Commit Graph

1838 Commits

Author SHA1 Message Date
Mark Olesen
018124e3bf STYLE: use 'return nullptr' for empty autoPtr/tmp returns
- both autoPtr and tmp are defined with an implicit construct from
  nullptr (but with explicit construct from a pointer to null).
  Thus is it safe to use 'nullptr' when returning an empty autoPtr or tmp.
2018-03-21 09:31:09 +01:00
Mark Olesen
2f86cdc712 STYLE: more consistent use of dimensioned Zero
- when constructing dimensioned fields that are to be zero-initialized,
  it is preferrable to use a form such as

      dimensionedScalar(dims, Zero)
      dimensionedVector(dims, Zero)

  rather than

      dimensionedScalar("0", dims, 0)
      dimensionedVector("zero", dims, vector::zero)

  This reduces clutter and also avoids any suggestion that the name of
  the dimensioned quantity has any influence on the field's name.

  An even shorter version is possible. Eg,

      dimensionedScalar(dims)

  but reduces the clarity of meaning.

- NB: UniformDimensionedField is an exception to these style changes
  since it does use the name of the dimensioned type (instead of the
  regIOobject).
2018-03-16 10:24:03 +01:00
Robert
55d9eb206d STYLE: missing space in checkMesh (fixes #767) 2018-04-03 09:40:04 +02:00
Mark Olesen
5d008f7a18 ENH: improvements for PtrList, UPtrList and new PtrDynList container
- improve internal handling to permit deriving resizable containers
  (eg, PtrDynList).

- include '->' iterator dereferencing

- Only append/set non-const autoPtr references. This doesn't break
  existing code, but makes the intention more transparent.
2018-03-22 01:13:38 +01:00
Mark Olesen
36719bf55b STYLE: consistent lookupOrDefault template parameters
- in many cases can just use lookupOrDefault("key", bool) instead of
  lookupOrDefault<bool> or lookupOrDefault<Switch> since reading a
  bool from an Istream uses the Switch(Istream&) anyhow

STYLE: relocated Switch string names into file-local scope
2018-03-26 09:09:09 +02:00
mattijs
710117fe2b ENH: checkMesh: output cellRegion field. Fixes #763. 2018-03-21 11:41:57 +00:00
mattijs
46aac34956 ENH: snappyHexMeshDict: improved comment 2018-03-21 11:01:30 +00:00
Mark Olesen
d17bc72585 ENH: consistency of HashSet setMany(), insertMany() with packed-list version
- this also provides a better separation of the intent
  (ie, inserting a single value, or inserting multiply values)
2018-03-14 21:08:29 +01:00
Mark Olesen
5d1fb23555 ENH: code reduction in PackedList, PackedBoolList (issue #751)
- eliminate iterators from PackedList since they were unused, had
  lower performance than direct access and added unneeded complexity.

- eliminate auto-vivify for the PackedList '[] operator.
  The set() method provides any required auto-vivification and
  removing this ability from the '[]' operator allows for a lower
  when accessing the values. Replaced the previous cascade of iterators
  with simpler reference class.

PackedBoolList:

- (temporarily) eliminate logic and addition operators since
  these contained partially unclear semantics.

- the new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

- more consistent use of PackedBoolList test(), set(), unset() methods
  for fewer operation and clearer code. Eg,

      if (list.test(index)) ...    |  if (list[index]) ...
      if (!list.test(index)) ...   |  if (list[index] == 0u) ...
      list.set(index);             |  list[index] = 1u;
      list.unset(index);           |  list[index] = 0u;

- deleted the operator=(const labelUList&) and replaced with a setMany()
  method for more clarity about the intended operation and to avoid any
  potential inadvertent behaviour.
2018-03-13 08:32:40 +01:00
Mark Olesen
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
mattijs
239c96bf28 ENH: checkMesh: minTetVolume field. Fixes #763. 2018-03-12 09:29:17 +00:00
mattijs
69ebe127a8 ENH: shm: feature angle. See #699. 2018-03-08 15:14:42 +00:00
Mark Olesen
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
Mark Olesen
57291e8692 STYLE: use autoPtr::New and tmp::New for simple return types 2018-02-26 14:00:30 +01:00
Mark Olesen
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
Mark Olesen
15f7260884 ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList.
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
  and ListOps::UniqueEqOp, respectively for better code isolation and
  documentation of purpose.

- relocated setValues to ListOps::setValue() with many more
  alternative selectors possible

- relocated createWithValues to ListOps::createWithValue
  for better code isolation. The default initialization value is itself
  now a default parameter, which allow for less typing.

  Negative indices in the locations to set are now silently ignored,
  which makes it possible to use an oldToNew mapping that includes
  negative indices.

- additional ListOps::createWithValue taking a single position to set,
  available both in copy assign and move assign versions.
  Since a negative index is ignored, it is possible to combine with
  the output of List::find() etc.

STYLE: changes for PackedList

- code simplication in the PackedList iterators, including dropping
  the unused operator() on iterators, which is not available in plain
  list versions either.

- improved sizing for PackedBoolList creation from a labelUList.

ENH: additional List constructors, for handling single element list.

- can assist in reducing constructor ambiguity, but can also helps
  memory optimization when creating a single element list.
  For example,

    labelListList labels(one(), identity(mesh.nFaces()));
2018-03-01 14:12:51 +01:00
Mark Olesen
53ab527b45 ENH: added constexpr, noexcept for bool, Switch
- rationalized some method naming.
  Eg, c_str() instead of asText()
2018-03-03 20:32:49 +01:00
Mark Olesen
37e248c74b STYLE: consistent use of wordHashSet instead of HashSet<word>
- the wordHashSet typedef is always available when HashSet has been
  included.

- use default HashTable key (word) instead of explicitly mentioning it
2018-02-22 11:19:47 +01:00
Mark Olesen
c126464d1c ENH: change wordRes to be a List of wordRe instead of a wrapper (issue #259)
- this permits direct storage of a list with additional matcher
  capabilities

- provide wordRes::matcher class for similar behaviour as previously
2018-02-21 10:05:30 +01:00
Mark Olesen
09a6e94073 BUG: incorrect HashTable / HashSet instances
- Eg instead of using labelHashSet, used HashSet<label> which uses
  the string::hash for hashing. Other places inadvertently using the
  string::hash instead of Hash<label> for hashing.

STYLE: use Map<..> instead of HashTable<.., label, Hash<label>>

- reduces clutter
2018-02-09 09:30:02 +01:00
Mark Olesen
e42c228155 ENH: cleanup List constructors (issue #725)
- add copy construct from UList

- remove copy construct from dissimilar types.

