency of HashSet setMany(), insertMany() with packed-list version
- this also provides a better separation of the intent
  (ie, inserting a single value, or inserting multiply values)
2018-03-14 21:08:29 +01:00
Mark Olesen
5d1fb23555 ENH: code reduction in PackedList, PackedBoolList (issue #751)
- eliminate iterators from PackedList since they were unused, had
  lower performance than direct access and added unneeded complexity.

- eliminate auto-vivify for the PackedList '[] operator.
  The set() method provides any required auto-vivification and
  removing this ability from the '[]' operator allows for a lower
  when accessing the values. Replaced the previous cascade of iterators
  with simpler reference class.

PackedBoolList:

- (temporarily) eliminate logic and addition operators since
  these contained partially unclear semantics.

- the new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

- more consistent use of PackedBoolList test(), set(), unset() methods
  for fewer operation and clearer code. Eg,

      if (list.test(index)) ...    |  if (list[index]) ...
      if (!list.test(index)) ...   |  if (list[index] == 0u) ...
      list.set(index);             |  list[index] = 1u;
      list.unset(index);           |  list[index] = 0u;

- deleted the operator=(const labelUList&) and replaced with a setMany()
  method for more clarity about the intended operation and to avoid any
  potential inadvertent behaviour.
2018-03-13 08:32:40 +01:00
Mark Olesen
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
mattijs
239c96bf28 ENH: checkMesh: minTetVolume field. Fixes #763. 2018-03-12 09:29:17 +00:00
mattijs
69ebe127a8 ENH: shm: feature angle. See #699. 2018-03-08 15:14:42 +00:00
Mark Olesen
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
Mark Olesen
57291e8692 STYLE: use autoPtr::New and tmp::New for simple return types 2018-02-26 14:00:30 +01:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
bcabe827f6 ENH: dedicated HashSetOps, HashTableOps namespaces
- relocated HashSetPlusEqOp and HashTablePlusEqOp to
  HashSetOps::plusEqOp and HashTableOps::plusEqOp, respectively

- additional functions for converting between a labelHashSet
  and a PackedBoolList or List<bool>:

  From lists selections to labelHashSet indices:

      HashSetOps::used(const PackedBoolList&);
      HashSetOps::used(const UList<bool>&);

  From labelHashSet to list forms:

      PackedBoolList bitset(const labelHashSet&);
      List<bool> bools(const labelHashSet&);
2018-03-06 11:41:34 +01:00
Mark Olesen
15f7260884 ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList.
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
  and ListOps::UniqueEqOp, respectively for better code isolation and
  documentation of purpose.

- relocated setValues to ListOps::setValue() with many more
  alternative selectors possible

- relocated createWithValues to ListOps::createWithValue
  for better code isolation. The default initialization value is itself
  now a default parameter, which allow for less typing.

  Negative indices in the locations to set are now silently ignored,
  which makes it possible to use an oldToNew mapping that includes
  negative indices.

- additional ListOps::createWithValue taking a single position to set,
  available both in copy assign and move assign versions.
  Since a negative index is ignored, it is possible to combine with
  the output of List::find() etc.

STYLE: changes for PackedList

- code simplication in the PackedList iterators, including dropping
  the unused operator() on iterators, which is not available in plain
  list versions either.

- improved sizing for PackedBoolList creation from a labelUList.

ENH: additional List constructors, for handling single element list.

- can assist in reducing constructor ambiguity, but can also helps
  memory optimization when creating a single element list.
  For example,

    labelListList labels(one(), identity(mesh.nFaces()));
2018-03-01 14:12:51 +01:00
Mark Olesen
53ab527b45 ENH: added constexpr, noexcept for bool, Switch
- rationalized some method naming.
  Eg, c_str() instead of asText()
2018-03-03 20:32:49 +01:00
Mark Olesen
fa3acc9955 ENH: make CompactListList swapable and move construct/assignable 2018-01-26 12:19:48 +01:00
Mark Olesen
294a3d05ba BUG: problems converting clouds to ensight or vtk format (closes #708)
- problems when the cloud was not available on all processors.

- NB: ensight measured data only allows a single cloud, but
  foamToEnsight writes all clouds.
2018-01-23 15:39:45 +01:00
Mark Olesen
2ebcb74dd2 BUG: reconstructPar ignores writeLagrangianPositions (fixes #702)
- The central InfoSwitch "writeLagrangianPositions" allows writing an
  additional Lagrangian "positions" file, but these were not being
  written by reconstructPar. These are now also written in reconstructPar
  if the central writeLagrangianPositions InfoSwitch is enabled.

