fc2f2e74d2
- now placed under postProcessing/checkMesh and postProcessing/checkAMI, respectively. Output files are now also tagged with the id of the patch, in case there are multiple AMI patches in use.
498 lines
13 KiB
C
498 lines
13 KiB
C
/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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\\ / O peration |
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\\ / A nd | Copyright (C) 2015-2017 OpenFOAM Foundation
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\\/ M anipulation | Copyright (C) 2015-2018 OpenCFD Ltd.
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-------------------------------------------------------------------------------
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License
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This file is part of OpenFOAM.
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OpenFOAM is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
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ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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for more details.
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You should have received a copy of the GNU General Public License
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along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
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\*---------------------------------------------------------------------------*/
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#include "checkTools.H"
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#include "polyMesh.H"
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#include "globalMeshData.H"
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#include "hexMatcher.H"
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#include "wedgeMatcher.H"
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#include "prismMatcher.H"
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#include "pyrMatcher.H"
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#include "tetWedgeMatcher.H"
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#include "tetMatcher.H"
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#include "IOmanip.H"
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#include "pointSet.H"
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#include "faceSet.H"
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#include "cellSet.H"
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#include "Time.H"
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#include "surfaceWriter.H"
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#include "syncTools.H"
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#include "globalIndex.H"
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#include "PatchTools.H"
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#include "functionObject.H"
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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void Foam::printMeshStats(const polyMesh& mesh, const bool allTopology)
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{
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Info<< "Mesh stats" << nl
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<< " points: "
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<< returnReduce(mesh.points().size(), sumOp<label>()) << nl;
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label nInternalPoints = returnReduce
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(
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mesh.nInternalPoints(),
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sumOp<label>()
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);
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if (nInternalPoints != -Pstream::nProcs())
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{
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Info<< " internal points: " << nInternalPoints << nl;
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if (returnReduce(mesh.nInternalPoints(), minOp<label>()) == -1)
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{
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WarningInFunction
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<< "Some processors have their points sorted into internal"
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<< " and external and some do not." << endl
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<< "This can cause problems later on." << endl;
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}
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}
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if (allTopology && nInternalPoints != -Pstream::nProcs())
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{
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label nEdges = returnReduce(mesh.nEdges(), sumOp<label>());
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label nInternalEdges = returnReduce
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(
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mesh.nInternalEdges(),
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sumOp<label>()
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);
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label nInternal1Edges = returnReduce
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(
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mesh.nInternal1Edges(),
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sumOp<label>()
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);
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label nInternal0Edges = returnReduce
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(
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mesh.nInternal0Edges(),
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sumOp<label>()
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);
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Info<< " edges: " << nEdges << nl
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<< " internal edges: " << nInternalEdges << nl
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<< " internal edges using one boundary point: "
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<< nInternal1Edges-nInternal0Edges << nl
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<< " internal edges using two boundary points: "
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<< nInternalEdges-nInternal1Edges << nl;
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}
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label nFaces = returnReduce(mesh.faces().size(), sumOp<label>());
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label nIntFaces = returnReduce(mesh.faceNeighbour().size(), sumOp<label>());
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label nCells = returnReduce(mesh.cells().size(), sumOp<label>());
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Info<< " faces: " << nFaces << nl
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<< " internal faces: " << nIntFaces << nl
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<< " cells: " << nCells << nl
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<< " faces per cell: "
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<< (scalar(nFaces) + scalar(nIntFaces))/max(1, nCells) << nl
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<< " boundary patches: " << mesh.boundaryMesh().size() << nl
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<< " point zones: " << mesh.pointZones().size() << nl
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<< " face zones: " << mesh.faceZones().size() << nl
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<< " cell zones: " << mesh.cellZones().size() << nl
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<< endl;
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// Construct shape recognizers
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hexMatcher hex;
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prismMatcher prism;
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wedgeMatcher wedge;
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pyrMatcher pyr;
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tetWedgeMatcher tetWedge;
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tetMatcher tet;
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// Counters for different cell types
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label nHex = 0;
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label nWedge = 0;
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label nPrism = 0;
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label nPyr = 0;
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label nTet = 0;
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label nTetWedge = 0;
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label nUnknown = 0;
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Map<label> polyhedralFaces;
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for (label celli = 0; celli < mesh.nCells(); celli++)
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{
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if (hex.isA(mesh, celli))
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{
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nHex++;
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}
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else if (tet.isA(mesh, celli))
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{
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nTet++;
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}
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else if (pyr.isA(mesh, celli))
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{
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nPyr++;
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}
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else if (prism.isA(mesh, celli))
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{
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nPrism++;
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}
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else if (wedge.isA(mesh, celli))
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{
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nWedge++;
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}