  This templated constructor was too generous in what it accepted.
  For the special cases where a copy constructor is required with
  a change in the data type, now use the createList factory method,
  which accepts a unary operator. Eg,

      auto scalars = scalarList::createList
      (
          labels,
          [](const label& val){ return 1.5*val; }
      );
2018-02-08 08:53:14 +01:00
Mark Olesen
1b9aec2a3d CONP: suppress register warnings for clang only 2018-01-30 06:49:32 +01:00
Mark Olesen
e13f8a38a9 COMP: suppress warning about deprecated register keyword (Flex) 2018-01-29 09:13:28 +01:00
Mark Olesen
345a2a42f1 ENH: simplify method names for reading argList options and arguments
- use succincter method names that more closely resemble dictionary
  and HashTable method names. This improves method name consistency
  between classes and also requires less typing effort:

    args.found(optName)        vs.  args.optionFound(optName)
    args.readIfPresent(..)     vs.  args.optionReadIfPresent(..)
    ...
    args.opt<scalar>(optName)  vs.  args.optionRead<scalar>(optName)
    args.read<scalar>(index)   vs.  args.argRead<scalar>(index)

- the older method names forms have been retained for code compatibility,
  but are now deprecated
2018-01-08 15:35:18 +01:00
Will Bainbridge
13d893e4c0 ENH: blockMesh: Always put the mesh in the constant directory 2017-12-19 09:58:51 +00:00
mattijs
52231e7836 ENH: snappyHexMesh: updated directional refinement 2017-12-13 12:27:25 +00:00
mattijs
88fac3ed9f ENH: snappyHexMesh: initial version of directional refinement 2017-12-11 17:23:33 +00:00
Henry Weller
5ea75f8a95 ENH: blockMesh: Added support for automatically reordering cyclic patches
Patch contributed by Mattijs Janssens
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1692
2017-12-01 11:01:30 +00:00
Will Bainbridge
3839f7478a ENH: foamyHexMesh: Generate coincident-full-match processor patches 2017-11-07 09:18:41 +00:00
Henry Weller
3e19185f10 ENH: mirrorMesh: Added support for cellLevel and pointLevel to support dynamic mesh refinement
Patch contributed by Mattijs Janssens
Resolves bug-report https://bugs.openfoam.org/view.php?id=2712
2017-10-27 14:58:26 +01:00
Mark Olesen
874452717a ENH: add mergeMeshes -resultTime option (as per subsetMesh) 2017-10-10 12:46:40 +02:00
Mark Olesen
1cfb59fe1a ENH: add read-option for polyTopoChanger (issue #608)
- avoid meshModifier contents from being read immediately upon
  construction, since this recreates an existing modifier instead of
  allowing us to specify our own.
2017-10-04 08:19:39 +02:00
Mark Olesen
7d7b0bfe84 STYLE: use list methods find/found instead of findIndex function 2017-10-24 19:07:34 +02:00
mattijs
4818b5808e ENH: snappyHexMesh: add different method for cellZone-faceZone consistency. Fixes #629. 2017-10-26 12:08:15 +01:00
mattijs
9a7c236add Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-10-25 16:29:33 +01:00
mattijs
49bcba2da7 ENH: snappyHexMesh: allow restart through suppression of refinement. Fixes #626. 2017-10-25 16:22:59 +01:00
Mark Olesen
b29f2a61b6 BUG: missing parallel-aware for metis-like decomposition 2017-10-13 12:45:28 +02:00
Andrew Heather
c60627686a Merge branch 'feature-kahip-decompose' into 'develop'
add support for KaHIP decomposition

See merge request Development/OpenFOAM-plus!154
2017-10-11 16:36:48 +01:00
Andrew Heather
528bd95ae8 Merge branch 'feature-list-methods' into 'develop'
Feature list methods

See merge request Development/OpenFOAM-plus!152
2017-10-11 16:34:22 +01:00
mattijs
27cd94e954 ENH: checkMesh: handle label overflow. Fixes #617. 2017-10-11 09:22:23 +01:00
Mark Olesen
e9254eee58 ENH: support KaHIP decomposition
- refactor some common metis-like elements into the metisLikeDecomp
  abstract class.
2017-10-09 21:00:34 +02:00
Mark Olesen
f76552f7f9 STYLE: rebase edge on labelPair, additional methods in Pair
- use FixedList first/last in Pair first/second

- consistent first/second access for line
2017-10-06 20:10:49 +02:00
Mark Olesen
24577907a1 ENH: add faceZone::resetAddressing with constant flipMap
- remove unused static variable, use updated hashtable methods
2017-10-04 08:55:00 +02:00
Mark Olesen
049617d037 ENH: update List and DynamicList methods (issue #595)
- improve functional compatibility with DynList (remove methods)
  * eg, remove an element from any position in a DynamicList
  * reduce the number of template parameters
  * remove/subset regions of DynamicList

- propagate Swap template specializations for lists, hashtables

- move construct/assignment to various containers.

- add find/found methods for FixedList and UList for a more succinct
  (and clearer?) usage than the equivalent global findIndex() function.

- simplify List_FOR_ALL loops
2017-09-20 17:20:54 +02:00
Sergio Ferraris
e8ec236cdf Merge branch 'feature-string-parsing' into 'develop'
improve consistency in parsing primitives from strings

See merge request !146
2017-09-25 18:28:47 +01:00
Mark Olesen
610854af03 STYLE: minor cleanup after merge 2017-09-22 16:25:17 +02:00
Mark Olesen
66104f2569 ENH: improve input stringency for argList options
Previously:

  - bad command-line input such as -label 1234xyz would parse as a
    label (with value 1234) and the trailing junk would be silently
    ignored. This may or may not be appropriate. If the trailing junk
    looked like this '100E' or '1000E-' (ie, forgot to type the
    exponent), the incorrectly parsed values can be quite bad:

        label  = 32684
        scalar = 6.93556e-310

Now:

  - use the updated readLabel/readScalar routines that trigger a
    FatalIOError on bad input:

        --> FOAM FATAL IO ERROR:
        Trailing content found parsing '1234xyz'

        --> FOAM FATAL IO ERROR:
        Trailing content found parsing '100E'

   This traps erroneous command-line input immediately.
2017-09-21 16:53:46 +02:00
Will Bainbridge
d9afa508e1 ENH: createBaffles: Create slave baffles on coupled patches 2017-11-29 15:30:35 +00:00
Will Bainbridge
363474de07 ENH: createBaffles: Corrected warning about internalFacesOnly setting 2017-11-22 14:45:23 +00:00
Henry Weller
83026d2546 ENH: mergePolyMesh: Added check for zero patches in the master mesh
Patch contributed by Jakub Benda
Resolves bug-report https://bugs.openfoam.org/view.php?id=2727
2017-10-18 16:24:08 +01:00
Henry Weller
141e219f87 BUG: blockMesh: Corrected diagram printed with "-help" to be consistent with the documentation
Resolves bug report https://bugs.openfoam.org/view.php?id=2710
2017-10-13 11:28:01 +01:00
Will Bainbridge
66b3934ab6 ENH: foamyHexMesh: Set no refinement iterations in global dictionary
ENH: foamyHexMesh: Made default region volume type that of it's parent