NOTES

- "positions" are reconstructed from the processors "coordinates" file

- decomposePar will not attempt to create or redistribute any
  "positions" files
2018-01-17 13:38:24 +01:00
Andrew Heather
23af7e435a ENH: FFT - removed power-of-2 constraint on number of samples 2017-12-29 23:57:22 +00:00
Andrew Heather
6f72f3452d BUG: foamToVTK - only convert finte area if -finiteAreaFields option is specified. Fixes #687 2017-12-29 23:50:10 +00:00
mattijs
abb332df6d BUG: surfaceRedistributePar: hang in collated. See #686. 2017-12-28 12:45:49 +00:00
Will Bainbridge
13d893e4c0 ENH: blockMesh: Always put the mesh in the constant directory 2017-12-19 09:58:51 +00:00
mattijs
52231e7836 ENH: snappyHexMesh: updated directional refinement 2017-12-13 12:27:25 +00:00
mattijs
88fac3ed9f ENH: snappyHexMesh: initial version of directional refinement 2017-12-11 17:23:33 +00:00
Henry Weller
5ea75f8a95 ENH: blockMesh: Added support for automatically reordering cyclic patches
Patch contributed by Mattijs Janssens
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1692
2017-12-01 11:01:30 +00:00
Mark Olesen
37e248c74b STYLE: consistent use of wordHashSet instead of HashSet<word>
- the wordHashSet typedef is always available when HashSet has been
  included.

- use default HashTable key (word) instead of explicitly mentioning it
2018-02-22 11:19:47 +01:00
Mark Olesen
ec38e7a408 ENH: prevent conversion of string to regExp in stringListOps (closes #739)
* For most cases, this conversion would be largely unintentional
  and also less efficient. If the regex is desirable, the caller
  should invoke it explicitly.
  For example,

      findStrings(regExp(str), listOfStrings);

  Or use one of the keyType, wordRe, wordRes variants instead.
  If string is to be used as a plain (non-regex) matcher,
  this can be directly invoked

      findMatchingStrings(str, listOfStrings);

  or using the ListOps instead:

      findIndices(listOfStrings, str);

* provide function interfaces for keyType.
2018-02-22 09:28:03 +01:00
Mark Olesen
f959927910 ENH: improve consistency of ListOps and stringListOps
- subsetList, inplaceSubsetList with optional inverted logic.

- use moveable elements where possible.

- allow optional starting offset for the identity global function.
  Eg,  'identity(10, start)' vs 'identity(10) + start'
2018-02-21 12:58:00 +01:00
Mark Olesen
3ee2f3293e STYLE: avoid global findIndex() in favour of UList::find() 2018-02-21 11:50:34 +01:00
Mark Olesen
c126464d1c ENH: change wordRes to be a List of wordRe instead of a wrapper (issue #259)
- this permits direct storage of a list with additional matcher
  capabilities

- provide wordRes::matcher class for similar behaviour as previously
2018-02-21 10:05:30 +01:00
Mark Olesen
87b1bbacd8 ENH: support writeLagrangianPositions in redistributePar (issue #702) 2018-02-20 15:22:47 +01:00
Mark Olesen
cbbb9753eb STYLE: consolidate positionsCompat1706 structure (issue #721) 2018-02-19 11:57:57 +01:00
mattijs
8033592eb1 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2018-02-14 10:17:32 +00:00
mattijs
ad3d5020f7 ENH: foamDictionary. Added comment. Fixes #316. 2018-02-14 10:17:13 +00:00
Mark Olesen
09a6e94073 BUG: incorrect HashTable / HashSet instances
- Eg instead of using labelHashSet, used HashSet<label> which uses
  the string::hash for hashing. Other places inadvertently using the
  string::hash instead of Hash<label> for hashing.

STYLE: use Map<..> instead of HashTable<.., label, Hash<label>>

- reduces clutter
2018-02-09 09:30:02 +01:00
Mark Olesen
806b668418 STYLE: two-parameter Foam::name replaced by word::printf (issue #724)
- reduces some ambiguity and clarifies the expected output and
  behaviour.

STYLE: reduce some automatic conversions of char to string
2018-02-08 12:00:54 +01:00
Mark Olesen
e42c228155 ENH: cleanup List constructors (issue #725)
- add copy construct from UList

- remove copy construct from dissimilar types.

  This templated constructor was too generous in what it accepted.
  For the special cases where a copy constructor is required with
  a change in the data type, now use the createList factory method,
  which accepts a unary operator. Eg,

      auto scalars = scalarList::createList
      (
          labels,
          [](const label& val){ return 1.5*val; }
      );
2018-02-08 08:53:14 +01:00
Mark Olesen
e2332d6bd2 COMP: better handling of versioned cmake libraries
- sentinel was not working properly when building user-space routines
2018-01-31 08:35:56 +01:00
Mark Olesen
1b9aec2a3d CONP: suppress register warnings for clang only 2018-01-30 06:49:32 +01:00
Mark Olesen
e13f8a38a9 COMP: suppress warning about deprecated register keyword (Flex) 2018-01-29 09:13:28 +01:00