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else if (tetWedge.isA(mesh, celli))
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{
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nTetWedge++;
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}
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else
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{
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nUnknown++;
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polyhedralFaces(mesh.cells()[celli].size())++;
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}
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}
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reduce(nHex,sumOp<label>());
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reduce(nPrism,sumOp<label>());
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reduce(nWedge,sumOp<label>());
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reduce(nPyr,sumOp<label>());
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reduce(nTetWedge,sumOp<label>());
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reduce(nTet,sumOp<label>());
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reduce(nUnknown,sumOp<label>());
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Info<< "Overall number of cells of each type:" << nl
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<< " hexahedra: " << nHex << nl
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<< " prisms: " << nPrism << nl
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<< " wedges: " << nWedge << nl
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<< " pyramids: " << nPyr << nl
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<< " tet wedges: " << nTetWedge << nl
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<< " tetrahedra: " << nTet << nl
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<< " polyhedra: " << nUnknown
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<< endl;
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if (nUnknown > 0)
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{
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Pstream::mapCombineGather(polyhedralFaces, plusEqOp<label>());
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Info<< " Breakdown of polyhedra by number of faces:" << nl
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<< " faces" << " number of cells" << endl;
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const labelList sortedKeys = polyhedralFaces.sortedToc();
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forAll(sortedKeys, keyi)
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{
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const label nFaces = sortedKeys[keyi];
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Info<< setf(std::ios::right) << setw(13)
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<< nFaces << " " << polyhedralFaces[nFaces] << nl;
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}
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}
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Info<< endl;
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}
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void Foam::mergeAndWrite
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(
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const polyMesh& mesh,
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const surfaceWriter& writer,
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const word& name,
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const indirectPrimitivePatch& setPatch,
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const fileName& outputDir
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)
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{
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if (Pstream::parRun())
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{
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labelList pointToGlobal;
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labelList uniqueMeshPointLabels;
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autoPtr<globalIndex> globalPoints;
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autoPtr<globalIndex> globalFaces;
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faceList mergedFaces;
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pointField mergedPoints;
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Foam::PatchTools::gatherAndMerge
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(
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mesh,
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setPatch.localFaces(),
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setPatch.meshPoints(),
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setPatch.meshPointMap(),
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pointToGlobal,
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uniqueMeshPointLabels,
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globalPoints,
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globalFaces,
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mergedFaces,
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mergedPoints
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);
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// Write
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if (Pstream::master())
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{
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writer.write
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(
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outputDir,
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name,
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meshedSurfRef
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(
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mergedPoints,
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mergedFaces
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)
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);
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}
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}
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else
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{
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writer.write
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(
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outputDir,
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name,
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meshedSurfRef
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(
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setPatch.localPoints(),
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setPatch.localFaces()
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)
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);
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}
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}
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void Foam::mergeAndWrite
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(
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const surfaceWriter& writer,
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const faceSet& set
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)
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{
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const polyMesh& mesh = refCast<const polyMesh>(set.db());
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const indirectPrimitivePatch setPatch
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(
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IndirectList<face>(mesh.faces(), set.sortedToc()),
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mesh.points()
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);
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fileName outputDir
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(
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set.time().globalPath()
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/ functionObject::outputPrefix
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/ mesh.pointsInstance()
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/ set.name()
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);
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outputDir.clean();
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mergeAndWrite(mesh, writer, set.name(), setPatch, outputDir);
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}
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void Foam::mergeAndWrite
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(
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const surfaceWriter& writer,
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const cellSet& set
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)
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{
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const polyMesh& mesh = refCast<const polyMesh>(set.db());
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const polyBoundaryMesh& pbm = mesh.boundaryMesh();
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// Determine faces on outside of cellSet
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bitSet isInSet(mesh.nCells());
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forAllConstIter(cellSet, set, iter)
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{
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isInSet.set(iter.key());
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}
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boolList bndInSet(mesh.nBoundaryFaces());
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forAll(pbm, patchi)
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{
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const polyPatch& pp = pbm[patchi];
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const labelList& fc = pp.faceCells();
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forAll(fc, i)
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{
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bndInSet[pp.start()+i-mesh.nInternalFaces()] = isInSet[fc[i]];
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}
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}
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syncTools::swapBoundaryFaceList(mesh, bndInSet);