Foamy surface conformation entries have a "meshableSide" entry which
controls which side of the surface is to be meshed. Typically this is
set "inside" for boundaries and "both" for baffles. A sub-region's
default entry is now taken from it's parent, rather than a specific
value (it was "inside"). This is consistent with how other entries are
handled.

surfaceConformation
{
    locationInMesh      (0 0 0);

    geometryToConformTo
    {
        baffle
        {
            featureMethod           extractFeatures;
            includedAngle           120;
            meshableSide            both; // <-- per-surface setting

            regions
            {
                disk
                {
                    meshableSide    both; // <-- per-region setting*

                    // *in this example, this entry is not needed, as it
                    // is taken from the per-surface setting above
                }
            }
        }

        // ...
    }
}

ENH: foamyHexMesh: Added (reinstated) baffle patches

A patch can now be assigned to a baffle surface. This assignment will
take precedence over any face-zones.

surfaceConformation
{
    locationInMesh      (0 0 0);

    geometryToConformTo
    {
        disk
        {
            featureMethod           extractFeatures;
            includedAngle           120;
            meshableSide            both; // <-- baffle
            patchInfo
            {
                type wall;
                inGroups (walls);
            }
        }

        // ...
    }
}

STYLE: foamyHexMesh: Switched off output of all the secondary meshes
2017-09-15 15:04:16 +01:00
Henry Weller
436b43b61f ENH: mergePatchPairs: Updated 2017-09-19 09:30:26 +01:00
Henry Weller
96bdb82918 ENH: ideasUnvToFoam: Added test for no cells (e.g. 2D mesh)
Patch contributed by Bruno Santos
Resolves patch request https://bugs.openfoam.org/view.php?id=2691
2017-09-09 22:33:06 +01:00
mattijs
d27457d41d refineMesh: Correct parallel operation
Patch contributed by Mattijs Janssens
Resolves bug-report https://bugs.openfoam.org/view.php?id=2621
2017-07-22 22:39:40 +01:00
Andrew Heather
fb20bc107e INT: Updated dependent code following latest set of integrations 2017-09-06 16:05:12 +01:00
Andrew Heather
d8d6030ab6 INT: Integration of Mattijs' collocated parallel IO additions
Original commit message:
------------------------

Parallel IO: New collated file format

When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor.  Processor directories are named 'processorN',
where N is the processor number.

This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor.  The files are stored in a single
directory named 'processors'.

The new format produces significantly fewer files - one per field, instead of N
per field.  For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.

The file writing can be threaded allowing the simulation to continue running
while the data is being written to file.  NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".

The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:

OptimisationSwitches
{
    ...

    //- Parallel IO file handler
    //  uncollated (default), collated or masterUncollated
    fileHandler uncollated;

    //- collated: thread buffer size for queued file writes.
    //  If set to 0 or not sufficient for the file size threading is not used.
    //  Default: 2e9
    maxThreadFileBufferSize 2e9;

    //- masterUncollated: non-blocking buffer size.
    //  If the file exceeds this buffer size scheduled transfer is used.
    //  Default: 2e9
    maxMasterFileBufferSize 2e9;
}

When using the collated file handling, memory is allocated for the data in the
thread.  maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated.  If the data exceeds this size, the write does not use threading.

When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer.  If the
data exceeds this size, the system uses scheduled communication.

The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters.  Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.

A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
    mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated

An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling

The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
2017-07-07 11:39:56 +01:00
Will Bainbridge
994b303ad7 tetrahedron: triangle: Improved barycentric handling on tets and tris
Updated the tetrahedron and triangle classes to use the barycentric
primitives. Removed duplicate code for generating random positions in
tets and tris, and fixed bug in tri random position.
2017-06-06 12:01:02 +01:00
Will Bainbridge
62e3d37324 primitiveShapes: Generalised tetrahedron and triangle cutting. Cuts are
now possible with level-sets as well as planes. Removed tetPoints class
as this wasn't really used anywhere except for the old tet-cutting
routines. Restored tetPointRef.H to be consistent with other primitive
shapes. Re-wrote tet-overlap mapping in terms of the new cutting.
2017-05-22 11:40:37 +01:00
mattijs
e23999e5da Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-09-18 08:43:21 +01:00
mattijs
404aa759ca ENH: mirrorMesh: run parallel. Fixes #587.
Note that now mirrorMesh does not delete empty patches anymore.
2017-09-18 08:42:33 +01:00
mattijs
0430ad474f ENH: modifyMesh: added -dict argument 2017-09-07 15:02:39 +01:00
mattijs
aad962a0e4 COMP: checkMesh: missing header 2017-09-07 09:42:03 +01:00
mattijs
775f39960f Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-09-06 12:27:38 +01:00
mattijs
dbc0bbc903 ENH: extrudeMesh: preserve hexRef8Data. Fixes #471. 2017-09-06 12:24:32 +01:00
Prashant
b5f96306ea ENH: checkMesh: output information about zones 2017-08-31 17:41:50 +05:30
Prashant
82a18e4cd9 ENH: Print info on zones only if present 2017-08-28 10:21:47 +05:30
Prashant
81d4292855 ENH: Adds basic information for faceZone and cellZones during checkMesh
fixes #560
2017-08-18 17:04:51 +05:30
Mark Olesen
139edb2468 ENH: add input surface scaling (issue #514)
- surfaceFeatureExtract
  * dictionary "scale" entry

- triSurface
- triSurfaceLoader
  * optional scaleFactor on reading

- surfaceAdd
- surfaceBooleanFeatures
- surfaceClean
- surfaceCoarsen
  * scale option

- surfaceTransformPoints, transformPoints
  * scale option as scalar or vector quantity
2017-08-14 09:18:15 +02:00
mattijs
59b70b04d5 BUG: setSet: use of one-argument constructor. Fixes #566. 2017-08-10 18:41:22 +01:00
Mark Olesen
e70fc61660 ENH: consolidate, cleanup some string methods
- consolidate word::validated() into word::validate() and also allow
  as short form for string::validate<word>(). Also less confusing than
  having similarly named methods that essentially do the same thing.

