Commit Graph

186 Commits

Author SHA1 Message Date
Mattijs Janssens
46dbfabd9d ENH: primitiveMesh: make geometry calculation runtime selectable
This adds a 'geometry' scheme section to the system/fvSchemes:

geometry
{
    type            highAspectRatio;
}

These 'fvGeometryMethod's are used to calculate
- deltaCoeffs
- nonOrthoCoeffs
etc and can even modify the basic face/cellCentres calculation.
2020-12-11 10:31:34 +00:00
Mark Olesen
b966b7cd4b ENH: static test methods for matching simple cell shapes
- (tet, pyr, hex) can be identified from their number of faces
  and vertices. For these common shapes can use static `test()`
  method instead of the virtual isA() method.

  This is much cheaper for calling on an individual basis since
  it avoids the overhead of constructing an object.

ENH: tetCell edge/reverseEdge (already had tetEdge)
2020-12-08 11:58:27 +01:00
Mark Olesen
5dc5ea928a ENH: add UPstream::subProcs() static method
- returns a range of `int` values that can be iterated across.
  For example,

      for (const int proci : Pstream::subProcs()) { ... }

  instead of

      for
      (
          int proci = Pstream::firstSlave();
          proci <= Pstream::lastSlave();
          ++proci
      )
      {
          ...
      }
2020-09-28 14:26:07 +02:00
Mark Olesen
d5884c8d85 STYLE: use HashSet xor instead of two operations (faceZoneSet)
STYLE: use global operator instead of HashSet -= operator
2020-07-27 09:47:33 +02:00
mattijs
bcda061f54 ENH: checkMesh: improved checking on writeFields. Fixes #1786. 2020-07-23 17:26:09 +01:00
Mark Olesen
12c91b9472 STYLE: check autoPtr as plain bool instead of valid()
- cleaner code, more similarity with unique_ptr

  Now
      if (ptr)
      if (!ptr)

  instead
      if (ptr.valid())
      if (!ptr.valid())
2020-07-16 11:39:24 +02:00
Mark Olesen
9af3f85cf9 STYLE: simplify short-circuit involving autoPtr (#1775)
- with '&&' conditions, often better to check for non-null autoPtr
  first (it is cheap)

- check as bool instead of valid() method for cleaner code, especially
  when the wrapped item itself has a valid/empty or good.
  Also when handling multiple checks.

  Now
      if (ptr && ptr->valid())
      if (ptr1 || ptr2)

  instead
      if (ptr.valid() && ptr->valid())
      if (ptr1.valid() || ptr2.valid())
2020-07-16 10:17:25 +02:00
mattijs
331e86cf17 BUG: checkMesh: index into surfaceScalarField. Fixes #1771. 2020-07-13 13:00:13 +01:00
Mark Olesen
31b172217c ENH: support predicate checks for argList (similar to dictionary methods)
- Favour use of argList methods that are more similar to dictionary
  method names with the aim of reducing the cognitive load.

  * Silently deprecate two-parameter get() method in favour of the
    more familiar getOrDefault.
  * Silently deprecate opt() method in favour of get()

  These may be verbosely deprecated in future versions.
2020-06-02 13:51:18 +02:00
mattijs
01c14532bd ENH: checkMesh: write cellZone, faceZone info. See #1543. 2020-02-06 12:36:26 +00:00
mattijs
0fc4b79dde ENH: checkMesh: write minPyrVol. Fixes #1543. 2020-01-06 13:59:16 +00:00
mattijs
28eb349a30 BUG: checkMesh: handling of unsorted points. Fixes #920. 2020-01-06 11:22:34 +00:00
Mark Olesen
1310e85225 ENH: support 'get()' for retrieving argList options
- previously only had 'opt<..>()' for options, but 'get<..>()'
  provides more similarity with dictionary methods.
  The 'opt<..>()' method is retained.
2019-11-26 21:07:11 +01:00
Andrew Heather
fdf8d10ab4 Merge commit 'e9219558d7' into develop-v1906 2019-12-05 11:47:19 +00:00
OpenFOAM bot
e9219558d7 GIT: Header file updates 2019-10-31 14:48:44 +00:00
mattijs
61dfa9b544 ENH: checkMesh: do not create wallDist unless in fvSchemes. See #71 2019-09-19 14:37:38 +01:00
mattijs
1307836caa ENH: checkMesh: write wall distance. See #71 2019-09-02 12:40:22 +01:00
Mark Olesen
dade6957c8 ENH: checkMesh report num global patches and min-max 2019-08-19 14:11:31 +02:00
Mark Olesen
beefee48d4 COMP: adjust compilation order with updated interdependencies
- Eg, with surface writers now in surfMesh, there are fewer libraries
  depending on conversion and sampling.