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DynamicList<label> outsideFaces(3*set.size());
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for (label facei = 0; facei < mesh.nInternalFaces(); facei++)
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{
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const bool ownVal = isInSet[mesh.faceOwner()[facei]];
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const bool neiVal = isInSet[mesh.faceNeighbour()[facei]];
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if (ownVal != neiVal)
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{
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outsideFaces.append(facei);
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}
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}
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forAll(pbm, patchi)
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{
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const polyPatch& pp = pbm[patchi];
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const labelList& fc = pp.faceCells();
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if (pp.coupled())
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{
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forAll(fc, i)
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{
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label facei = pp.start()+i;
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const bool neiVal = bndInSet[facei-mesh.nInternalFaces()];
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if (isInSet[fc[i]] && !neiVal)
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{
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outsideFaces.append(facei);
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}
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}
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}
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else
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{
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forAll(fc, i)
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{
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if (isInSet[fc[i]])
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{
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outsideFaces.append(pp.start()+i);
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}
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}
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}
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}
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const indirectPrimitivePatch setPatch
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(
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IndirectList<face>(mesh.faces(), outsideFaces),
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mesh.points()
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);
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fileName outputDir
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(
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set.time().globalPath()
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/ functionObject::outputPrefix
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/ mesh.pointsInstance()
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/ set.name()
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);
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outputDir.clean();
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mergeAndWrite(mesh, writer, set.name(), setPatch, outputDir);
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}
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void Foam::mergeAndWrite
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(
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const writer<scalar>& writer,
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const pointSet& set
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)
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{
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const polyMesh& mesh = refCast<const polyMesh>(set.db());
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pointField mergedPts;
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labelList mergedIDs;
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if (Pstream::parRun())
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{
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// Note: we explicitly do not merge the points
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// (mesh.globalData().mergePoints etc) since this might
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// hide any synchronisation problem
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globalIndex globalNumbering(mesh.nPoints());
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mergedPts.setSize(returnReduce(set.size(), sumOp<label>()));
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mergedIDs.setSize(mergedPts.size());
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labelList setPointIDs(set.sortedToc());
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// Get renumbered local data
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pointField myPoints(mesh.points(), setPointIDs);
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labelList myIDs(globalNumbering.toGlobal(setPointIDs));
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if (Pstream::master())
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{
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// Insert master data first
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label pOffset = 0;
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SubList<point>(mergedPts, myPoints.size(), pOffset) = myPoints;
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SubList<label>(mergedIDs, myIDs.size(), pOffset) = myIDs;
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pOffset += myPoints.size();
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// Receive slave ones
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for (int slave=1; slave<Pstream::nProcs(); slave++)
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{
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IPstream fromSlave(Pstream::commsTypes::scheduled, slave);
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pointField slavePts(fromSlave);
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labelList slaveIDs(fromSlave);
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SubList<point>(mergedPts, slavePts.size(), pOffset) = slavePts;
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SubList<label>(mergedIDs, slaveIDs.size(), pOffset) = slaveIDs;
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pOffset += slaveIDs.size();
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}
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}
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else
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{
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// Construct processor stream with estimate of size. Could
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// be improved.
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OPstream toMaster
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(
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Pstream::commsTypes::scheduled,
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Pstream::masterNo(),
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myPoints.byteSize() + myIDs.byteSize()
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);
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toMaster << myPoints << myIDs;
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}
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}
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else
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{
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mergedIDs = set.sortedToc();
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mergedPts = pointField(mesh.points(), mergedIDs);
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}
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// Write with scalar pointID
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if (Pstream::master())
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{
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scalarField scalarPointIDs(mergedIDs.size());
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forAll(mergedIDs, i)
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{
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scalarPointIDs[i] = 1.0*mergedIDs[i];
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}
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coordSet points(set.name(), "distance", mergedPts, mag(mergedPts));
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List<const scalarField*> flds(1, &scalarPointIDs);
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wordList fldNames(1, "pointID");
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// Output e.g. pointSet p0 to
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// postProcessing/<time>/p0.vtk
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fileName outputDir
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(
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set.time().globalPath()
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/ functionObject::outputPrefix
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/ mesh.pointsInstance()
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// set.name()
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);
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outputDir.clean();
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mkDir(outputDir);
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fileName outputFile(outputDir/writer.getFileName(points, wordList()));
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//fileName outputFile(outputDir/set.name());
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OFstream os(outputFile);
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writer.write(points, fldNames, flds, os);
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}
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}
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// ************************************************************************* //
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