- more consistent const access when iterating over strings

- add valid(char) for keyType and wordRe
2017-08-02 12:33:35 +02:00
Mark Olesen
a1742e7ad6 Merge branch 'style-string-access' into 'develop'
Consistent use of string methods

See merge request !128
2017-07-21 16:04:35 +01:00
Mark Olesen
b0b4c1aae5 COMP: intel compiler issues with operator ""_deg (fixes #544)
- this represents a partial revert for commit 6a0a8b99b3
2017-07-21 16:40:31 +02:00
Mark Olesen
2c69b7d7c4 STYLE: adjust some line lengths, doxygen comments 2017-07-20 13:50:35 +02:00
Andrew Heather
67e6f54808 Merge branch 'feature-streams-cleanup' into 'develop'
Feature streams cleanup

See merge request !127
2017-07-18 12:48:31 +01:00
Mark Olesen
263d7efae2 Merge branch 'stylefix-checkMesh' into 'develop'
STYLE: checkMesh: remove duplicate writeSets entry from header (resolves #293)

See merge request !125
2017-07-18 12:17:01 +01:00
Mark Olesen
86ef9e86dc ENH: make treatment of stream allocators more uniform (issue #532)
- use allocator class to wrap the stream pointers instead of passing
  them into ISstream, OSstream and using a dynamic cast to delete
  then. This is especially important if we will have a bidirectional
  stream (can't delete twice!).

STYLE:

- file stream constructors with std::string (C++11)

- for rewind, explicit about in|out direction. This is not currently
  important, but avoids surprises with any future bidirectional access.

- combined string streams in StringStream.H header.
  Similar to <sstream> include that has both input and output string
  streams.
2017-07-17 15:14:38 +02:00
Mark Olesen
8399277d7d STYLE: eliminate duplicate includes (issue #293) 2017-07-17 14:44:05 +02:00
Pete Bachant
dd0c26568a STYLE: checkMesh: remove duplicate writeSets entry from header (resolves #293) 2017-07-16 10:31:33 -04:00
mattijs
2183907afe Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-07-12 09:19:01 +01:00
mattijs
f932e25556 ENH: mergeOrSplitBaffles: fix header. See #468. 2017-07-12 09:17:48 +01:00
Mark Olesen
8df433860f STYLE: use string substr instead of string::operator()
- makes the purpose clearer.
  In some places, string::resize() is even simpler.

- use C++11 string::back() in preference to str[str.size()-1]
2017-07-21 12:30:42 +02:00
Mark Olesen
bc1f2fa97e STYLE: use auto and cfind to simplify selector usage (issue #512) 2017-07-03 10:36:03 +02:00
Mark Olesen
6a0a8b99b3 STYLE: use ""_deg user-literal for degrees to radians conversion
ENH: add degToRad() multiplier (useful for scalar fields)

- use degToRad() functions throughout instead of scattered local solutions
2017-07-04 15:36:46 +02:00
Mark Olesen
f55c568f13 ENH: upgrade from NamedEnum to Enum (issue #515) 2017-07-03 21:43:33 +02:00
Mark Olesen
1bcb454f6d STYLE: hash constructors with power-of-two
- use 1024 instead of 1000 since it will be changed internally to 1024 anyhow.
2017-07-05 10:46:50 +02:00
Mark Olesen
80d69c27b1 COMP: compilation with WM_SP
- STLpoint.H
- isoAdvection.C
- checkMesh/writeFields.C

STYLE: drop construct STLpoint(Istream&), since it doesn't make much sense

- No use case for reading via an OpenFOAM stream and tokenizer.
  Should always be parsing ASCII or reading binary directly.
2017-06-26 17:11:46 +02:00
Mark Olesen
02edc5b206 STYLE: tabs and line length in files, very dubious NULL in ensight reader.
- disable automatically upgrading copyrights in files since changes to
  not automatically imply a change in copyright. Eg, fixing a typo in
  comments, or changing a variable from 'loopI' to 'loopi' etc.
2017-06-26 13:43:05 +02:00
Mark Olesen
6ecddbe4a5 STYLE: use #includeEtc in tutorial cases
#includeEtc "caseDicts/setConstraintTypes"
 vs.
    #include "${WM_PROJECT_DIR}/etc/caseDicts/setConstraintTypes"
2017-06-21 16:42:57 +01:00
Mark Olesen
cde12ad9e5 ENH: consolidate vtk classes into 'Foam::vtk' namespace
- elminate the foamVtkFormatter operator() in favour of xmlAttr.
  Improves readability and the purpose is clearer.
2017-06-13 14:10:07 +02:00
Mark Olesen
c4f1349496 ENH: construct VTK writers with the outputOptions and adjust internally
- this shifts responsibility away from caller to the individual writers
  for knowing which file formats are supported and which file ending is
  appropriate. When the writer receives the output format request,
  it can elect to downgrade or otherwise adjust it to what it can
  actually manage (eg, legacy vs xml vs xml-append).

  But currently still just with legacy format backends.
2017-05-31 22:08:54 +02:00
Mark Olesen
418ebe4a87 ENH: replace writeFuncs in setSet with foamVtk library utilities 2017-05-19 12:28:13 +02:00
mattijs
fd665b4a3c ENH: overset: Initial release of overset capability.
Adds overset discretisation to selected physics:
- diffusion : overLaplacianDyMFoam
- incompressible steady : overSimpleFoam
- incompressible transient : overPimpleDyMFoam
- compressible transient: overRhoPimpleDyMFoam
- two-phase VOF: overInterDyMFoam

The overset method chosen is a parallel, fully implicit implementation
whereby the interpolation (from donor to acceptor) is inserted as an
adapted discretisation on the donor cells, such that the resulting matrix
can be solved using the standard linear solvers.

Above solvers come with a set of tutorials, showing how to create and set-up
simple simulations from scratch.
2017-06-14 09:51:02 +01:00
Mark Olesen
8da6e8eb74 DEFEATURE: remove CCM combine boundary code
- was generally somewhat fragile. The main problem stems from the fact
  that several interfaces may be attached to a boundary. No trivial
  means of solving this without too much work for a feature that is only
  "nice-to-have".
2017-05-31 12:34:07 +02:00
Mark Olesen
c6c79ab313 STYLE: use std::pair (not Tuple2) in conjunction with std::initializer_list
- no penalty compared to Tuple2, potential future benefits with C++
  constructor forwarding.
2017-05-29 11:07:39 +02:00
Mark Olesen
fb4971644f ENH: cleanup of NamedEnum
- Remove the unused enums() method since it delivers wholly unreliable
  results. It is not guaranteed to cover the full enumeration range,
  but only the listed names.

- Remove the unused strings() method.
  Duplicated functionality of the words(), but was never used.

- Change access of words() method from static to object.
  Better code isolation. Permits the constructor to take over
  as the single point of failure for bad input.

- Add values() method

- do not expose internal (HashTable) lookup since it makes it more
  difficult to enforce constness and the implementation detail should
  not be exposed. However leave toc() and sortedToc() for the interface.