COMP: regularize linkage ordering and avoid some implicit linkage (#1238)
2019-04-28 14:44:33 +02:00
Mark Olesen
773ec00d4b ENH: improved consistency of surface writers (#1232)
- remove writeGeometry() in favour of write() and make it pure virtual
  so that all writers must explicitly deal with it.

- establish proxy extension at construction time and treated as an
  invariant thereafter. This avoids potentially surprising changes in
  behaviour when writing.
2019-03-11 15:09:03 +01:00
Mark Olesen
181c974b11 ENH: improved sample surfaces and surface writers (#1206)
- The writers have changed from being a generic state-less set of
  routines to more properly conforming to the normal notion of a writer.
  These changes allow us to combine output fields (eg, in a single
  VTK/vtp file for each timestep).

  Parallel data reduction and any associated bookkeeping is now part
  of the surface writers.
  This improves their re-usability and avoids unnecessary
  and premature data reduction at the sampling stage.

  It is now possible to have different output formats on a per-surface
  basis.

- A new feature of the surface sampling is the ability to "store" the
  sampled surfaces and fields onto a registry for reuse by other
  function objects.

  Additionally, the "store" can be triggered at the execution phase
  as well
2019-02-07 18:11:34 +01:00
Mark Olesen
60234ab007 STYLE: reduced nesting on return branching 2019-02-13 08:06:36 +01:00
OpenFOAM bot
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
mattijs
14e6b198cc ENH: checkMesh: write correct faceWeights. Fixes #1099. 2019-01-31 15:28:01 +00:00
Mark Olesen
f498d09dbf ENH: add simplified gather methods for globalIndex with default communicator
- when combining lists in processor order this simplifies code and
  reduces memory overhead.

  Write this:
    ----
    labelList collected;

    const globalIndex sizing(input.size());
    sizing.gather(input, collected);
    ----

  OR

    ----
    labelList collected;
    globalIndex::gatherOp(input, collected);
    ----

  Instead of this:

    ----
    labelList collected;

    List<labelList> scratch(Pstream::nProcs());
    scratch[Pstream::myProcNo()] = input;
    Pstream::gatherList(scratch);

    if (Pstream::master())
    {
        collected = ListListOps::combine<labelList>
        (
            scratch,
            accessOp<labelList>()
        );
    }
    scratch.clear();
    ----
2019-01-16 21:33:06 +01:00
Mark Olesen
14a404170b ENH: for-range, forAllIters() ... in applications/utilities
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
Mark Olesen
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
Mark Olesen
29a5793b5b STYLE: argList::opt method instead of the longer argList::lookupOrDefault
- also replaced a few instances of readIfPresent with opt<> for
  constant values.
2018-12-12 12:10:39 +01:00
Mark Olesen
68ec561df8 STYLE: add usage notes to more utilities and solvers 2018-12-11 15:25:27 +01:00
Mark Olesen
fc2f2e74d2 BUG: checkMesh, moveDynamicMesh checks not in postProcessing/ (fixes #1104)
- now placed under postProcessing/checkMesh and postProcessing/checkAMI,
  respectively.

  Output files are now also tagged with the id of the patch, in case
  there are multiple AMI patches in use.
2018-12-05 22:03:28 +01:00
Mark Olesen
f5baa9a583 ENH: extend globalIndex toGlobal methods
- now applicable to labelLists.

Note:
  in some situations it will be more efficient to use
  Foam::identity() directly. Eg,

     globalIndex globalCells(mesh.nCells());
     ...
     labelList cellIds
     (
         identity(globalCells.localSize(), globalCells.localStart())
     );
2018-11-05 16:23:33 +01:00
mattijs
f2ef995113 ENH: checkMesh: pass by reference. See #755. 2018-10-29 15:08:52 +00:00
Mark Olesen
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
Mark Olesen
ca5d91239d STYLE: use edgeHashes include
STYLE: use initial hash size 128 instead of 100 in a few places
2018-08-08 23:54:27 +02:00
mattijs
70801d7f48 ENH: checkMesh: output mask field. Fixes #958. 2018-08-01 13:02:07 +01:00
Mark Olesen
cb919a6c41 ENH: tag some options as 'advanced' (only shown with -help-full)
General:
    * -roots, -hostRoots, -fileHandler

Specific:
    * -to <coordinateSystem> -from <coordinateSystem>

- Display -help-compat when compatibility or ignored options are available

STYLE: capitalization of options text
2018-07-31 11:54:15 +02:00
Mark Olesen
0304911921 STYLE: more consistent use of dimensioned Zero, scalar decimal points
- use scalar(0) instead of scalar(0.0) etc
2018-07-13 10:28:48 +02:00
mattijs
989ee54bb1 ENH: checkMesh: output volume of cellZone. Fixes #727. 2018-07-04 12:08:24 +01:00
Andrew Heather
aec949d7cc ENH: Consistency improvement for setting postProcessing directory name 2018-02-27 14:37:05 +00:00
Mark Olesen
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
Mark Olesen
fc5895f1df STYLE: rename toLabel, toLabelRange classes -> labelOp, labelRangeOp
- make purpose as functors _slightly_ clearer.