STYLE: relocated NamedEnum under primitives (was containers)

- internal typedef as 'value_type' for some consistency with STL conventions
2017-05-29 10:30:55 +02:00
Andrew Heather
db5348880e MRG: resolved merge conflicts from merge from develop branch 2017-05-19 16:29:54 +01:00
Andrew Heather
6e72ceddd0 Merge branch 'enh-iter-cleanup' into 'develop'
Further hash table iter clean-up

See merge request !113
2017-05-19 12:44:05 +01:00
Andrew Heather
bb67ccd37d ENH: Cleaned up hash table item found checks 2017-05-19 11:15:35 +01:00
Mark Olesen
3814762785 ENH: relocate triSurface classes into surfMesh library (issue #294)
- simplifies organization, includes, linkage etc.
2017-05-18 10:42:05 +02:00
Andrew Heather
2e9bead519 MRG: merged develop line back into integration branch 2017-05-18 11:11:12 +01:00
Mark Olesen
d6e721a9bd ENH: simplify subsetMesh using new IOobjectList methods 2017-05-17 18:35:08 +02:00
Andrew Heather
91b90da4f3 Integrated Foundation code to commit 104aac5 2017-05-17 16:35:18 +01:00
mattijs
1889ea83e3 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-05-15 10:17:57 +01:00
Mark Olesen
8728e8353f STYLE: avoid explicit use of 'word' as HashTable template parameter
- less clutter and typing to use the default template parameter when
  the key is 'word' anyhow.

- use EdgeMap instead of the longhand HashTable version where
  appropriate
2017-05-10 13:44:27 +02:00
mattijs
91585fd32e STYLE: checkMesh: formatting help 2017-05-08 11:54:48 +01:00
mattijs
134f7abd57 ENH: checkMesh: output vol fields of mesh quality. Fixes #466. 2017-05-08 10:50:59 +01:00
Mark Olesen
45c29be341 COMP: avoid clang compiler warnings 2017-05-02 13:33:40 +02:00
Andrew Heather
a8e3482591 Merge branch 'edge-labelPair-containers' into 'develop'
Use updated edge and labelPair containers

See merge request !106
2017-05-02 16:35:54 +01:00
Andrew Heather
1a24be6e54 Merge branch 'feature-random-numbers' into 'develop'
Updated random numbers

See merge request !107
2017-04-28 10:11:18 +01:00
Andrew Heather
7f0cc0045d ENH: Random numbers - updated dependent code from change cachedRandom->Random class 2017-04-28 09:15:52 +01:00
Mark Olesen
633e4c9c7f ENH: Use edgeHashes.H and labelPairHashes.H
- avoids some duplicate code.
2017-04-27 10:15:56 +02:00
Andrew Heather
4ce77f6843 Merge branch 'master' into develop 2017-04-25 12:31:22 +01:00
Henry Weller
c085c5df25 Merged the edgeMesh library into the meshTools library 2017-04-21 10:38:53 +01:00
Mark Olesen
89f2eff565 STYLE: improve usage notes for transformPoints, surfaceTransformPoints 2017-04-20 16:27:44 +02:00
Henry Weller
5c51836501 The "<type>Coeffs" sub-dictionary is now optional for most model parameters
except turbulence and lagrangian which will also be updated shortly.

For example in the nonNewtonianIcoFoam offsetCylinder tutorial the viscosity
model coefficients may be specified in the corresponding "<type>Coeffs"
sub-dictionary:

transportModel  CrossPowerLaw;

CrossPowerLawCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  0.01;
    nuInf       [0 2 -1 0 0 0 0]  10;
    m           [0 0 1 0 0 0 0]   0.4;
    n           [0 0 0 0 0 0 0]   3;
}

BirdCarreauCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  1e-06;
    nuInf       [0 2 -1 0 0 0 0]  1e-06;
    k           [0 0 1 0 0 0 0]   0;
    n           [0 0 0 0 0 0 0]   1;
}

which allows a quick change between models, or using the simpler

transportModel  CrossPowerLaw;

nu0         [0 2 -1 0 0 0 0]  0.01;
nuInf       [0 2 -1 0 0 0 0]  10;
m           [0 0 1 0 0 0 0]   0.4;
n           [0 0 0 0 0 0 0]   3;

if quick switching between models is not required.

To support this more convenient parameter specification the inconsistent
specification of seedSampleSet in the streamLine and wallBoundedStreamLine
functionObjects had to be corrected from

    // Seeding method.
    seedSampleSet   uniform;  //cloud; //triSurfaceMeshPointSet;

    uniformCoeffs
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

to the simpler

    // Seeding method.
    seedSampleSet
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

which also support the "<type>Coeffs" form

    // Seeding method.
    seedSampleSet
    {
        type        uniform;

        uniformCoeffs
        {
            axis        x;  //distance;

            // Note: tracks slightly offset so as not to be on a face
            start       (-1.001 -0.05 0.0011);
            end         (-1.001 -0.05 1.0011);
            nPoints     20;
        }
    }
2017-04-20 09:14:48 +01:00
Andrew Heather
c072f911c9 BUG: Corrected compilation errors 2017-04-19 13:44:54 +01:00
mattijs
f95dbc2049 ENH: refineWallLayer: enable parallel operation. Fixes #454. 2017-04-13 16:30:46 +01:00
mattijs
dbc1e37a62 BUG: shm: layerSets gets removed. Fixes #453. 2017-04-13 11:26:35 +01:00
Mark Olesen
140c5110fe STYLE: remove tabs from files and shorten line-length. 2017-04-10 16:11:33 +02:00
Mark Olesen
5d15a13247 STYLE: use FOAM_UTILITIES in Make/options
- consistent with use of FOAM_SOLVERS, and reduces reliance on the FOAM_APP
  env variable
2017-04-07 08:17:43 +02:00
Mark Olesen
96fd3c9367 STYLE: consistent use of LIB_SRC in Make/options
- had occasional remnant use of FOAM_SRC
2017-04-06 23:56:23 +02:00
Mark Olesen
dd78e042fe ENH: reduce reliance on FOAM_EXT_LIBBIN during builds
- just check WM_PROJECT_DIR instead.

- provide a fallback value when FOAM_EXT_LIBBIN might actually be needed.

Only strictly need FOAM_EXT_LIBBIN for scotch/metis decomposition, and
when these are actually supplied by ThirdParty.
All other ThirdParty dependencies are referenced by BOOST_ARCH_PATH etc.

Can therefore drop the FOAM_EXT_LIBBIN dependency for VTK-related
things, which do not use scotch/metis anyhow.
2017-04-04 15:28:42 +02:00
Mark Olesen
7d048c71be Merge remote-tracking branch 'origin/master' into develop 2017-04-04 16:15:10 +02:00
Mark Olesen
638aded7cc BUG: bad shell construct for building optional component 2017-04-04 14:13:55 +02:00
Andrew Heather
45381b1085 MRG: Integrated Foundation code to commit 19e602b 2017-03-28 11:30:10 +01:00
Mark Olesen
07ce0a547a COMP: try harder to find/use zoltan library 2017-03-28 10:57:37 +02:00
Andrew Heather
436ec1cf1f MRG: Integrated Foundation code to commit ba4dbed 2017-03-23 12:11:49 +00:00
Andrew Heather
04c3d535b0 MRG: Integrated Foundation code to commit 47bd8e1 2017-03-23 10:12:38 +00:00
Henry Weller
96ad725a0b Updated UPstream::commsTypes to use the C++11 enum class 2017-03-10 19:54:55 +00:00
mattijs
a886410d16 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2017-03-13 12:02:22 +00:00
Mark Olesen
aa6b835104 ENH: use fileName::nameLessExt() instead of fileName::name(bool)
- the purpose is more explicit, without needing to check documentation
  about what the bool parameter means.

STYLE: improve formatting of fileName documentation
2017-03-10 11:49:56 +01:00
mattijs
2ce0aaddd4 ENH: splitMeshRegions: correct header. 2017-03-01 11:48:00 +00:00
Mark Olesen
a748ce1eaf STYLE: resolve COMP_FLAGS, COMPILE_FLAGS mismash in favour of COMP_FLAGS 2017-02-23 16:25:38 +01:00
Mark Olesen
07ec2b3abd STYLE: eliminate most use of _foamSource outside of the etc/ hierarchy 2017-02-23 10:58:55 +01:00
Mark Olesen
0ffae6461a ENH: creating a bounding box without points yields an inverted box
- The code create a box with a (0,0,0) point.
  The new definition is more logical and makes it very easy to grow
  the bounding box to include new points. It also simplifies much of
  the logic in the constructors.

- Use ROOTVGREAT instead of VGREAT for sizing greatBox and invertedBox.
  Avoids some overflow issues reported by Mattijs (thus GREAT has been
  used in treeBoundBox), but might still need further revision.
2017-02-01 12:15:00 +00:00
Henry Weller
5dd24f4968 Removed unhelpful clutter 2017-01-26 17:47:24 +00:00
Mark Olesen
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00
Mark Olesen
17d76e6261 ENH: boundBox 'reduce' method (related to #196)
reduce()
- parallel reduction of min/max values.
  Reduces coding for the callers.

  Eg,
      bb.reduce();

  instead of the previous method:
      reduce(bb.min(), minOp<point>());
      reduce(bb.max(), maxOp<point>());

STYLE:

- use initializer list for creating static content
- use point::min/point::max when defining standard boxes
2017-01-25 18:52:37 +01:00
Mark Olesen
1cb2966722 ENH: add blockMesh -sets option to write cellZones as cellSets (closes #348) 2017-01-25 13:16:49 +01:00
Henry Weller
4e5dc43418 snappyHexMesh: Added "noRefinement" writeFlag to control the writing of cellLevel, pointLevel etc. files
By default snappyHexMesh writes files relating to the hex-splitting process into
the polyMesh directory: cellLevel level0Edge pointLevel surfaceIndex

but by setting the noRefinement flag:

writeFlags
(
    noRefinement
    .
    .
    .
);

these optional files which are generally not needed are not written.

If you run the three stages of snappyHexMesh separately or run a dynamic mesh
solver supporting refinement and unrefinement these files are needed
and "noRefinement" should not be set.
2017-01-24 22:28:36 +00:00
Henry Weller
9b319dab61 blockMesh: Delete the polyMesh directory before meshing
unless the blockMeshDict is in the polyMesh directory or the "-noClean" option
is specified.

This avoids problems running snappyHexMesh without first clearing files from
polyMesh which interfere with the operation of snappyHexMesh.
2017-01-24 16:18:20 +00:00
Henry Weller
8632583934 Removed trailing blank lines
Resolves bug-report https://bugs.openfoam.org/view.php?id=2438
2017-01-19 20:17:47 +00:00
Henry Weller
e1730cf1f1 setsToZones: Add support for multi-region cases
Patch contributed by Bruno Santos
Resolves bug-report https://bugs.openfoam.org/view.php?id=2437
2017-01-19 08:17:54 +00:00
Henry Weller
126125c185 Rationalized the keyword to specify a file name in a dictionary to 'file'
e.g. in tutorials/heatTransfer/buoyantSimpleFoam/externalCoupledCavity/0/T

    hot
    {
        type            externalCoupledTemperature;
        commsDir        "${FOAM_CASE}/comms";
        file            "data";
        initByExternal  yes;
        log             true;
        value           uniform 307.75; // 34.6 degC
    }

Previously both 'file' and 'fileName' were used inconsistently in different
classes and given that there is no confusion or ambiguity introduced by using
the simpler 'file' rather than 'fileName' this change simplifies the use and
maintenance of OpenFOAM.
2017-01-07 09:38:54 +00:00
Henry Weller
f8e9a0dbf5 fluentMeshToFoam: Added '-2D' option consistent with plot3dToFoam
Patch contributed by Bruno Santos
Resolves patch request https://bugs.openfoam.org/view.php?id=2238
2017-01-05 15:59:42 +00:00
Henry Weller
c21d0d3642 Make/options: Added -lscotchDecomp where appropriate
Patch contributed by Bruno Santos
Resolves patch request https://bugs.openfoam.org/view.php?id=2410
2016-12-27 15:26:53 +00:00
Mark Olesen
d2fc56d6be STYLE: added note about limitation of the ccm conversion 2016-12-22 17:44:21 +01:00
Mark Olesen
608bb5d83b COMP: update lnInclude directories when building (issue #364)
- Could be related to interrupted builds.
  So if there are any parts of the build that rely on an explicit
  'wmakeLnInclude', make sure that the contents are properly updated.

--

ENH: improved feedback from top-level Allwmake

- Report which section (libraries, applications) is being built.

- Provide final summary of date, version, etc, which can be helpful
  for later diagnosis or record keeping.

- The -log=XXX option for Allwmake now accepts a directory name
  and automatically appends an appropriate log name.
  Eg,
      ./Allwmake -log=logs/  ->> logs/log.linux64GccDPInt32Opt

  The default name is built from the value of WM_OPTIONS.

--

BUG: shell not exiting properly in combination with -log option

- the use of 'tee' causes the shell to hang around.
  Added an explicit exit to catch this.

--

- Detecting the '-k' (-non-stop) option at the top-level Allwmake, which
  may improve robustness.