- base definition removed for stricter enforcement of the specialization
  requirement.
2018-04-11 22:48:03 +02:00
Mark Olesen
2f86cdc712 STYLE: more consistent use of dimensioned Zero
- when constructing dimensioned fields that are to be zero-initialized,
  it is preferrable to use a form such as

      dimensionedScalar(dims, Zero)
      dimensionedVector(dims, Zero)

  rather than

      dimensionedScalar("0", dims, 0)
      dimensionedVector("zero", dims, vector::zero)

  This reduces clutter and also avoids any suggestion that the name of
  the dimensioned quantity has any influence on the field's name.

  An even shorter version is possible. Eg,

      dimensionedScalar(dims)

  but reduces the clarity of meaning.

- NB: UniformDimensionedField is an exception to these style changes
  since it does use the name of the dimensioned type (instead of the
  regIOobject).
2018-03-16 10:24:03 +01:00
Robert
55d9eb206d STYLE: missing space in checkMesh (fixes #767) 2018-04-03 09:40:04 +02:00
mattijs
710117fe2b ENH: checkMesh: output cellRegion field. Fixes #763. 2018-03-21 11:41:57 +00:00
Mark Olesen
5d1fb23555 ENH: code reduction in PackedList, PackedBoolList (issue #751)
- eliminate iterators from PackedList since they were unused, had
  lower performance than direct access and added unneeded complexity.

- eliminate auto-vivify for the PackedList '[] operator.
  The set() method provides any required auto-vivification and
  removing this ability from the '[]' operator allows for a lower
  when accessing the values. Replaced the previous cascade of iterators
  with simpler reference class.

PackedBoolList:

- (temporarily) eliminate logic and addition operators since
  these contained partially unclear semantics.

- the new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

- more consistent use of PackedBoolList test(), set(), unset() methods
  for fewer operation and clearer code. Eg,

      if (list.test(index)) ...    |  if (list[index]) ...
      if (!list.test(index)) ...   |  if (list[index] == 0u) ...
      list.set(index);             |  list[index] = 1u;
      list.unset(index);           |  list[index] = 0u;

- deleted the operator=(const labelUList&) and replaced with a setMany()
  method for more clarity about the intended operation and to avoid any
  potential inadvertent behaviour.
2018-03-13 08:32:40 +01:00
mattijs
239c96bf28 ENH: checkMesh: minTetVolume field. Fixes #763. 2018-03-12 09:29:17 +00:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
15f7260884 ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList.
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
  and ListOps::UniqueEqOp, respectively for better code isolation and
  documentation of purpose.

- relocated setValues to ListOps::setValue() with many more
  alternative selectors possible

- relocated createWithValues to ListOps::createWithValue
  for better code isolation. The default initialization value is itself
  now a default parameter, which allow for less typing.

  Negative indices in the locations to set are now silently ignored,
  which makes it possible to use an oldToNew mapping that includes
  negative indices.

- additional ListOps::createWithValue taking a single position to set,
  available both in copy assign and move assign versions.
  Since a negative index is ignored, it is possible to combine with
  the output of List::find() etc.

STYLE: changes for PackedList

- code simplication in the PackedList iterators, including dropping
  the unused operator() on iterators, which is not available in plain
  list versions either.

- improved sizing for PackedBoolList creation from a labelUList.

ENH: additional List constructors, for handling single element list.

- can assist in reducing constructor ambiguity, but can also helps
  memory optimization when creating a single element list.
  For example,

    labelListList labels(one(), identity(mesh.nFaces()));
2018-03-01 14:12:51 +01:00
Mark Olesen
37e248c74b STYLE: consistent use of wordHashSet instead of HashSet<word>
- the wordHashSet typedef is always available when HashSet has been
  included.

- use default HashTable key (word) instead of explicitly mentioning it
2018-02-22 11:19:47 +01:00
Mark Olesen
e42c228155 ENH: cleanup List constructors (issue #725)
- add copy construct from UList

- remove copy construct from dissimilar types.

  This templated constructor was too generous in what it accepted.
  For the special cases where a copy constructor is required with
  a change in the data type, now use the createList factory method,
  which accepts a unary operator. Eg,

      auto scalars = scalarList::createList
      (
          labels,
          [](const label& val){ return 1.5*val; }
      );
2018-02-08 08:53:14 +01:00