- Explicit continue-on-error for foamyMesh (as optional component)

- unify format of script messages for better readability

COMP: reduce warnings when building Pstream (old-style casts in openmpi)
2016-12-22 11:26:29 +01:00
Mark Olesen
0211b0a43b STYLE: correct the documented input names in header files (fixes #360) 2016-12-21 12:15:03 +01:00
mattijs
23a6cadfa6 BUG: redistributePar: remove inconsistent *ProcAddressing. Fixes #351. 2016-12-19 12:58:49 +00:00
Andrew Heather
91f8176a75 STYLE: using messaging macros when referring to function name 2016-12-16 16:56:55 +00:00
Mark Olesen
af74809786 ENH: increase precision of points for some mesh conversion applications 2016-12-15 21:35:14 +01:00
Mark Olesen
a32a915d2e BUG: polyMesh removeFiles side-effect for blockMesh viewer (issue #346)
- polyMesh constructor from cell shapes invoked 'removeFiles'.
  This may or may not be what the caller wants or expects.
  With the ParaView blockMesh viewer, this behaviour causes deletion of
  all mesh data (points, faces, etc) when the viewer is refreshed.

  Triggered even when just building the blockMesh topology.

- only a few places that construct a polyMesh from cell shapes
  (mostly mesh conversion utilities).
  Ensure that the file removal (if any) occurs in the application
  and *not* as a side-effect of calling the polyMesh constructor.

--

  blockMesh (application)
    - The placement of the removeFiles seems to also remove freshly
      generated sets (Bug or feature to remove sets?)

  +-----------------------+---------------+------------------+
  | Application           | Constructor   | removeFiles      |
  |                       | (patch info)  | new / existing   |
  +-----------------------+---------------+------------------+
  | blockMesh             | dictionary    | existing         |
  | ansysToFoam           | names         | new              |
  | cfx4ToFoam            | dictionary    | new              |
  | fluentMeshToFoam      | names         | new              |
  | gambitToFoam          | dictionary    | new              |
  | gmshToFoam            | names         | new              |
  | ideasUnvToFoam        | names         | new              |
  | kivaToFoam            | dictionary    | new              |
  | mshToFoam             | names         | new              |
  | netgenNeutralToFoam   | names         | new              |
  | plot3dToFoam          | names         | new              |
  | tetgenToFoam          | names         | new              |
  | vtkUnstructuredToFoam | names         | new              |
  +-----------------------+---------------+------------------+
2016-12-15 19:07:05 +01:00
mattijs
4f4b1d76c4 BUG: renumberMesh: Checking for cellProcAddressing after deleting it.
This is part of #340.
2016-12-14 17:21:56 +00:00
Andrew Heather
a3ef5cd137 Merge branch 'feature-chunkingComms' into 'develop'
Pstream: added maxCommsSize setting to do (unstructured) parallel transfers in blocks.

Tested:
- with maxCommsSize 0 produces exactly same result as plus.develop
- compiles with label64
- with maxCommsSize e.g. 3 produces exactly same result as plus.develop
- with maxCommsSize=0 exactly the same messages (with Pstream::debug = 1) as plus.develop

See merge request !85
2016-12-14 15:18:42 +00:00
mattijs
4ff163aed7 COMP: combinePatchFaces: missing include file 2016-12-14 11:45:32 +00:00
Mark Olesen
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
mattijs
4a77294c7c ENH: renumberMesh: remove old files 2016-12-05 15:24:52 +00:00
Mark Olesen
6f2b2aff40 STYLE: reduce script verbosity 2016-12-13 08:15:00 +01:00
Andrew Heather
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
Mark Olesen
026ed13c10 ENH: warn user when using constant/polyMesh/blockMeshDict (issue #309)
- the user might otherwise be unaware of the changed location
2016-11-29 12:14:48 +01:00
mattijs
3077a11c0d Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-28 09:33:23 +00:00
mattijs
da4dad4382 ENH: snappyHexMesh: improved comment 2016-11-28 09:32:58 +00:00
Henry Weller
81de1dc9ac topoSet: cellZoneSet, pointZoneSet extensions
cellZones and pointZones can now be created in one action without the
need to first create a cellSet or pointSet and converting that to the
corresponding zone, e.g.

actions
(
    // Example: create cellZone from a box region
    {
        name    c0;
        type    cellZoneSet;
        action  new;
        source  boxToCell;
        sourceInfo
        {
            box   (0.04 0 0)(0.06 100 100);
        }
    }
);
2016-11-25 16:01:41 +00:00
Mark Olesen
58fad3ab79 BUG: snappyHexMesh with -decomposeParDict option (issue #265)
- only occurs in combination with distributedTriSurfaceMesh in snappy.

- workaround similar to that previously used for surfaceRedistributePar
  (issue #60).

Minor adjustment of incompressible motorBike tutorial to detect use of
distributedTriSurfaceMesh.
2016-11-24 12:02:11 +01:00
Mark Olesen
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
2016-11-24 11:26:03 +01:00
mattijs
fa430cc407 Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-23 12:10:33 +00:00
mattijs
8c08ad6667 ENH: mergeOrSplitBaffles: allow operation on selected patches. Fixes #314. 2016-11-23 12:09:31 +00:00
Andrew Heather
1f826361c6 STYLE: Consistency updates to change input of <var>Name to <var>. Fixes #306 2016-11-22 14:50:33 +00:00
Mark Olesen
95e7faf309 STYLE: use the more succinct forms for argList (issue #307)
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
2016-11-20 13:06:57 +01:00
Mark Olesen
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
mattijs
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
Henry Weller
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
Henry Weller
5981836326 renumberMesh/Allwmake: Removed 'set -x' 2016-11-13 15:27:25 +00:00
mattijs
a20a17f54b Merge branch 'develop' of develop.openfoam.com:Development/OpenFOAM-plus into develop 2016-11-07 09:29:36 +00:00
mattijs
82fd902b3e ENH: snappyHexMeshDict: fix comment 2016-11-07 09:29:22 +00:00
Mark Olesen
e8f6099a1f COMP: Newer CGAL versions break current CGAL wmake rules (issue #288)
On 64-bit systems, the system installations of boost, cgal are under
lib64/. The behaviour for a ThirdParty build is mostly lib/ but this
can also be changing.

    Boost 1_62_0 and older build into 'lib/'.
    CGAL-4.9 builds into 'lib64/', older versions into 'lib/'.

Future-proof things by using lib$WM_COMPILER_LIB_ARCH for boost and
cgal build rules, and forcing these as build targets in the ThirdParty
makeCGAL as well.

--
STYLE: check for boost/version.hpp, CGAL/version.h instead their directories
2016-11-04 12:05:35 +01:00
mattijs
e8e0cfb416 ENH: mergeMeshes: in parallel make sure to put processor patches last. Fixes #239 2016-11-02 14:47:55 +00:00
mattijs
ac49daaf4d Merge remote-tracking branch 'origin/develop' into develop
Conflicts:
	applications/utilities/surface/surfaceCheck/surfaceCheck.C
2016-11-02 12:06:05 +00:00
mattijs
aa0b3934b0 ENH: snappyHexMeshDict: improved comment 2016-10-26 16:03:41 +01:00
Andrew Heather
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
Mark Olesen
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265).
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
2016-10-25 18:19:19 +02:00
Andrew Heather
4408d47075 MRG: Merged develop branch and resolved conflicts 2016-10-19 13:33:00 +01:00
Andrew Heather
509517e996 ENH: gmshToFoam: Updated for line entries 2016-10-19 13:20:02 +01:00
Mark Olesen
2c06a905ab Cleanup endian support (closes #271)
- Place common code under OSspecific.

By including "endian.H", either one of WM_BIG_ENDIAN or WM_LITTLE_ENDIAN
will be defined.

Provides inline 32-bit and 64-bit byte swap routines that can be
used/re-used elsewhere.

The inplace memory swaps currently used by the VTK output are left for
the moment pending further cleanup of that code.
2016-10-17 12:02:01 +02:00
Henry Weller
009203188f blockMesh: New experimental support for projecting block face point to geometric surfaces
For example, to mesh a sphere with a single block the geometry is defined in the
blockMeshDict as a searchableSurface:

    geometry
    {
        sphere
        {
            type searchableSphere;
            centre (0 0 0);
            radius 1;
        }
    }

The vertices, block topology and curved edges are defined in the usual
way, for example

    v 0.5773502;
    mv -0.5773502;

    a 0.7071067;
    ma -0.7071067;

    vertices
    (
        ($mv $mv $mv)
        ( $v $mv $mv)
        ( $v  $v $mv)
        ($mv  $v $mv)
        ($mv $mv  $v)
        ( $v $mv  $v)
        ( $v  $v  $v)
        ($mv  $v  $v)
    );

    blocks
    (
        hex (0 1 2 3 4 5 6 7) (10 10 10) simpleGrading (1 1 1)
    );

    edges
    (
        arc 0 1 (0 $ma $ma)
        arc 2 3 (0 $a $ma)
        arc 6 7 (0 $a $a)
        arc 4 5 (0 $ma $a)

        arc 0 3 ($ma 0 $ma)
        arc 1 2 ($a 0 $ma)
        arc 5 6 ($a 0 $a)
        arc 4 7 ($ma 0 $a)

        arc 0 4 ($ma $ma 0)
        arc 1 5 ($a $ma 0)
        arc 2 6 ($a $a 0)
        arc 3 7 ($ma $a 0)
    );

which will produce a mesh in which the block edges conform to the sphere
but the faces of the block lie somewhere between the original cube and
the spherical surface which is a consequence of the edge-based
transfinite interpolation.

Now the projection of the block faces to the geometry specified above
can also be specified:

    faces
    (
        project (0 4 7 3) sphere
        project (2 6 5 1) sphere
        project (1 5 4 0) sphere
        project (3 7 6 2) sphere
        project (0 3 2 1) sphere
        project (4 5 6 7) sphere
    );

which produces a mesh that actually conforms to the sphere.

See OpenFOAM-dev/tutorials/mesh/blockMesh/sphere

This functionality is experimental and will undergo further development
and generalization in the future to support more complex surfaces,
feature edge specification and extraction etc.  Please get involved if
you would like to see blockMesh become a more flexible block-structured
mesher.

Henry G. Weller, CFD Direct.
2016-10-13 15:05:24 +01:00
Henry Weller
eb5e2c923c snappyHexMesh: Added support for scotch redistribution
Requires scotch-6.?.?
2016-10-12 16:28:26 +01:00
Henry Weller
9c2892cd82 Removed #define __STDC_LIMIT_MACROS needed for C++ < 11
See http://bugs.openfoam.org/view.php?id=1474
2016-10-04 08:08:42 +01:00
Henry Weller
4bdf712b35 triangle storage: Return barycentric coordinates as FixedList instead of List
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2278
2016-09-30 16:22:55 +01:00
Henry Weller
025791559d blockMesh: Added printing of the block description to the '-help' output
blockMesh -help

Usage: blockMesh [OPTIONS]
options:
  -blockTopology    write block edges and centres as .obj files
  -case <dir>       specify alternate case directory, default is the cwd
  -dict <file>      specify alternative dictionary for the blockMesh description
  -noFunctionObjects
                    do not execute functionObjects
  -region <name>    specify alternative mesh region
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Block description

  For a given block, the correspondence between the ordering of
  vertex labels and face labels is shown below.
  For vertex numbering in the sequence 0 to 7 (block, centre):
    faces 0 (f0) and 1 are left and right, respectively;
    faces 2 and 3 are bottom and top;
    and faces 4 and 5 are front the back:

           4 ---- 5
      f3   |\     |\   f5
      |    | 7 ---- 6   \
      |    0 |--- 1 |    \
      |     \|     \|    f4
      f2     3 ---- 2

            f0 ----- f1

Using: OpenFOAM-dev (see www.OpenFOAM.org)
Build: dev-dc59c63351e7
2016-09-25 20:05:12 +01:00
mattijs
30442158b1 ENH: snappyHexMesh: added -region option (fixes #223) 2016-08-31 09:44:34 +01:00
mattijs
cefe2ea541 BUG: singleCellMesh: writes constant mesh to 0 directory instead.
Fixes partially #93.
2016-08-10 15:49:09 +01:00
Henry Weller
c5630e5cb1 Corrected nullptr collateral damage
Resolves bug-report http://bugs.openfoam.org/view.php?id=2181
2016-08-08 15:38:53 +01:00
Mark Olesen
95962d7780 ENH: provide conversion to/from ccm meshes (issue #204) 2016-08-08 12:50:26 +02:00
Mark Olesen
1d194d1629 CONFIG: allow static or dynamic linkage for optional conversion utility 2016-08-08 11:58:52 +02:00
Henry Weller
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
Mark Olesen
d8abc128f9 ENH: provide conversion to/from AVL/FIRE meshes (issue #204) 2016-08-05 13:22:22 +02:00
Mark Olesen
74f2d7f0a3 ENH: cleanup starcd (prostar) mesh conversion (issue #204)
- Reduce code duplication by moving out common functionality
  into STARCDCore.
2016-08-05 10:35:55 +02:00
Mark Olesen
1fc2a73213 ENH: use meshedSurf API for surface writers (issue #104)
- Allows passing of additional information (per-face zone ids) or possibly
  other things, while reducing the number of arguments to pass.

- In sampledTriSurfaceMesh, preserve the region information that was
  read in, passing it onwards via the UnsortedMeshSurface content.

  The Nastran surface writer is currently the only writer making use
  of this per-face zone information.
  Passing it through as a PSHELL attribute, which should retain the
  distinction for parts. (issue #204)
2016-08-10 15:41:24 +02:00